Clone Information

BLAST Search Result

Clone Name	rbags10l02
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|BT009220.1\| Triticum aestivum clone wle1n.pk0074.a9:fis, full...	981	0.0
2	ref\|NM_188480.1\| Oryza sativa (japonica cultivar-group), predic...	319	7e-84
3	dbj\|AK064992.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	317	3e-83
4	dbj\|AK063157.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	317	3e-83
5	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	196	7e-47
6	dbj\|AP002745.2\| Oryza sativa (japonica cultivar-group) genomic D...	196	7e-47
7	dbj\|AP002861.2\| Oryza sativa (japonica cultivar-group) genomic D...	196	7e-47
8	dbj\|AP008231.1\| Synechococcus elongatus PCC 6301 DNA, complete g...	44	0.61
9	gb\|AC104536.2\| Homo sapiens chromosome 19 clone LLNLR-308D7, com...	44	0.61
10	gb\|AC008746.10\| Homo sapiens chromosome 19 clone CTD-2587H19, co...	44	0.61
11	gb\|CP000100.1\| Synechococcus elongatus PCC 7942, complete genome	44	0.61
12	gb\|AC090333.5\| Homo sapiens chromosome 18, clone RP11-843P6, com...	42	2.4
13	gb\|AC009854.9\| Homo sapiens chromosome 18, clone RP11-333A13, co...	42	2.4
14	gb\|AC018731.5\| Homo sapiens BAC clone RP11-52K24 from 2, complet...	42	2.4
15	dbj\|AP004959.1\| Lotus japonicus genomic DNA, chromosome 3, clone...	42	2.4
16	gb\|AC116494.8\| Mus musculus chromosome 7, clone RP24-291G23, com...	40	9.5
17	gb\|AC115036.10\| Mus musculus chromosome 7, clone RP24-274F20, co...	40	9.5
18	gb\|AC134904.5\| Mus musculus BAC clone RP23-342C18 from chromosom...	40	9.5
19	gb\|DQ020490.1\| Tomato leaf curl New Delhi virus - Bitter Gourd s...	40	9.5
20	gb\|DQ169057.1\| Tomato leaf curl New Delhi virus segment DNA B, c...	40	9.5
21	emb\|AL136090.12\| Human DNA sequence from clone RP11-97N19 on chr...	40	9.5
22	emb\|AL136443.11\| Human DNA sequence from clone RP3-342H9 on chro...	40	9.5
23	emb\|AL121788.17\|HSDJ70A9 Human DNA sequence from clone RP1-70A9 ...	40	9.5
24	emb\|AL050309.4\|HSJ148M19 Human DNA sequence from clone RP1-148M1...	40	9.5
25	emb\|AL008987.1\|HS849L7 Human DNA sequence from clone RP5-849L7 o...	40	9.5
26	gb\|AC151965.2\| Mus musculus BAC clone RP24-173B17 from chromosom...	40	9.5
27	gb\|AC080153.4\| Homo sapiens chromosome , clone RP13-492I13, comp...	40	9.5
28	gb\|AC016205.7\| Homo sapiens, clone RP11-25C13, complete sequence	40	9.5
29	gb\|AY939924.1\| Tomato leaf curl New Delhi virus segment B, compl...	40	9.5
30	gb\|AC008525.7\|AC008525 Homo sapiens chromosome 5 clone CTC-467M3...	40	9.5
31	tpg\|BK001435.1\| TPA: TPA_exp: Homo sapiens SULT2A1P pseudogene, ...	40	9.5
32	gb\|U15017.2\|TLU15017 Tomato leaf curl New Delhi virus-Severe seg...	40	9.5
33	gb\|AC114546.14\| Homo sapiens chromosome 15, clone RP11-463I20, c...	40	9.5
34	emb\|AL954129.11\| Zebrafish DNA sequence from clone CH211-200P22 ...	40	9.5
35	emb\|AL671926.11\| Mouse DNA sequence from clone RP23-356J7 on chr...	40	9.5
36	emb\|AL132668.4\|CNS01DT9 Human chromosome 14 DNA sequence BAC R-5...	40	9.5
37	emb\|CT025666.5\| Zebrafish DNA sequence from clone DKEY-218J1 in ...	40	9.5
38	gb\|AC004696.1\|AC004696 Homo sapiens chromosome 19, cosmid R32281...	40	9.5
39	emb\|AL596104.24\| Mouse DNA sequence from clone RP23-326P8 on chr...	40	9.5
40	emb\|AL929342.7\| Zebrafish DNA sequence from clone DKEY-225K7, co...	40	9.5
41	gb\|AC122116.9\| Mus musculus chromosome 7, clone RP23-449M8, comp...	40	9.5

>gb|BT009220.1| Triticum aestivum clone wle1n.pk0074.a9:fis, full insert mRNA
           sequence
          Length = 788

 Score =  981 bits (495), Expect = 0.0
 Identities = 615/653 (94%), Gaps = 4/653 (0%)
 Strand = Plus / Minus

                                                                       
Query: 42  tgaagcataaacataaacaaagaggtgagattttcccaggtcctagaatgtatcctgcta 101
           ||||||||||||||||||||| |||||||||| | ||| ||||||||| |||||||||||
Sbjct: 689 tgaagcataaacataaacaaaaaggtgagattattccaagtcctagaacgtatcctgcta 630

                                                                       
Query: 102 tcaggttggttagtagcagtgccacaatcttgtcagtcgaactgtaagatcaacctcgcc 161
           |||||||||||||||||| ||||||||| ||||||||| | |||||||||||||||||||
Sbjct: 629 tcaggttggttagtagcactgccacaattttgtcagtccagctgtaagatcaacctcgcc 570

                                                                       
Query: 162 aacagtccagcttcagtttgtaagtagtaacaacgaacttatgcacatggaatccttggt 221
           |||||||||||| |||||||||||| |||||   |||||  || | |||| |||||||||
Sbjct: 569 aacagtccagctccagtttgtaagttgtaacgttgaactcgtggagatgggatccttggt 510

                                                                       
Query: 222 agggcatcaatatttaccatagtgggttaaatgtgggata-gaaaaatgagaaaggggcc 280
           |||||| |||||||||||||| |||||||||||||||||| ||| | |||| ||||||||
Sbjct: 509 agggcaacaatatttaccataatgggttaaatgtgggataagaatattgaggaaggggcc 450

                                                                       
Query: 281 taaactggttcgcatgctgaagttcttatgaagcgaatggggatgattcttcaattgatt 340
           ||||||||||||||||   ||||||||||||||| |||||||||||||||||||||||||
Sbjct: 449 taaactggttcgcatg---aagttcttatgaagcaaatggggatgattcttcaattgatt 393

                                                                       
Query: 341 tctggtctgtgggcttcaactcccaattacgaaggctgccagttgccgagttggactttg 400
           |||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 392 tctggtctgtgggctttaactcccaattacgaaggctgccagttgccgaatcggactttg 333

                                                                       
Query: 401 aaatgtacaaaaccttgttgtggaacctgtgaagtgttttccggtgaccgacacttatat 460
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 332 aaatgtacaaaaccttgttgtggaacctgtgaagtgtcttccggtgaccgacacttatat 273

                                                                       
Query: 461 atgtaatccctgcagcttcaatctgactgtatagatgaacctcatttgtatcatctagtg 520
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 atgtaatccctgcagcttcaatctgactgtatagatgaacctcatttgtatcatctagtg 213

                                                                       
Query: 521 cacttgtggactcgtccagtaggaccagagttggttttgcgagtaacaaacgagcaaatg 580
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 212 cacttgtggactcgtccagtaggaccagagttggttttgcgagtaacaaccgagcaaatg 153

                                                                       
Query: 581 caagacgctgttgctcccctagcgaaagaacactggcccaatcatggacagaatccatgc 640
           |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct: 152 caagacgctgttgctcccctagggaaagaacactagcccaatcatggacagaatccatgc 93

                                                                
Query: 641 cattgaaacgtggcagtatgtagcccagcctaacaacctcaagtactctgatc 693
           ||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 92  cattgaaacgtggtaatatgtagcccagcctaacaacctcaagtactctgatc 40

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>ref|NM_188480.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1545

 Score =  319 bits (161), Expect = 7e-84
 Identities = 263/297 (88%)
 Strand = Plus / Minus

                                                                        
Query: 397  tttgaaatgtacaaaaccttgttgtggaacctgtgaagtgttttccggtgaccgacactt 456
            |||||||||||||| ||||||||||||||| |||| ||||||||||||||||| |  |||
Sbjct: 1454 tttgaaatgtacaagaccttgttgtggaacttgtgcagtgttttccggtgaccaatgctt 1395

                                                                        
Query: 457  atatatgtaatccctgcagcttcaatctgactgtatagatgaacctcatttgtatcatct 516
            || || ||||||||||||||||||||||||||||||||||||  ||||||  ||||||||
Sbjct: 1394 atgtaagtaatccctgcagcttcaatctgactgtatagatgacgctcattcatatcatct 1335

                                                                        
Query: 517  agtgcacttgtggactcgtccagtaggaccagagttggttttgcgagtaacaaacgagca 576
            ||||||||||||||||| || || ||||| | |||||||||||| |||||||| ||||||
Sbjct: 1334 agtgcacttgtggactcatcaaggaggactaaagttggttttgcaagtaacaaccgagca 1275

                                                                        
Query: 577  aatgcaagacgctgttgctcccctagcgaaagaacactggcccaatcatggacagaatcc 636
            ||||||||||||||||||||||| || || ||||| |||||||||||||| | |||||||
Sbjct: 1274 aatgcaagacgctgttgctcccccagagagagaacgctggcccaatcatgcatagaatcc 1215

                                                                     
Query: 637  atgccattgaaacgtggcagtatgtagcccagcctaacaacctcaagtactctgatc 693
            |  ||||||||||| |||| ||| ||||| | | ||||| |||||||||||||||||
Sbjct: 1214 aaaccattgaaacgaggcaatatatagcctaacttaacagcctcaagtactctgatc 1158

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>dbj|AK064992.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001D15, full
            insert sequence
          Length = 2840

 Score =  317 bits (160), Expect = 3e-83
 Identities = 337/396 (85%)
 Strand = Plus / Minus

                                                                        
Query: 298  tgaagttcttatgaagcgaatggggatgattcttcaattgatttctggtctgtgggcttc 357
            |||| |||||||||||| |||| |||||| |||||||| ||  |||| ||||||||||| 
Sbjct: 2418 tgaaattcttatgaagcaaatgaggatgactcttcaatcgacatctgttctgtgggcttt 2359

                                                                        
Query: 358  aactcccaattacgaaggctgccagttgccgagttggactttgaaatgtacaaaaccttg 417
            |  | |||||||||  || ||| |   |  || | ||| |||||||||||||| ||||||
Sbjct: 2358 aggtaccaattacgtgggttgctatccgttgaatcggaatttgaaatgtacaagaccttg 2299

                                                                        
Query: 418  ttgtggaacctgtgaagtgttttccggtgaccgacacttatatatgtaatccctgcagct 477
            ||||||||| |||| ||||||||||||||||| |  ||||| || |||||||||||||||
Sbjct: 2298 ttgtggaacttgtgcagtgttttccggtgaccaatgcttatgtaagtaatccctgcagct 2239

                                                                        
Query: 478  tcaatctgactgtatagatgaacctcatttgtatcatctagtgcacttgtggactcgtcc 537
            |||||||||||||||||||||  ||||||  ||||||||||||||||||||||||| || 
Sbjct: 2238 tcaatctgactgtatagatgacgctcattcatatcatctagtgcacttgtggactcatca 2179

                                                                        
Query: 538  agtaggaccagagttggttttgcgagtaacaaacgagcaaatgcaagacgctgttgctcc 597
            || ||||| | |||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct: 2178 aggaggactaaagttggttttgcaagtaacaaccgagcaaatgcaagacgctgttgctcc 2119

                                                                        
Query: 598  cctagcgaaagaacactggcccaatcatggacagaatccatgccattgaaacgtggcagt 657
            || || || ||| | |||||||||||||| | ||||||||  ||||||||||| |||| |
Sbjct: 2118 cccagagagagagcgctggcccaatcatgcatagaatccaaaccattgaaacgaggcaat 2059

                                                
Query: 658  atgtagcccagcctaacaacctcaagtactctgatc 693
            || ||||| | | ||||| |||||||||||||||||
Sbjct: 2058 atatagcctaacttaacagcctcaagtactctgatc 2023

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>dbj|AK063157.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-043-C09, full
           insert sequence
          Length = 931

 Score =  317 bits (160), Expect = 3e-83
 Identities = 337/396 (85%)
 Strand = Plus / Minus

                                                                       
Query: 298 tgaagttcttatgaagcgaatggggatgattcttcaattgatttctggtctgtgggcttc 357
           |||| |||||||||||| |||| |||||| |||||||| ||  |||| ||||||||||| 
Sbjct: 509 tgaaattcttatgaagcaaatgaggatgactcttcaatcgacatctgttctgtgggcttt 450

                                                                       
Query: 358 aactcccaattacgaaggctgccagttgccgagttggactttgaaatgtacaaaaccttg 417
           |  | |||||||||  || ||| |   |  || | ||| |||||||||||||| ||||||
Sbjct: 449 aggtaccaattacgtgggttgctatccgttgaatcggaatttgaaatgtacaagaccttg 390

                                                                       
Query: 418 ttgtggaacctgtgaagtgttttccggtgaccgacacttatatatgtaatccctgcagct 477
           ||||||||| |||| ||||||||||||||||| |  ||||| || |||||||||||||| 
Sbjct: 389 ttgtggaacttgtgcagtgttttccggtgaccaatgcttatgtaagtaatccctgcagcc 330

                                                                       
Query: 478 tcaatctgactgtatagatgaacctcatttgtatcatctagtgcacttgtggactcgtcc 537
           |||||||||||||||||||||  ||||||  ||||||||||||||||||||||||| || 
Sbjct: 329 tcaatctgactgtatagatgacgctcattcatatcatctagtgcacttgtggactcatca 270

                                                                       
Query: 538 agtaggaccagagttggttttgcgagtaacaaacgagcaaatgcaagacgctgttgctcc 597
           || ||||| | |||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct: 269 aggaggactaaagttggttttgcaagtaacaaccgagcaaatgcaagacgctgttgctcc 210

                                                                       
Query: 598 cctagcgaaagaacactggcccaatcatggacagaatccatgccattgaaacgtggcagt 657
           || || || ||||| |||||||||||||| | ||||||||  ||||||||||| |||| |
Sbjct: 209 cccagagagagaacgctggcccaatcatgcatagaatccaaaccattgaaacgaggcaat 150

                                               
Query: 658 atgtagcccagcctaacaacctcaagtactctgatc 693
           || ||||| | | ||||| |||||||||||||||||
Sbjct: 149 atatagcctaacttaacagcctcaagtactctgatc 114

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score =  196 bits (99), Expect = 7e-47
 Identities = 171/195 (87%)
 Strand = Plus / Plus

                                                                           
Query: 499     acctcatttgtatcatctagtgcacttgtggactcgtccagtaggaccagagttggtttt 558
               ||||||||  ||||||||||||||||||||||||| || || ||||| | ||||||||||
Sbjct: 6500608 acctcattcatatcatctagtgcacttgtggactcatcaaggaggactaaagttggtttt 6500667

                                                                           
Query: 559     gcgagtaacaaacgagcaaatgcaagacgctgttgctcccctagcgaaagaacactggcc 618
               || |||||||| ||||||||||||||||||||||||||||| || || ||||| ||||||
Sbjct: 6500668 gcaagtaacaaccgagcaaatgcaagacgctgttgctcccccagagagagaacgctggcc 6500727

                                                                           
Query: 619     caatcatggacagaatccatgccattgaaacgtggcagtatgtagcccagcctaacaacc 678
               |||||||| | ||||||||  ||||||||||| |||| ||| ||||| | | ||||| ||
Sbjct: 6500728 caatcatgcatagaatccaaaccattgaaacgaggcaatatatagcctaacttaacagcc 6500787

                              
Query: 679     tcaagtactctgatc 693
               |||||||||||||||
Sbjct: 6500788 tcaagtactctgatc 6500802



 Score =  145 bits (73), Expect = 2e-31
 Identities = 169/201 (84%)
 Strand = Plus / Plus

                                                                           
Query: 298     tgaagttcttatgaagcgaatggggatgattcttcaattgatttctggtctgtgggcttc 357
               |||| |||||||||||| |||| |||||| |||||||| ||  |||| ||||||||||| 
Sbjct: 6500131 tgaaattcttatgaagcaaatgaggatgactcttcaatcgacatctgttctgtgggcttt 6500190

                                                                           
Query: 358     aactcccaattacgaaggctgccagttgccgagttggactttgaaatgtacaaaaccttg 417
               |  | |||||||||  || ||| |   |  || | ||| |||||||||||||| ||||||
Sbjct: 6500191 aggtaccaattacgtgggttgctatccgttgaatcggaatttgaaatgtacaagaccttg 6500250

                                                                           
Query: 418     ttgtggaacctgtgaagtgttttccggtgaccgacacttatatatgtaatccctgcagct 477
               ||||||||| |||| ||||||||||||||||| |  ||||| || |||||||||||||||
Sbjct: 6500251 ttgtggaacttgtgcagtgttttccggtgaccaatgcttatgtaagtaatccctgcagct 6500310

                                    
Query: 478     tcaatctgactgtatagatga 498
               |||||||||||||||||||||
Sbjct: 6500311 tcaatctgactgtatagatga 6500331

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>dbj|AP002745.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0489G09
          Length = 148707

 Score =  196 bits (99), Expect = 7e-47
 Identities = 171/195 (87%)
 Strand = Plus / Plus

                                                                         
Query: 499   acctcatttgtatcatctagtgcacttgtggactcgtccagtaggaccagagttggtttt 558
             ||||||||  ||||||||||||||||||||||||| || || ||||| | ||||||||||
Sbjct: 68088 acctcattcatatcatctagtgcacttgtggactcatcaaggaggactaaagttggtttt 68147

                                                                         
Query: 559   gcgagtaacaaacgagcaaatgcaagacgctgttgctcccctagcgaaagaacactggcc 618
             || |||||||| ||||||||||||||||||||||||||||| || || ||||| ||||||
Sbjct: 68148 gcaagtaacaaccgagcaaatgcaagacgctgttgctcccccagagagagaacgctggcc 68207

                                                                         
Query: 619   caatcatggacagaatccatgccattgaaacgtggcagtatgtagcccagcctaacaacc 678
             |||||||| | ||||||||  ||||||||||| |||| ||| ||||| | | ||||| ||
Sbjct: 68208 caatcatgcatagaatccaaaccattgaaacgaggcaatatatagcctaacttaacagcc 68267

                            
Query: 679   tcaagtactctgatc 693
             |||||||||||||||
Sbjct: 68268 tcaagtactctgatc 68282



 Score =  145 bits (73), Expect = 2e-31
 Identities = 169/201 (84%)
 Strand = Plus / Plus

                                                                         
Query: 298   tgaagttcttatgaagcgaatggggatgattcttcaattgatttctggtctgtgggcttc 357
             |||| |||||||||||| |||| |||||| |||||||| ||  |||| ||||||||||| 
Sbjct: 67611 tgaaattcttatgaagcaaatgaggatgactcttcaatcgacatctgttctgtgggcttt 67670

                                                                         
Query: 358   aactcccaattacgaaggctgccagttgccgagttggactttgaaatgtacaaaaccttg 417
             |  | |||||||||  || ||| |   |  || | ||| |||||||||||||| ||||||
Sbjct: 67671 aggtaccaattacgtgggttgctatccgttgaatcggaatttgaaatgtacaagaccttg 67730

                                                                         
Query: 418   ttgtggaacctgtgaagtgttttccggtgaccgacacttatatatgtaatccctgcagct 477
             ||||||||| |||| ||||||||||||||||| |  ||||| || |||||||||||||||
Sbjct: 67731 ttgtggaacttgtgcagtgttttccggtgaccaatgcttatgtaagtaatccctgcagct 67790

                                  
Query: 478   tcaatctgactgtatagatga 498
             |||||||||||||||||||||
Sbjct: 67791 tcaatctgactgtatagatga 67811

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>dbj|AP002861.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0665D10
          Length = 134967

 Score =  196 bits (99), Expect = 7e-47
 Identities = 171/195 (87%)
 Strand = Plus / Plus

                                                                          
Query: 499    acctcatttgtatcatctagtgcacttgtggactcgtccagtaggaccagagttggtttt 558
              ||||||||  ||||||||||||||||||||||||| || || ||||| | ||||||||||
Sbjct: 123003 acctcattcatatcatctagtgcacttgtggactcatcaaggaggactaaagttggtttt 123062

                                                                          
Query: 559    gcgagtaacaaacgagcaaatgcaagacgctgttgctcccctagcgaaagaacactggcc 618
              || |||||||| ||||||||||||||||||||||||||||| || || ||||| ||||||
Sbjct: 123063 gcaagtaacaaccgagcaaatgcaagacgctgttgctcccccagagagagaacgctggcc 123122

                                                                          
Query: 619    caatcatggacagaatccatgccattgaaacgtggcagtatgtagcccagcctaacaacc 678
              |||||||| | ||||||||  ||||||||||| |||| ||| ||||| | | ||||| ||
Sbjct: 123123 caatcatgcatagaatccaaaccattgaaacgaggcaatatatagcctaacttaacagcc 123182

                             
Query: 679    tcaagtactctgatc 693
              |||||||||||||||
Sbjct: 123183 tcaagtactctgatc 123197



 Score =  145 bits (73), Expect = 2e-31
 Identities = 169/201 (84%)
 Strand = Plus / Plus

                                                                          
Query: 298    tgaagttcttatgaagcgaatggggatgattcttcaattgatttctggtctgtgggcttc 357
              |||| |||||||||||| |||| |||||| |||||||| ||  |||| ||||||||||| 
Sbjct: 122526 tgaaattcttatgaagcaaatgaggatgactcttcaatcgacatctgttctgtgggcttt 122585

                                                                          
Query: 358    aactcccaattacgaaggctgccagttgccgagttggactttgaaatgtacaaaaccttg 417
              |  | |||||||||  || ||| |   |  || | ||| |||||||||||||| ||||||
Sbjct: 122586 aggtaccaattacgtgggttgctatccgttgaatcggaatttgaaatgtacaagaccttg 122645

                                                                          
Query: 418    ttgtggaacctgtgaagtgttttccggtgaccgacacttatatatgtaatccctgcagct 477
              ||||||||| |||| ||||||||||||||||| |  ||||| || |||||||||||||||
Sbjct: 122646 ttgtggaacttgtgcagtgttttccggtgaccaatgcttatgtaagtaatccctgcagct 122705

                                   
Query: 478    tcaatctgactgtatagatga 498
              |||||||||||||||||||||
Sbjct: 122706 tcaatctgactgtatagatga 122726

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>dbj|AP008231.1| Synechococcus elongatus PCC 6301 DNA, complete genome
          Length = 2696255

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 439     ttccggtgaccgacacttatat 460
               ||||||||||||||||||||||
Sbjct: 1075526 ttccggtgaccgacacttatat 1075547

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>gb|AC104536.2| Homo sapiens chromosome 19 clone LLNLR-308D7, complete sequence
          Length = 38667

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 322  gatgattcttcaattgatttct 343
            ||||||||||||||||||||||
Sbjct: 4600 gatgattcttcaattgatttct 4621

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>gb|AC008746.10| Homo sapiens chromosome 19 clone CTD-2587H19, complete sequence
          Length = 200070

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 322    gatgattcttcaattgatttct 343
              ||||||||||||||||||||||
Sbjct: 181097 gatgattcttcaattgatttct 181118

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>gb|CP000100.1| Synechococcus elongatus PCC 7942, complete genome
          Length = 2695903

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 439    ttccggtgaccgacacttatat 460
              ||||||||||||||||||||||
Sbjct: 545353 ttccggtgaccgacacttatat 545332

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>gb|AC090333.5| Homo sapiens chromosome 18, clone RP11-843P6, complete sequence
          Length = 165344

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 255   tgggatagaaaaatgagaaaggggc 279
             ||||| |||||||||||||||||||
Sbjct: 93441 tgggagagaaaaatgagaaaggggc 93465

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>gb|AC009854.9| Homo sapiens chromosome 18, clone RP11-333A13, complete sequence
          Length = 207293

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 255   tgggatagaaaaatgagaaaggggc 279
             ||||| |||||||||||||||||||
Sbjct: 25127 tgggagagaaaaatgagaaaggggc 25103

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>gb|AC018731.5| Homo sapiens BAC clone RP11-52K24 from 2, complete sequence
          Length = 140174

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 259   atagaaaaatgagaaaggggc 279
             |||||||||||||||||||||
Sbjct: 79491 atagaaaaatgagaaaggggc 79511

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>dbj|AP004959.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT21I12, TM0136,
             complete sequence
          Length = 81332

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 276   gggcctaaactggttcgcatg 296
             |||||||||||||||||||||
Sbjct: 77507 gggcctaaactggttcgcatg 77527

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>gb|AC116494.8| Mus musculus chromosome 7, clone RP24-291G23, complete sequence
          Length = 201187

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 255    tgggatagaaaaatgagaaa 274
              ||||||||||||||||||||
Sbjct: 103509 tgggatagaaaaatgagaaa 103490

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>gb|AC115036.10| Mus musculus chromosome 7, clone RP24-274F20, complete sequence
          Length = 173506

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 259    atagaaaaatgagaaagggg 278
              ||||||||||||||||||||
Sbjct: 120586 atagaaaaatgagaaagggg 120567

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>gb|AC134904.5| Mus musculus BAC clone RP23-342C18 from chromosome 5, complete sequence
          Length = 198357

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 43     gaagcataaacataaacaaa 62
              ||||||||||||||||||||
Sbjct: 148926 gaagcataaacataaacaaa 148945

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>gb|DQ020490.1| Tomato leaf curl New Delhi virus - Bitter Gourd segment DNA B,
            complete sequence
          Length = 2706

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 334  attgatttctggtctgtggg 353
            ||||||||||||||||||||
Sbjct: 1653 attgatttctggtctgtggg 1634

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>gb|DQ169057.1| Tomato leaf curl New Delhi virus segment DNA B, complete sequence
          Length = 2693

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 334  attgatttctggtctgtggg 353
            ||||||||||||||||||||
Sbjct: 1638 attgatttctggtctgtggg 1619

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>emb|AL136090.12| Human DNA sequence from clone RP11-97N19 on chromosome 20 Contains the
             5' end of the SLC24A3 gene for solute carrier family 24
             (sodium/potassium/calcium exchanger) member 3, a novel
             gene and a CpG island, complete sequence
          Length = 185473

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 253   tgtgggatagaaaaatgagaaagg 276
             |||||||||||||||||| |||||
Sbjct: 38092 tgtgggatagaaaaatgataaagg 38069

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>emb|AL136443.11| Human DNA sequence from clone RP3-342H9 on chromosome 6 Contains a CpG
             island, complete sequence
          Length = 74354

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 272   aaaggggcctaaactggttc 291
             ||||||||||||||||||||
Sbjct: 26238 aaaggggcctaaactggttc 26219

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>emb|AL121788.17|HSDJ70A9 Human DNA sequence from clone RP1-70A9 on chromosome 6q16.3-22.1
             Contains the gene for a novel protein (FLJ30976), complete
             sequence
          Length = 135079

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 167   tccagcttcagtttgtaagt 186
             ||||||||||||||||||||
Sbjct: 77859 tccagcttcagtttgtaagt 77878

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>emb|AL050309.4|HSJ148M19 Human DNA sequence from clone RP1-148M19 on chromosome Xp11.22-11.3
              Contains the 5' end of the KLF8 gene for Kruppel-like
              factor 8 and a ribosomal protein L23a (RPL23A) pseudogene,
              complete sequence
          Length = 177483

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 227    atcaatatttaccatagtgg 246
              ||||||||||||||||||||
Sbjct: 121734 atcaatatttaccatagtgg 121715

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>emb|AL008987.1|HS849L7 Human DNA sequence from clone RP5-849L7 on chromosome Xq21 Contains a
            dendritic cell protein (GA17) pseudogene, complete
            sequence
          Length = 128169

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 258  gatagaaaaatgagaaaggg 277
            ||||||||||||||||||||
Sbjct: 7541 gatagaaaaatgagaaaggg 7522

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>gb|AC151965.2| Mus musculus BAC clone RP24-173B17 from chromosome 5, complete sequence
          Length = 221687

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 43     gaagcataaacataaacaaa 62
              ||||||||||||||||||||
Sbjct: 142215 gaagcataaacataaacaaa 142196

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>gb|AC080153.4| Homo sapiens chromosome , clone RP13-492I13, complete sequence
          Length = 55176

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 388   gagttggactttgaaatgta 407
             ||||||||||||||||||||
Sbjct: 17019 gagttggactttgaaatgta 17000

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>gb|AC016205.7| Homo sapiens, clone RP11-25C13, complete sequence
          Length = 167292

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 249   taaatgtgggatagaaaaatgagaaagg 276
             ||||||||  ||||||||||||||||||
Sbjct: 33679 taaatgtgcaatagaaaaatgagaaagg 33706

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>gb|AY939924.1| Tomato leaf curl New Delhi virus segment B, complete sequence
          Length = 2643

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 334  attgatttctggtctgtggg 353
            ||||||||||||||||||||
Sbjct: 1638 attgatttctggtctgtggg 1619

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>gb|AC008525.7|AC008525 Homo sapiens chromosome 5 clone CTC-467M3, complete sequence
          Length = 123238

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 45    agcataaacataaacaaaga 64
             ||||||||||||||||||||
Sbjct: 74568 agcataaacataaacaaaga 74549

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>tpg|BK001435.1| TPA: TPA_exp: Homo sapiens SULT2A1P pseudogene, complete sequence;
              alternatively spliced
          Length = 190728

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 402    aatgtacaaaaccttgttgtggaa 425
              |||||||||||||||| |||||||
Sbjct: 152028 aatgtacaaaaccttgatgtggaa 152005

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>gb|U15017.2|TLU15017 Tomato leaf curl New Delhi virus-Severe segment B, complete sequence
          Length = 2696

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 334  attgatttctggtctgtggg 353
            ||||||||||||||||||||
Sbjct: 1641 attgatttctggtctgtggg 1622

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>gb|AC114546.14| Homo sapiens chromosome 15, clone RP11-463I20, complete sequence
          Length = 86106

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 388   gagttggactttgaaatgta 407
             ||||||||||||||||||||
Sbjct: 16816 gagttggactttgaaatgta 16797

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>emb|AL954129.11| Zebrafish DNA sequence from clone CH211-200P22 in linkage group 24,
             complete sequence
          Length = 161275

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 263   aaaaatgagaaaggggccta 282
             ||||||||||||||||||||
Sbjct: 46068 aaaaatgagaaaggggccta 46087

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>emb|AL671926.11| Mouse DNA sequence from clone RP23-356J7 on chromosome X, complete
            sequence
          Length = 153310

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 488  tgtatagatgaacctcattt 507
            ||||||||||||||||||||
Sbjct: 7904 tgtatagatgaacctcattt 7923

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>emb|AL132668.4|CNS01DT9 Human chromosome 14 DNA sequence BAC R-550M19 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 175725

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 36     taaacctgaagcataaacat 55
              ||||||||||||||||||||
Sbjct: 119987 taaacctgaagcataaacat 120006

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>emb|CT025666.5| Zebrafish DNA sequence from clone DKEY-218J1 in linkage group 5,
             complete sequence
          Length = 131912

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 566   acaaacgagcaaatgcaaga 585
             ||||||||||||||||||||
Sbjct: 31720 acaaacgagcaaatgcaaga 31739

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>gb|AC004696.1|AC004696 Homo sapiens chromosome 19, cosmid R32281, complete sequence
          Length = 46680

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 402  aatgtacaaaaccttgttgtggaa 425
            |||||||||||||||| |||||||
Sbjct: 5219 aatgtacaaaaccttgatgtggaa 5196

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>emb|AL596104.24| Mouse DNA sequence from clone RP23-326P8 on chromosome 11, complete
             sequence
          Length = 164530

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 397   tttgaaatgtacaaaacctt 416
             ||||||||||||||||||||
Sbjct: 85207 tttgaaatgtacaaaacctt 85188

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>emb|AL929342.7| Zebrafish DNA sequence from clone DKEY-225K7, complete sequence
          Length = 117082

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 566   acaaacgagcaaatgcaaga 585
             ||||||||||||||||||||
Sbjct: 58057 acaaacgagcaaatgcaaga 58038

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>gb|AC122116.9| Mus musculus chromosome 7, clone RP23-449M8, complete sequence
          Length = 173990

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 257   ggatagaaaaatgagaaagg 276
             ||||||||||||||||||||
Sbjct: 47143 ggatagaaaaatgagaaagg 47162


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,697,465
Number of Sequences: 3902068
Number of extensions: 5697465
Number of successful extensions: 102997
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 102869
Number of HSP's gapped (non-prelim): 125
length of query: 693
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 670
effective length of database: 17,143,297,704
effective search space: 11486009461680
effective search space used: 11486009461680
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result