ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags10l03 |
|---|---|
| Clone Library Name | barley_pub |
>AROA_SHISO (Q9ZFF7) 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19)| (5-enolpyruvylshikimate-3-phosphate synthase) (EPSP synthase) (EPSPS) Length = 427 Score = 29.6 bits (65), Expect = 8.9 Identities = 22/61 (36%), Positives = 29/61 (47%) Frame = -2 Query: 598 MPVLAADLLSYALGNSDHIEALRVYLLSRSISRLKNEFQTGNGKITVKCIEGYPPIDLQL 419 M LAA L LG++D + + R I L + + G KIT E YPP+ LQ Sbjct: 99 MRPLAAAL---CLGSNDIVLTGEPRMKERPIGHLVDALRLGGAKITYLEQENYPPLRLQG 155 Query: 418 G 416 G Sbjct: 156 G 156
>AROA_SHIDY (O87006) 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19)| (5-enolpyruvylshikimate-3-phosphate synthase) (EPSP synthase) (EPSPS) Length = 427 Score = 29.6 bits (65), Expect = 8.9 Identities = 22/61 (36%), Positives = 29/61 (47%) Frame = -2 Query: 598 MPVLAADLLSYALGNSDHIEALRVYLLSRSISRLKNEFQTGNGKITVKCIEGYPPIDLQL 419 M LAA L LG++D + + R I L + + G KIT E YPP+ LQ Sbjct: 99 MRPLAAAL---CLGSNDIVLTGEPRMKERPIGHLVDALRLGRAKITYLEQENYPPLRLQG 155 Query: 418 G 416 G Sbjct: 156 G 156
>AROA_ECOLI (P0A6D3) 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19)| (5-enolpyruvylshikimate-3-phosphate synthase) (EPSP synthase) (EPSPS) Length = 427 Score = 29.6 bits (65), Expect = 8.9 Identities = 22/61 (36%), Positives = 29/61 (47%) Frame = -2 Query: 598 MPVLAADLLSYALGNSDHIEALRVYLLSRSISRLKNEFQTGNGKITVKCIEGYPPIDLQL 419 M LAA L LG++D + + R I L + + G KIT E YPP+ LQ Sbjct: 99 MRPLAAAL---CLGSNDIVLTGEPRMKERPIGHLVDALRLGGAKITYLEQENYPPLRLQG 155 Query: 418 G 416 G Sbjct: 156 G 156
>AROA_ECOL6 (Q8FJB6) 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19)| (5-enolpyruvylshikimate-3-phosphate synthase) (EPSP synthase) (EPSPS) Length = 427 Score = 29.6 bits (65), Expect = 8.9 Identities = 22/61 (36%), Positives = 29/61 (47%) Frame = -2 Query: 598 MPVLAADLLSYALGNSDHIEALRVYLLSRSISRLKNEFQTGNGKITVKCIEGYPPIDLQL 419 M LAA L LG++D + + R I L + + G KIT E YPP+ LQ Sbjct: 99 MRPLAAAL---CLGSNDIVLTGEPRMKERPIGHLVDALRQGGAKITYLEQENYPPLRLQG 155 Query: 418 G 416 G Sbjct: 156 G 156
>AROA_ECO57 (P0A6D4) 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19)| (5-enolpyruvylshikimate-3-phosphate synthase) (EPSP synthase) (EPSPS) Length = 427 Score = 29.6 bits (65), Expect = 8.9 Identities = 22/61 (36%), Positives = 29/61 (47%) Frame = -2 Query: 598 MPVLAADLLSYALGNSDHIEALRVYLLSRSISRLKNEFQTGNGKITVKCIEGYPPIDLQL 419 M LAA L LG++D + + R I L + + G KIT E YPP+ LQ Sbjct: 99 MRPLAAAL---CLGSNDIVLTGEPRMKERPIGHLVDALRLGGAKITYLEQENYPPLRLQG 155 Query: 418 G 416 G Sbjct: 156 G 156 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 99,601,418 Number of Sequences: 219361 Number of extensions: 2035866 Number of successful extensions: 4739 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 4601 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4739 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6712189044 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
