| Clone Name | rbags10k17 |
|---|---|
| Clone Library Name | barley_pub |
>RL9_ORYSA (P49210) 60S ribosomal protein L9| Length = 190 Score = 239 bits (609), Expect = 3e-63 Identities = 120/130 (92%), Positives = 125/130 (96%) Frame = -1 Query: 427 FGTRRTMAAIRTAISHVQNLITGVTKGFRYKMRFVYAHFPINASITAANRGIEIRNFLGE 248 FGTRRTMAAIRTAISHVQNLITGVTKG+RYKMRFVYAHFPINASIT +N IEIRNFLGE Sbjct: 60 FGTRRTMAAIRTAISHVQNLITGVTKGYRYKMRFVYAHFPINASITNSNTAIEIRNFLGE 119 Query: 247 KKVRKVDMLDGVTILRSEKVKDEIVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIY 68 KKVRKVDML+GVTILRSEKVKDE+VLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIY Sbjct: 120 KKVRKVDMLEGVTILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIY 179 Query: 67 VSDKGAIKEE 38 VSDKG I E+ Sbjct: 180 VSDKGTITED 189
>RL9_PEA (P30707) 60S ribosomal protein L9 (Gibberellin-regulated protein| GA) Length = 193 Score = 222 bits (565), Expect = 3e-58 Identities = 110/130 (84%), Positives = 121/130 (93%) Frame = -1 Query: 427 FGTRRTMAAIRTAISHVQNLITGVTKGFRYKMRFVYAHFPINASITAANRGIEIRNFLGE 248 FG+R+T AAIRTA+SHV+NLITGVTKGFRYKMRFVYA FPINASIT N+ IEIRNFLGE Sbjct: 63 FGSRKTSAAIRTALSHVENLITGVTKGFRYKMRFVYADFPINASITNDNKSIEIRNFLGE 122 Query: 247 KKVRKVDMLDGVTILRSEKVKDEIVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIY 68 KKVRKVD+LDGV+I+RSEKVKDE+VLDGNDIELVSRS ALINQKCHVK KDIRKFLDGIY Sbjct: 123 KKVRKVDLLDGVSIIRSEKVKDEVVLDGNDIELVSRSCALINQKCHVKKKDIRKFLDGIY 182 Query: 67 VSDKGAIKEE 38 VS+KGA+ E Sbjct: 183 VSEKGAVVVE 192
>RL9_ARATH (P49209) 60S ribosomal protein L9| Length = 194 Score = 218 bits (555), Expect = 5e-57 Identities = 109/130 (83%), Positives = 118/130 (90%) Frame = -1 Query: 427 FGTRRTMAAIRTAISHVQNLITGVTKGFRYKMRFVYAHFPINASITAANRGIEIRNFLGE 248 FGTR+T A+IRTA+SHV NLI+GVT+GFRYKMRFVYAHFPINASI + IEIRNFLGE Sbjct: 64 FGTRKTSASIRTALSHVDNLISGVTRGFRYKMRFVYAHFPINASIGGDGKSIEIRNFLGE 123 Query: 247 KKVRKVDMLDGVTILRSEKVKDEIVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIY 68 KKVRKV+MLDGVTI+RSEKVKDEIVLDGNDIELVSRS ALINQKCHVK KDIRKFLDGIY Sbjct: 124 KKVRKVEMLDGVTIVRSEKVKDEIVLDGNDIELVSRSCALINQKCHVKKKDIRKFLDGIY 183 Query: 67 VSDKGAIKEE 38 VS+K I EE Sbjct: 184 VSEKSKIVEE 193
>RL9_SPOFR (Q963B7) 60S ribosomal protein L9| Length = 190 Score = 164 bits (415), Expect = 8e-41 Identities = 79/128 (61%), Positives = 100/128 (78%) Frame = -1 Query: 427 FGTRRTMAAIRTAISHVQNLITGVTKGFRYKMRFVYAHFPINASITAANRGIEIRNFLGE 248 FG+++ +AA+RT SHV+N+I GVTKGF+YKMR VYAHFPIN T N IEIRNFLGE Sbjct: 59 FGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRSVYAHFPINCVTTEGNSVIEIRNFLGE 118 Query: 247 KKVRKVDMLDGVTILRSEKVKDEIVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIY 68 K +R+V M GVT++ S K KDE++++GN +E VS SAALI Q VKNKDIRKFLDG+Y Sbjct: 119 KYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLY 178 Query: 67 VSDKGAIK 44 VS+K ++ Sbjct: 179 VSEKTTVE 186
>RL9_ICTPU (Q90YW0) 60S ribosomal protein L9| Length = 192 Score = 161 bits (408), Expect = 5e-40 Identities = 83/129 (64%), Positives = 95/129 (73%) Frame = -1 Query: 427 FGTRRTMAAIRTAISHVQNLITGVTKGFRYKMRFVYAHFPINASITAANRGIEIRNFLGE 248 +G R+ +A +RT SHVQN+I GVT GFRYKMR VYAHFPIN I +EIRNFLGE Sbjct: 61 WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQETGSLVEIRNFLGE 120 Query: 247 KKVRKVDMLDGVTILRSEKVKDEIVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIY 68 K +R+V M GV S KDE+VL+GNDIELVS SAALI Q VKNKDIRKFLDGIY Sbjct: 121 KYIRRVRMRPGVNCALSAAQKDELVLEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY 180 Query: 67 VSDKGAIKE 41 VS+KG + E Sbjct: 181 VSEKGTVVE 189
>RL9_DROME (P50882) 60S ribosomal protein L9| Length = 190 Score = 161 bits (408), Expect = 5e-40 Identities = 78/127 (61%), Positives = 99/127 (77%) Frame = -1 Query: 427 FGTRRTMAAIRTAISHVQNLITGVTKGFRYKMRFVYAHFPINASITAANRGIEIRNFLGE 248 FGT++ +AA+RT SH++N+I GVT GF+YKMR VYAHFPIN + N IEIRNFLGE Sbjct: 59 FGTKKELAAVRTVCSHIENMIKGVTFGFQYKMRAVYAHFPINCVTSENNTVIEIRNFLGE 118 Query: 247 KKVRKVDMLDGVTILRSEKVKDEIVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIY 68 K +R+V+M GVT++ S KDE++++GNDIE VS SAALI Q VKNKDIRKFLDG+Y Sbjct: 119 KYIRRVEMAPGVTVVNSTAQKDELIVEGNDIESVSGSAALIQQSTTVKNKDIRKFLDGLY 178 Query: 67 VSDKGAI 47 VS+K + Sbjct: 179 VSEKTTV 185
>RL9_MACFA (Q5IFJ7) 60S ribosomal protein L9| Length = 192 Score = 161 bits (407), Expect = 7e-40 Identities = 82/129 (63%), Positives = 97/129 (75%) Frame = -1 Query: 427 FGTRRTMAAIRTAISHVQNLITGVTKGFRYKMRFVYAHFPINASITAANRGIEIRNFLGE 248 +G R+ +A IRT SHVQN+I GVT GFRYKMR VYAHFPIN I +EIRNFLGE Sbjct: 61 WGNRKELATIRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE 120 Query: 247 KKVRKVDMLDGVTILRSEKVKDEIVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIY 68 K +R+V M GV S+ KDE++L+GNDIELVS SAALI Q VKNKDIRKFLDGIY Sbjct: 121 KYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY 180 Query: 67 VSDKGAIKE 41 VS+KG +++ Sbjct: 181 VSEKGTVQQ 189
>RL9_RAT (P17077) 60S ribosomal protein L9| Length = 192 Score = 160 bits (406), Expect = 9e-40 Identities = 81/129 (62%), Positives = 97/129 (75%) Frame = -1 Query: 427 FGTRRTMAAIRTAISHVQNLITGVTKGFRYKMRFVYAHFPINASITAANRGIEIRNFLGE 248 +G R+ +A +RT SHVQN+I GVT GFRYKMR VYAHFPIN I +EIRNFLGE Sbjct: 61 WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE 120 Query: 247 KKVRKVDMLDGVTILRSEKVKDEIVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIY 68 K +R+V M GV S+ KDE++L+GNDIELVS SAALI Q VKNKDIRKFLDGIY Sbjct: 121 KYIRRVRMRTGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY 180 Query: 67 VSDKGAIKE 41 VS+KG +++ Sbjct: 181 VSEKGTVQQ 189
>RL9_MOUSE (P51410) 60S ribosomal protein L9| Length = 192 Score = 160 bits (406), Expect = 9e-40 Identities = 81/129 (62%), Positives = 97/129 (75%) Frame = -1 Query: 427 FGTRRTMAAIRTAISHVQNLITGVTKGFRYKMRFVYAHFPINASITAANRGIEIRNFLGE 248 +G R+ +A +RT SHVQN+I GVT GFRYKMR VYAHFPIN I +EIRNFLGE Sbjct: 61 WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE 120 Query: 247 KKVRKVDMLDGVTILRSEKVKDEIVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIY 68 K +R+V M GV S+ KDE++L+GNDIELVS SAALI Q VKNKDIRKFLDGIY Sbjct: 121 KYIRRVRMRTGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY 180 Query: 67 VSDKGAIKE 41 VS+KG +++ Sbjct: 181 VSEKGTVQQ 189
>RL9_HUMAN (P32969) 60S ribosomal protein L9| Length = 192 Score = 160 bits (406), Expect = 9e-40 Identities = 81/129 (62%), Positives = 97/129 (75%) Frame = -1 Query: 427 FGTRRTMAAIRTAISHVQNLITGVTKGFRYKMRFVYAHFPINASITAANRGIEIRNFLGE 248 +G R+ +A +RT SHVQN+I GVT GFRYKMR VYAHFPIN I +EIRNFLGE Sbjct: 61 WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE 120 Query: 247 KKVRKVDMLDGVTILRSEKVKDEIVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIY 68 K +R+V M GV S+ KDE++L+GNDIELVS SAALI Q VKNKDIRKFLDGIY Sbjct: 121 KYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY 180 Query: 67 VSDKGAIKE 41 VS+KG +++ Sbjct: 181 VSEKGTVQQ 189
>RL9_BOVIN (Q3SYR7) 60S ribosomal protein L9| Length = 192 Score = 160 bits (406), Expect = 9e-40 Identities = 81/129 (62%), Positives = 97/129 (75%) Frame = -1 Query: 427 FGTRRTMAAIRTAISHVQNLITGVTKGFRYKMRFVYAHFPINASITAANRGIEIRNFLGE 248 +G R+ +A +RT SHVQN+I GVT GFRYKMR VYAHFPIN I +EIRNFLGE Sbjct: 61 WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE 120 Query: 247 KKVRKVDMLDGVTILRSEKVKDEIVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIY 68 K +R+V M GV S+ KDE++L+GNDIELVS SAALI Q VKNKDIRKFLDGIY Sbjct: 121 KYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY 180 Query: 67 VSDKGAIKE 41 VS+KG +++ Sbjct: 181 VSEKGTVQQ 189
>RL9B_YEAST (P51401) 60S ribosomal protein L9-B (L8) (YL11) (RP25)| Length = 191 Score = 156 bits (395), Expect = 2e-38 Identities = 81/131 (61%), Positives = 101/131 (77%), Gaps = 2/131 (1%) Frame = -1 Query: 424 GTRRTMAAIRTAISHVQNLITGVTKGFRYKMRFVYAHFPINASITAAN--RGIEIRNFLG 251 G R+ +AA+RT S V N+ITGVTKG++YKMR+VYAHFPIN +I + + IE+RNFLG Sbjct: 60 GDRKHVAALRTVKSLVDNMITGVTKGYKYKMRYVYAHFPINVNIVEKDGAKFIEVRNFLG 119 Query: 250 EKKVRKVDMLDGVTILRSEKVKDEIVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGI 71 +KK+R V + DGVTI S VKDEIVL GN +E VS++AA + Q C V+NKDIRKFLDGI Sbjct: 120 DKKIRNVPVRDGVTIEFSTNVKDEIVLSGNSVEDVSQNAADLQQICRVRNKDIRKFLDGI 179 Query: 70 YVSDKGAIKEE 38 YVS KG I E+ Sbjct: 180 YVSHKGFIVED 190
>RL9A_YEAST (P05738) 60S ribosomal protein L9-A (L8) (YL11) (RP25)| Length = 191 Score = 156 bits (395), Expect = 2e-38 Identities = 81/131 (61%), Positives = 101/131 (77%), Gaps = 2/131 (1%) Frame = -1 Query: 424 GTRRTMAAIRTAISHVQNLITGVTKGFRYKMRFVYAHFPINASITAAN--RGIEIRNFLG 251 G R+ +AA+RT S V N+ITGVTKG++YKMR+VYAHFPIN +I + + IE+RNFLG Sbjct: 60 GGRKHVAALRTVKSLVDNMITGVTKGYKYKMRYVYAHFPINVNIVEKDGAKFIEVRNFLG 119 Query: 250 EKKVRKVDMLDGVTILRSEKVKDEIVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGI 71 +KK+R V + DGVTI S VKDEIVL GN +E VS++AA + Q C V+NKDIRKFLDGI Sbjct: 120 DKKIRNVPVRDGVTIEFSTNVKDEIVLSGNSVEDVSQNAADLQQICRVRNKDIRKFLDGI 179 Query: 70 YVSDKGAIKEE 38 YVS KG I E+ Sbjct: 180 YVSHKGFITED 190
>RL9_CAEEL (Q95Y90) 60S ribosomal protein L9| Length = 189 Score = 156 bits (394), Expect = 2e-38 Identities = 78/127 (61%), Positives = 96/127 (75%) Frame = -1 Query: 427 FGTRRTMAAIRTAISHVQNLITGVTKGFRYKMRFVYAHFPINASITAANRGIEIRNFLGE 248 FG R+ +AAIRT SH++N+I GVT GFRYKMR VYAHFPIN ++ NR +EIRNFLGE Sbjct: 59 FGVRKELAAIRTVCSHIKNMIKGVTVGFRYKMRSVYAHFPINVTLQDGNRTVEIRNFLGE 118 Query: 247 KKVRKVDMLDGVTILRSEKVKDEIVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIY 68 K VR+V + +GV S KDEIV++GND++ VS++AA I Q VK KDIRKFLDGIY Sbjct: 119 KIVRRVPLPEGVIATISTAQKDEIVVEGNDVQFVSQAAARIQQSTAVKEKDIRKFLDGIY 178 Query: 67 VSDKGAI 47 VS+K I Sbjct: 179 VSEKTTI 185
>RL9B_SCHPO (O74905) 60S ribosomal protein L9-B| Length = 189 Score = 154 bits (390), Expect = 6e-38 Identities = 77/128 (60%), Positives = 98/128 (76%) Frame = -1 Query: 424 GTRRTMAAIRTAISHVQNLITGVTKGFRYKMRFVYAHFPINASITAANRGIEIRNFLGEK 245 G+R+ A IRTA S + N+I GVT+GFRYKMR VYAHFPIN ++T +EIRNFLGE+ Sbjct: 60 GSRKHNACIRTAYSIINNMIIGVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLGER 119 Query: 244 KVRKVDMLDGVTILRSEKVKDEIVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYV 65 R + L GVT+ S VKDEI+++GN +E VS+SAA I Q C+V+NKDIRKFLDGIYV Sbjct: 120 ITRVIKCLPGVTVSISSAVKDEIIIEGNSLENVSQSAANIKQICNVRNKDIRKFLDGIYV 179 Query: 64 SDKGAIKE 41 S++G I+E Sbjct: 180 SERGNIEE 187
>RL9A_SCHPO (Q10232) 60S ribosomal protein L9-A| Length = 190 Score = 152 bits (384), Expect = 3e-37 Identities = 76/128 (59%), Positives = 97/128 (75%) Frame = -1 Query: 424 GTRRTMAAIRTAISHVQNLITGVTKGFRYKMRFVYAHFPINASITAANRGIEIRNFLGEK 245 G+R+ A IR+ S + N+I GVT+GFRYKMR VYAHFPIN ++T +EIRNFLGE+ Sbjct: 60 GSRKHNACIRSVYSIINNMIIGVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLGER 119 Query: 244 KVRKVDMLDGVTILRSEKVKDEIVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYV 65 R + L GVT+ S VKDEI+L+GN +E VS+SAA I Q C+V+NKDIRKFLDGIYV Sbjct: 120 ITRVIKCLPGVTVSISSAVKDEIILEGNSLENVSQSAANIKQICNVRNKDIRKFLDGIYV 179 Query: 64 SDKGAIKE 41 S++G I+E Sbjct: 180 SERGNIEE 187
>RL6_PYRAB (Q9V1V1) 50S ribosomal protein L6P| Length = 184 Score = 97.4 bits (241), Expect = 1e-20 Identities = 54/125 (43%), Positives = 77/125 (61%), Gaps = 1/125 (0%) Frame = -1 Query: 427 FGTRRTMAAIRTAISHVQNLITGVTKGFRYKMRFVYAHFPINASITAANRGIEIRNFLGE 248 F R+ +A +RT +H+ N+I GVT+GF YK++ VY+HFPI + + I NFLGE Sbjct: 59 FPRRKDVAIVRTFKAHINNMIKGVTEGFTYKLKVVYSHFPITVKVQGDE--VIIENFLGE 116 Query: 247 KKVRKVDMLDGVTILRSEKVK-DEIVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGI 71 K R+ +L GVT+ KVK EI+++G D E V ++AA I Q + D R F DGI Sbjct: 117 KAPRRAKILPGVTV----KVKGQEIIVEGIDKEAVGQTAANIEQATRITKWDRRVFQDGI 172 Query: 70 YVSDK 56 Y+ +K Sbjct: 173 YIVEK 177
>RL6_PYRHO (O59433) 50S ribosomal protein L6P| Length = 184 Score = 95.9 bits (237), Expect = 4e-20 Identities = 53/125 (42%), Positives = 76/125 (60%), Gaps = 1/125 (0%) Frame = -1 Query: 427 FGTRRTMAAIRTAISHVQNLITGVTKGFRYKMRFVYAHFPINASITAANRGIEIRNFLGE 248 F R+ +A +RT +H+ N+I GVT+GF YK++ VY+HFPI + + I NFLGE Sbjct: 59 FPRRKDVAIVRTFKAHINNMIKGVTEGFTYKLKVVYSHFPITVKVQGDE--VIIENFLGE 116 Query: 247 KKVRKVDMLDGVTILRSEKVK-DEIVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGI 71 K R+ +L GVT+ KVK EI+++G D E ++AA I Q + D R F DGI Sbjct: 117 KAPRRAKILPGVTV----KVKGQEIIVEGIDKEATGQTAANIEQATRITKWDRRVFQDGI 172 Query: 70 YVSDK 56 Y+ +K Sbjct: 173 YIVEK 177
>RL9_HAECO (O02376) 60S ribosomal protein L9 (Fragment)| Length = 141 Score = 95.5 bits (236), Expect = 5e-20 Identities = 45/68 (66%), Positives = 53/68 (77%) Frame = -1 Query: 427 FGTRRTMAAIRTAISHVQNLITGVTKGFRYKMRFVYAHFPINASITAANRGIEIRNFLGE 248 FG R+ +AAIRT SH+QN+I GVTKGFRYKMR VYAHFPIN ++ R +EIRNFLGE Sbjct: 59 FGVRKEIAAIRTVCSHIQNMIKGVTKGFRYKMRSVYAHFPINVTLQDGGRTVEIRNFLGE 118 Query: 247 KKVRKVDM 224 K VR V + Sbjct: 119 KIVRPVPL 126
>RL6_SULSO (Q9UX91) 50S ribosomal protein L6P| Length = 181 Score = 93.6 bits (231), Expect = 2e-19 Identities = 48/129 (37%), Positives = 78/129 (60%), Gaps = 1/129 (0%) Frame = -1 Query: 427 FGTRRTMAAIRTAISHVQNLITGVTKGFRYKMRFVYAHFPINASITAANRGIEIRNFLGE 248 F RR A + +SH++N+ITGVTKG+RY ++ +Y HFP S+ ++I N +GE Sbjct: 59 FANRRKKAVFYSIVSHIKNMITGVTKGYRYYLKIIYTHFP--TSVKVVGNEVQITNLIGE 116 Query: 247 KKVRKVDMLDGVTILRSEKVK-DEIVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGI 71 K R+ +L+GV + VK ++IV++G ++E V+++AA I + D R F DGI Sbjct: 117 KNTRRAQILEGVKV----TVKGEDIVVEGPNLEAVAQTAANIESASKISGFDRRIFSDGI 172 Query: 70 YVSDKGAIK 44 ++ K I+ Sbjct: 173 FIYKKEVIE 181
>RL6_AERPE (Q9YF91) 50S ribosomal protein L6P| Length = 182 Score = 93.2 bits (230), Expect = 2e-19 Identities = 50/128 (39%), Positives = 78/128 (60%), Gaps = 1/128 (0%) Frame = -1 Query: 427 FGTRRTMAAIRTAISHVQNLITGVTKGFRYKMRFVYAHFPINASITAANRGIEIRNFLGE 248 F R A + H++N+I GV GFRYK++ +Y+HFPIN + I NFLGE Sbjct: 60 FAKARQRALVGAIAGHIRNMIKGVQGGFRYKLKIMYSHFPINVKVEGDK--FIISNFLGE 117 Query: 247 KKVRKVDMLDGVTILRSEKVK-DEIVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGI 71 K +R ++ GV + +VK +++++G D+E V+++AA I VK+KD RKF+DGI Sbjct: 118 KGLRIARIMPGVKV----QVKGSDVIVEGIDVEKVAQTAANIELATKVKDKDRRKFMDGI 173 Query: 70 YVSDKGAI 47 Y+ ++ I Sbjct: 174 YIYEREVI 181
>RL6_METJA (P54042) 50S ribosomal protein L6P| Length = 182 Score = 92.8 bits (229), Expect = 3e-19 Identities = 48/121 (39%), Positives = 75/121 (61%) Frame = -1 Query: 418 RRTMAAIRTAISHVQNLITGVTKGFRYKMRFVYAHFPINASITAANRGIEIRNFLGEKKV 239 R+ A + T +H+ N+I GVT+GF YK++ YAHFP+ S+ + I NFLGEK Sbjct: 62 RKDKAMVGTIRAHINNMIKGVTEGFTYKLKIRYAHFPMKVSV--KGNEVIIENFLGEKHP 119 Query: 238 RKVDMLDGVTILRSEKVKDEIVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSD 59 R+ +++GVT+ S +++++ G D E V ++AA I Q +K +D R F DGIY+ + Sbjct: 120 RRARIMEGVTVKIS---GEDVIVTGIDKEKVGQTAANIEQATRIKGRDPRVFQDGIYIVE 176 Query: 58 K 56 K Sbjct: 177 K 177
>RL6_METVA (P14030) 50S ribosomal protein L6P| Length = 182 Score = 90.9 bits (224), Expect = 1e-18 Identities = 51/125 (40%), Positives = 75/125 (60%), Gaps = 1/125 (0%) Frame = -1 Query: 427 FGTRRTMAAIRTAISHVQNLITGVTKGFRYKMRFVYAHFPINASITAANRGIEIRNFLGE 248 F + A + T SH+QN+I GV++GF YK+ YAHFP+ +T + I NFLGE Sbjct: 59 FPKKNQTAMVGTYRSHIQNMIKGVSEGFEYKLVIRYAHFPM--KVTFKGNTVIIDNFLGE 116 Query: 247 KKVRKVDMLDGVTILRSEKVK-DEIVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGI 71 K R +++GVT+ KV +E+++ G + E V ++AA I Q VK +D R F DGI Sbjct: 117 KYPRTAKVMEGVTV----KVNGEEVIVSGTNKEFVGQTAANIEQATKVKGRDTRIFQDGI 172 Query: 70 YVSDK 56 Y+ +K Sbjct: 173 YIVEK 177
>RL6_METTH (O26127) 50S ribosomal protein L6P| Length = 177 Score = 86.3 bits (212), Expect = 3e-17 Identities = 50/125 (40%), Positives = 73/125 (58%), Gaps = 1/125 (0%) Frame = -1 Query: 427 FGTRRTMAAIRTAISHVQNLITGVTKGFRYKMRFVYAHFPINASITAANRGIEIRNFLGE 248 F ++ A I T +H+ N+ITGVT+GFRY+M+ VYAHFP+ S+ A + I NFLGE Sbjct: 58 FPKKKDKAMIGTVRAHISNMITGVTEGFRYRMKIVYAHFPM--SVKVAGDKVVIENFLGE 115 Query: 247 KKVRKVDMLDGVTILRSEKVK-DEIVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGI 71 + R + + +VK DE+ + G + E V ++ A I Q +K +D R F DGI Sbjct: 116 RHPRTARFVGDTKV----QVKGDEVEITGINKEHVGQTMANIEQATKIKGRDPRVFQDGI 171 Query: 70 YVSDK 56 Y+ K Sbjct: 172 YLVSK 176
>RL6_SULAC (O05637) 50S ribosomal protein L6P| Length = 189 Score = 85.1 bits (209), Expect = 6e-17 Identities = 46/128 (35%), Positives = 76/128 (59%), Gaps = 1/128 (0%) Frame = -1 Query: 427 FGTRRTMAAIRTAISHVQNLITGVTKGFRYKMRFVYAHFPINASITAANRGIEIRNFLGE 248 F RR A + + I+H++N+ITG G+RY ++ + HFPI S+ + +++ N +GE Sbjct: 62 FADRRKKALLYSIIAHIKNMITGTINGYRYYLKVISTHFPI--SVKVSGDEVQVSNLIGE 119 Query: 247 KKVRKVDMLDGVTILRSEKVK-DEIVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGI 71 K +R+ +L GV + VK ++IV++G+DI V+++AA I + D R F DGI Sbjct: 120 KNIRRAKILPGVKV----TVKGEDIVVEGSDIYNVAQTAANIESSTKIVGYDRRIFSDGI 175 Query: 70 YVSDKGAI 47 Y+ K I Sbjct: 176 YIYKKEVI 183
>RL6_HALMA (P14135) 50S ribosomal protein L6P (Hmal6) (Hl10)| Length = 177 Score = 84.0 bits (206), Expect = 1e-16 Identities = 44/120 (36%), Positives = 70/120 (58%) Frame = -1 Query: 415 RTMAAIRTAISHVQNLITGVTKGFRYKMRFVYAHFPINASITAANRGIEIRNFLGEKKVR 236 +TM+ I T SH++N+ GVT+G+ Y M Y+HFP+ ++ + I NFLGEK R Sbjct: 57 KTMSTIGTFQSHIENMFHGVTEGWEYGMEVFYSHFPMQVNVEGDE--VVIENFLGEKAPR 114 Query: 235 KVDMLDGVTILRSEKVKDEIVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSDK 56 + + + E +E+ + G DIE V ++AA I Q + +KD+R F DG+Y++ K Sbjct: 115 RTTIHGDTDV---EIDGEELTVSGPDIEAVGQTAADIEQLTRINDKDVRVFQDGVYITRK 171
>RL6_ARCFU (O28370) 50S ribosomal protein L6P| Length = 196 Score = 80.9 bits (198), Expect = 1e-15 Identities = 45/121 (37%), Positives = 67/121 (55%) Frame = -1 Query: 418 RRTMAAIRTAISHVQNLITGVTKGFRYKMRFVYAHFPINASITAANRGIEIRNFLGEKKV 239 ++ A + T H++NLITGV +GF Y ++ VYAHFPI + + I NF+GEK Sbjct: 80 KKHKAMVGTFAGHIENLITGVKEGFEYHLKVVYAHFPI--KVRVEGNEVIIENFIGEKHP 137 Query: 238 RKVDMLDGVTILRSEKVKDEIVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSD 59 R+ ++ + E +I + G DIE ++AA + Q +K KD R F DGIY+ Sbjct: 138 RRAKIVGRAQV---EISGQDIYVRGIDIEECGQTAANLEQATKIKRKDPRVFQDGIYIVK 194 Query: 58 K 56 K Sbjct: 195 K 195
>RL6_HALSA (Q9HPB8) 50S ribosomal protein L6P (HL10)| Length = 177 Score = 79.7 bits (195), Expect = 3e-15 Identities = 43/122 (35%), Positives = 69/122 (56%) Frame = -1 Query: 415 RTMAAIRTAISHVQNLITGVTKGFRYKMRFVYAHFPINASITAANRGIEIRNFLGEKKVR 236 +T + + T SHV N+ GV++G+ YK+ Y+HFP+ + + I+NFLGEK R Sbjct: 57 KTDSTVGTFESHVANMFHGVSEGWEYKLEVHYSHFPMQVDVEGEE--VVIQNFLGEKAAR 114 Query: 235 KVDMLDGVTILRSEKVKDEIVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSDK 56 + + ++ + +E+ L G IE V ++AA I Q V +KD R F DG+Y+ +K Sbjct: 115 RTQIRGDTDVVVDD---EEVTLSGPSIEDVGQTAADIEQLTRVTDKDTRVFQDGVYIVEK 171 Query: 55 GA 50 A Sbjct: 172 PA 173
>RL6_RHOPA (Q6N4U8) 50S ribosomal protein L6 (RRP-L6)| Length = 176 Score = 37.0 bits (84), Expect = 0.019 Identities = 30/99 (30%), Positives = 46/99 (46%) Frame = -1 Query: 421 TRRTMAAIRTAISHVQNLITGVTKGFRYKMRFVYAHFPINASITAANRGIEIRNFLGEKK 242 T R A TA + + NL+ GVTKGF K+ AA +G +++ LG Sbjct: 57 TNRARALYGTARAQIANLVEGVTKGFEKKLEIT------GVGYRAAMQGKKLQLALGYSH 110 Query: 241 VRKVDMLDGVTILRSEKVKDEIVLDGNDIELVSRSAALI 125 D+ +G+TI + + +V G D + V + AA I Sbjct: 111 DVLYDIPEGITITVPKPTEINVV--GIDPQKVGQVAAEI 147
>LOLC_BUCAP (Q8K9N8) Lipoprotein-releasing system transmembrane protein lolC| Length = 399 Score = 32.3 bits (72), Expect = 0.48 Identities = 28/104 (26%), Positives = 50/104 (48%) Frame = -1 Query: 358 VTKGFRYKMRFVYAHFPINASITAANRGIEIRNFLGEKKVRKVDMLDGVTILRSEKVKDE 179 + GF+ K + F + IT NR I NF K+ K+ ++ +T S+KV Sbjct: 47 IMNGFQNKFKNDILSFIPHIIITNKNRNINKLNF--PKETLKLKNVEEITDFISKKV--- 101 Query: 178 IVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSDKGAI 47 I+ + N+I + I + +++N +I+KFL ++ AI Sbjct: 102 IIENKNEINIGEIIGINIKNEKNLENYNIKKFLHTLHSRKYNAI 145
>RL6_MYCCT (P04448) 50S ribosomal protein L6| Length = 180 Score = 32.0 bits (71), Expect = 0.62 Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 1/91 (1%) Frame = -1 Query: 394 TAISHVQNLITGVTKGFRYKMRFVYAHFPINASITAANRGIEIRNFLGEKKVRKVDMLDG 215 T S +Q ++TGV++GF+ +++ AA G ++ LG + ++ DG Sbjct: 68 TTNSLLQGMLTGVSEGFKKELQIT------GVGYKAAVNGSKLNLSLGYSHPVEFEIPDG 121 Query: 214 VTILRSEKVK-DEIVLDGNDIELVSRSAALI 125 V I + VK E+ + G D +LV + AA I Sbjct: 122 VVI---QAVKPTELAITGIDKQLVGQVAANI 149
>VE1_HPV58 (P26543) Replication protein E1 (EC 3.6.1.-) (ATP-dependent| helicase E1) Length = 644 Score = 30.0 bits (66), Expect = 2.4 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 2/43 (4%) Frame = -1 Query: 235 KVDMLDGVTILRSEKVKDEI--VLDGNDIELVSRSAALINQKC 113 K+ M+D VT + + D + LDGNDI + + AL+ KC Sbjct: 510 KLGMIDDVTAISWTYIDDYMRNALDGNDISIDVKHRALVQLKC 552
>MTERF_PONPY (Q5R9U8) Transcription termination factor, mitochondrial precursor| (mTERF) (Mitochondrial transcription termination factor 1) Length = 398 Score = 29.6 bits (65), Expect = 3.1 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 1/57 (1%) Frame = -1 Query: 259 FLGEKKVR-KVDMLDGVTILRSEKVKDEIVLDGNDIELVSRSAALINQKCHVKNKDI 92 FL EKK K+D L I S+ +++ VLD + L SR L+N C++ +I Sbjct: 321 FLAEKKFNDKIDCLMEENISISQIIENPRVLDSSISTLKSRIKELVNAGCNLSTLNI 377
>MTERF_HUMAN (Q99551) Transcription termination factor, mitochondrial precursor| (mTERF) (Mitochondrial transcription termination factor 1) Length = 399 Score = 29.6 bits (65), Expect = 3.1 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 1/57 (1%) Frame = -1 Query: 259 FLGEKKVR-KVDMLDGVTILRSEKVKDEIVLDGNDIELVSRSAALINQKCHVKNKDI 92 FL EKK K+D L I S+ +++ VLD + L SR L+N C++ +I Sbjct: 322 FLAEKKFNDKIDCLMEENISISQIIENPRVLDSSISTLKSRIKELVNAGCNLSTLNI 378
>RL6_BUCAK (P46181) 50S ribosomal protein L6| Length = 177 Score = 29.3 bits (64), Expect = 4.0 Identities = 26/98 (26%), Positives = 44/98 (44%) Frame = -1 Query: 424 GTRRTMAAIRTAISHVQNLITGVTKGFRYKMRFVYAHFPINASITAANRGIEIRNFLGEK 245 G R A T + + ++ GVT+GF K++ V AA +G + LG Sbjct: 57 GFRNAWAQAGTTRALLNAMVVGVTEGFTKKLQLV------GVGYRAAVKGNVVNLALGFS 110 Query: 244 KVRKVDMLDGVTILRSEKVKDEIVLDGNDIELVSRSAA 131 + + G+T + EIVL G D +++ ++AA Sbjct: 111 HPIEHQLPAGITAECPSQT--EIVLKGVDKQVIGQAAA 146
>RL6_MYCPN (Q50303) 50S ribosomal protein L6| Length = 184 Score = 28.9 bits (63), Expect = 5.3 Identities = 26/87 (29%), Positives = 39/87 (44%) Frame = -1 Query: 379 VQNLITGVTKGFRYKMRFVYAHFPINASITAANRGIEIRNFLGEKKVRKVDMLDGVTILR 200 + N I GVT+GF K+R V + N G + LG K + G+T+ + Sbjct: 75 ITNAIIGVTQGFEKKLRLVGVGYRANV------EGETLNLQLGYSHPIKEKIPKGLTV-K 127 Query: 199 SEKVKDEIVLDGNDIELVSRSAALINQ 119 EK EI + G ELV + A + + Sbjct: 128 VEK-NTEITISGISKELVGQFATEVRK 153
>VE1_HPV52 (P36730) Replication protein E1 (EC 3.6.1.-) (ATP-dependent| helicase E1) Length = 647 Score = 28.9 bits (63), Expect = 5.3 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 2/43 (4%) Frame = -1 Query: 235 KVDMLDGVTILRSEKVKDEI--VLDGNDIELVSRSAALINQKC 113 KV M+D VT + + D + LDGNDI + + AL+ KC Sbjct: 513 KVGMIDDVTPICWTYIDDYMRNALDGNDISVDVKHRALVQIKC 555
>VE1_HPV33 (P06421) Replication protein E1 (EC 3.6.1.-) (ATP-dependent| helicase E1) Length = 644 Score = 28.5 bits (62), Expect = 6.9 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 2/43 (4%) Frame = -1 Query: 235 KVDMLDGVTILRSEKVKDEI--VLDGNDIELVSRSAALINQKC 113 K+ M+D VT + + D + LDGN+I + + AL+ KC Sbjct: 510 KIGMIDDVTPISWTYIDDYMRNALDGNEISIDVKHRALVQLKC 552
>FIMB_SCHPO (O59945) Fimbrin| Length = 614 Score = 28.1 bits (61), Expect = 9.0 Identities = 18/59 (30%), Positives = 30/59 (50%) Frame = -1 Query: 304 NASITAANRGIEIRNFLGEKKVRKVDMLDGVTILRSEKVKDEIVLDGNDIELVSRSAAL 128 N+ +G +IR+F V +LD + ++SE V +V DG+ EL ++A L Sbjct: 519 NSMAAKGGKGSQIRSFRDPSISTGVFVLDVLHGIKSEYVDYNLVTDGSTEELAIQNARL 577
>Y1672_HAEIN (P44288) Protein HI1672| Length = 881 Score = 28.1 bits (61), Expect = 9.0 Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 17/101 (16%) Frame = -1 Query: 319 AHFPINASITAANRGIEIRNFL--------GEKKVRKVDMLDGVTILRSEKVKDEIVLDG 164 +HF + ++ AA RGIEI+ + G+ +V D G+ S ++ +L+G Sbjct: 272 SHFTLYTNLKAAKRGIEIKVTIPASSALIAGQTEVYSQDNAIGILAKLSAVENNDEILEG 331 Query: 163 N-DIELVSRSAALINQKCHVKNKDI--------RKFLDGIY 68 + I+ S N K ++NK I +KF G Y Sbjct: 332 SLLIDPNQASLFKANSKIVLRNKKIDLGNLAEPKKFFRGEY 372
>RL6_VIBCH (Q9KNZ9) 50S ribosomal protein L6| Length = 177 Score = 28.1 bits (61), Expect = 9.0 Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 1/99 (1%) Frame = -1 Query: 424 GTRRTMAAIRTAISHVQNLITGVTKGFRYKMRFVYAHFPINASITAANRGIEIRNFLGEK 245 G A TA + V+N++ GVT+GF K+ AA +G + LG Sbjct: 57 GVANAWAQAGTARALVKNMVVGVTEGFTKKLVLK------GVGYRAAMKGNAVGLTLGFS 110 Query: 244 KVRKVDMLDGVTILRSE-KVKDEIVLDGNDIELVSRSAA 131 + ++ GV ++E + EIVL G D ++V + AA Sbjct: 111 HPVEHELPAGV---KAECPSQTEIVLTGCDKQVVGQVAA 146
>ATG2_CRYNE (Q5KMS0) Autophagy-related protein 2| Length = 1935 Score = 28.1 bits (61), Expect = 9.0 Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 12/80 (15%) Frame = -1 Query: 244 KVRKVDMLDGVTILRSEKVKDEIVLDG--NDIEL----------VSRSAALINQKCHVKN 101 + K L G ++RS+K + EI L G D++L V +A + H+K Sbjct: 1494 QAHKKTRLKGKRLVRSKKAQIEITLSGIKTDVDLYPTEESTSSRVHFTAKEMEILDHIKT 1553 Query: 100 KDIRKFLDGIYVSDKGAIKE 41 +KFL + ++G I+E Sbjct: 1554 STWKKFLTEMKADNRGNIRE 1573
>FTSW_ECOLI (P0ABG4) Cell division protein ftsW| Length = 414 Score = 28.1 bits (61), Expect = 9.0 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 4/61 (6%) Frame = +3 Query: 57 LSLT*IPSKNFLISLFLTWHFWLMRAAERETSSMSLPSRTISSLTFSDRK----MVTPSS 224 L + +P + L+ + W+M + E++T S+ + RT+ LTF MVT +S Sbjct: 8 LKMPRLPGFSILVWISTALKGWVMGSREKDTDSLIMYDRTLLWLTFGLAAIGFIMVTSAS 67 Query: 225 M 227 M Sbjct: 68 M 68
>FTSW_ECOL6 (P0ABG5) Cell division protein ftsW| Length = 414 Score = 28.1 bits (61), Expect = 9.0 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 4/61 (6%) Frame = +3 Query: 57 LSLT*IPSKNFLISLFLTWHFWLMRAAERETSSMSLPSRTISSLTFSDRK----MVTPSS 224 L + +P + L+ + W+M + E++T S+ + RT+ LTF MVT +S Sbjct: 8 LKMPRLPGFSILVWISTALKGWVMGSREKDTDSLIMYDRTLLWLTFGLAAIGFIMVTSAS 67 Query: 225 M 227 M Sbjct: 68 M 68
>FTSW_ECO57 (P0ABG6) Cell division protein ftsW| Length = 414 Score = 28.1 bits (61), Expect = 9.0 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 4/61 (6%) Frame = +3 Query: 57 LSLT*IPSKNFLISLFLTWHFWLMRAAERETSSMSLPSRTISSLTFSDRK----MVTPSS 224 L + +P + L+ + W+M + E++T S+ + RT+ LTF MVT +S Sbjct: 8 LKMPRLPGFSILVWISTALKGWVMGSREKDTDSLIMYDRTLLWLTFGLAAIGFIMVTSAS 67 Query: 225 M 227 M Sbjct: 68 M 68
>KEL2_YEAST (P50090) Kelch repeat-containing protein 2| Length = 882 Score = 28.1 bits (61), Expect = 9.0 Identities = 20/86 (23%), Positives = 41/86 (47%), Gaps = 1/86 (1%) Frame = -1 Query: 292 TAANRGIEIRNFLGEKKVRKVDMLDGVTILRSEKVKDEIVLDGNDIELVSRSAALINQKC 113 TA + +EI+ E ++ + L V + ++ K+ D+I + N ++ S + Sbjct: 602 TARLKNLEIQKTFLESRINDLKNLLMVKLSQASKLCDQITIQNNGLKTCSEHVTIKRDII 661 Query: 112 HVKNK-DIRKFLDGIYVSDKGAIKEE 38 ++NK D+ K + I V++ I E Sbjct: 662 DLENKCDVLKRQNEILVNNMQKITPE 687 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 33,886,912 Number of Sequences: 219361 Number of extensions: 515819 Number of successful extensions: 2078 Number of sequences better than 10.0: 46 Number of HSP's better than 10.0 without gapping: 2030 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2059 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2336739400 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)