Clone Information

BLAST Search Result

Clone Name	rbags10j20
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|AC108876.2\| Oryza sativa (japonica cultivar-group) chromosome...	159	1e-35
2	gb\|AC117265.2\| Oryza sativa (japonica cultivar-group) chromosome...	159	1e-35
3	dbj\|AP008211.1\| Oryza sativa (japonica cultivar-group) genomic D...	159	1e-35
4	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	103	7e-19
5	dbj\|AP004367.4\| Oryza sativa (japonica cultivar-group) genomic D...	103	7e-19
6	ref\|NM_202539.1\| Arabidopsis thaliana unknown protein AT3G09560 ...	66	2e-07
7	ref\|NM_111790.3\| Arabidopsis thaliana unknown protein AT3G09560 ...	66	2e-07
8	emb\|BX824069.1\|CNS0A7EB Arabidopsis thaliana Full-length cDNA Co...	66	2e-07
9	gb\|AC120885.3\| Oryza sativa (japonica cultivar-group) chromosome...	60	1e-05
10	dbj\|AP008217.1\| Oryza sativa (japonica cultivar-group) genomic D...	60	1e-05
11	dbj\|AK062893.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	60	1e-05
12	gb\|DP000010.1\| Oryza sativa (japonica cultivar-group) chromosome...	60	1e-05
13	ref\|NM_123652.2\| Arabidopsis thaliana unknown protein AT5G42870 ...	50	0.010
14	dbj\|AB008264.1\| Arabidopsis thaliana genomic DNA, chromosome 5, ...	50	0.010
15	gb\|AC016661.7\|AC016661 Arabidopsis thaliana chromosome 3 BAC F11...	48	0.038
16	ref\|XM_717419.1\| Candida albicans SC5314 hypothetical protein (C...	44	0.59
17	ref\|XM_717280.1\| Candida albicans SC5314 hypothetical protein (C...	44	0.59
18	gb\|AC157645.8\| Medicago truncatula clone mth2-70l21, complete se...	44	0.59
19	gb\|AC007440.6\|AC007440 Drosophila melanogaster, chromosome 2R, r...	44	0.59
20	dbj\|AP003578.1\| Oryza sativa (japonica cultivar-group) genomic D...	44	0.59
21	dbj\|AP002883.2\| Oryza sativa (japonica cultivar-group) genomic D...	44	0.59
22	gb\|AE003823.3\| Drosophila melanogaster chromosome 2R, section 27...	44	0.59
23	emb\|BX004796.6\| Mouse DNA sequence from clone RP23-345M13 on chr...	44	0.59
24	emb\|AL935054.11\| Mouse DNA sequence from clone RP23-280A12 on ch...	42	2.3
25	gb\|AC021657.19\| Homo sapiens 3 BAC RP11-490B19 (Roswell Park Can...	42	2.3
26	gb\|AC078843.2\|AC078843 Homo sapiens chromosome 7 clone RP11-59F6...	42	2.3
27	gb\|AC009530.5\|AC009530 Homo sapiens chromosome 7 clone RP11-302L...	42	2.3
28	ref\|XM_640978.1\| Dictyostelium discoideum ABC transporter G fami...	40	9.2
29	gb\|AC102490.7\| Mus musculus chromosome 1, clone RP24-512M8, comp...	40	9.2
30	gb\|AC137004.2\| Oryza sativa (japonica cultivar-group) chromosome...	40	9.2
31	emb\|CR719086.2\|CNS0GHSK Tetraodon nigroviridis full-length cDNA	40	9.2
32	emb\|CR716556.2\|CNS0GFUD Tetraodon nigroviridis full-length cDNA	40	9.2
33	emb\|CR687269.2\|CNS0FT8X Tetraodon nigroviridis full-length cDNA	40	9.2
34	emb\|CR675396.2\|CNS0FK3U Tetraodon nigroviridis full-length cDNA	40	9.2
35	emb\|CR672529.2\|CNS0FHW7 Tetraodon nigroviridis full-length cDNA	40	9.2
36	emb\|CR642450.2\|CNS0EUOO Tetraodon nigroviridis full-length cDNA	40	9.2
37	emb\|CR641663.2\|CNS0EU2T Tetraodon nigroviridis full-length cDNA	40	9.2
38	gb\|CP000053.1\| Rickettsia felis URRWXCal2, complete genome	40	9.2
39	ref\|XM_503343.1\| Yarrowia lipolytica CLIB122, YALI0D27016g predi...	40	9.2
40	gb\|AC114806.5\| Homo sapiens BAC clone RP11-1251F13 from 4, compl...	40	9.2
41	gb\|AC079264.23\| Homo sapiens Xp BAC RP11-315B16 (Roswell Park Ca...	40	9.2
42	gb\|AF482392.1\| Dictyostelium discoideum ABC transporter AbcG14 (...	40	9.2
43	gb\|AF037042.2\|AF037042 Dictyostelium discoideum ras-related GTPa...	40	9.2
44	gb\|AC154843.2\| Mus musculus BAC clone RP23-58N15 from chromosome...	40	9.2
45	gb\|AC087901.20\| Mus musculus strain C57BL/6J chromosome 17 clone...	40	9.2
46	emb\|CR382130.1\| Yarrowia lipolytica chromosome D of strain CLIB1...	40	9.2
47	emb\|AL672278.12\| Mouse DNA sequence from clone RP23-465H23 on ch...	40	9.2

>gb|AC108876.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1525_A02,
             complete sequence
          Length = 93826

 Score =  159 bits (80), Expect = 1e-35
 Identities = 119/132 (90%)
 Strand = Plus / Plus

                                                                         
Query: 520   ccttggggttgatgataaaaatcttgcctttcgaaattcccatctttttgtatgtaagct 579
             |||| |||||||||||||| || || ||||| | ||||||||||||||||||  ||||||
Sbjct: 57545 cctttgggttgatgataaagattttcccttttggaattcccatctttttgtaactaagct 57604

                                                                         
Query: 580   catcagtgtctctgttgccaaatccagcataaaatggattgtagtcggaaggaaaaagtg 639
             |||| || ||||||||||||||||||||||||||||||||||| || ||||| |||||||
Sbjct: 57605 catctgtatctctgttgccaaatccagcataaaatggattgtaatcagaagggaaaagtg 57664

                         
Query: 640   ctttaatgtcct 651
             ||||||||||||
Sbjct: 57665 ctttaatgtcct 57676



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 62/68 (91%)
 Strand = Plus / Plus

                                                                         
Query: 358   aactacactacaaatcaacgtctggcagtggcaccttccagtaattccatgagttgtagt 417
             |||||||||||| |||||| ||||||| ||||| ||||||||||||||| || |||||||
Sbjct: 57015 aactacactacagatcaacatctggcaatggcatcttccagtaattccaggaattgtagt 57074

                     
Query: 418   cttcctgc 425
             ||||||||
Sbjct: 57075 cttcctgc 57082



 Score = 83.8 bits (42), Expect = 7e-13
 Identities = 87/102 (85%)
 Strand = Plus / Plus

                                                                         
Query: 421   cctgctcaaccaaagttgttggagggaacatgtcattgacaagagtatgcaaggaggtat 480
             |||||||||| | ||| |||||||||||||| |||| |||||| ||||| ||||||||||
Sbjct: 57367 cctgctcaacaagagtggttggagggaacatatcatggacaagggtatgtaaggaggtat 57426

                                                       
Query: 481   atgacttcacatcaactgaactattgatggccacttcaccct 522
             | |||||||| || || ||||| || ||||| ||||| ||||
Sbjct: 57427 aggacttcacgtcgacagaactgtttatggctacttccccct 57468



 Score = 40.1 bits (20), Expect = 9.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 137   cagatcactacctaaaagatgaatgatc 164
             ||||||||| ||||||||||| ||||||
Sbjct: 56800 cagatcactccctaaaagatgtatgatc 56827

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>gb|AC117265.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1281_H05,
              complete sequence
          Length = 163130

 Score =  159 bits (80), Expect = 1e-35
 Identities = 119/132 (90%)
 Strand = Plus / Plus

                                                                          
Query: 520    ccttggggttgatgataaaaatcttgcctttcgaaattcccatctttttgtatgtaagct 579
              |||| |||||||||||||| || || ||||| | ||||||||||||||||||  ||||||
Sbjct: 151902 cctttgggttgatgataaagattttcccttttggaattcccatctttttgtaactaagct 151961

                                                                          
Query: 580    catcagtgtctctgttgccaaatccagcataaaatggattgtagtcggaaggaaaaagtg 639
              |||| || ||||||||||||||||||||||||||||||||||| || ||||| |||||||
Sbjct: 151962 catctgtatctctgttgccaaatccagcataaaatggattgtaatcagaagggaaaagtg 152021

                          
Query: 640    ctttaatgtcct 651
              ||||||||||||
Sbjct: 152022 ctttaatgtcct 152033



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 62/68 (91%)
 Strand = Plus / Plus

                                                                          
Query: 358    aactacactacaaatcaacgtctggcagtggcaccttccagtaattccatgagttgtagt 417
              |||||||||||| |||||| ||||||| ||||| ||||||||||||||| || |||||||
Sbjct: 151372 aactacactacagatcaacatctggcaatggcatcttccagtaattccaggaattgtagt 151431

                      
Query: 418    cttcctgc 425
              ||||||||
Sbjct: 151432 cttcctgc 151439



 Score = 83.8 bits (42), Expect = 7e-13
 Identities = 87/102 (85%)
 Strand = Plus / Plus

                                                                          
Query: 421    cctgctcaaccaaagttgttggagggaacatgtcattgacaagagtatgcaaggaggtat 480
              |||||||||| | ||| |||||||||||||| |||| |||||| ||||| ||||||||||
Sbjct: 151724 cctgctcaacaagagtggttggagggaacatatcatggacaagggtatgtaaggaggtat 151783

                                                        
Query: 481    atgacttcacatcaactgaactattgatggccacttcaccct 522
              | |||||||| || || ||||| || ||||| ||||| ||||
Sbjct: 151784 aggacttcacgtcgacagaactgtttatggctacttccccct 151825



 Score = 40.1 bits (20), Expect = 9.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 137    cagatcactacctaaaagatgaatgatc 164
              ||||||||| ||||||||||| ||||||
Sbjct: 151157 cagatcactccctaaaagatgtatgatc 151184

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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  159 bits (80), Expect = 1e-35
 Identities = 119/132 (90%)
 Strand = Plus / Plus

                                                                            
Query: 520      ccttggggttgatgataaaaatcttgcctttcgaaattcccatctttttgtatgtaagct 579
                |||| |||||||||||||| || || ||||| | ||||||||||||||||||  ||||||
Sbjct: 22562495 cctttgggttgatgataaagattttcccttttggaattcccatctttttgtaactaagct 22562554

                                                                            
Query: 580      catcagtgtctctgttgccaaatccagcataaaatggattgtagtcggaaggaaaaagtg 639
                |||| || ||||||||||||||||||||||||||||||||||| || ||||| |||||||
Sbjct: 22562555 catctgtatctctgttgccaaatccagcataaaatggattgtaatcagaagggaaaagtg 22562614

                            
Query: 640      ctttaatgtcct 651
                ||||||||||||
Sbjct: 22562615 ctttaatgtcct 22562626



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 62/68 (91%)
 Strand = Plus / Plus

                                                                            
Query: 358      aactacactacaaatcaacgtctggcagtggcaccttccagtaattccatgagttgtagt 417
                |||||||||||| |||||| ||||||| ||||| ||||||||||||||| || |||||||
Sbjct: 22561965 aactacactacagatcaacatctggcaatggcatcttccagtaattccaggaattgtagt 22562024

                        
Query: 418      cttcctgc 425
                ||||||||
Sbjct: 22562025 cttcctgc 22562032



 Score = 83.8 bits (42), Expect = 7e-13
 Identities = 87/102 (85%)
 Strand = Plus / Plus

                                                                            
Query: 421      cctgctcaaccaaagttgttggagggaacatgtcattgacaagagtatgcaaggaggtat 480
                |||||||||| | ||| |||||||||||||| |||| |||||| ||||| ||||||||||
Sbjct: 22562317 cctgctcaacaagagtggttggagggaacatatcatggacaagggtatgtaaggaggtat 22562376

                                                          
Query: 481      atgacttcacatcaactgaactattgatggccacttcaccct 522
                | |||||||| || || ||||| || ||||| ||||| ||||
Sbjct: 22562377 aggacttcacgtcgacagaactgtttatggctacttccccct 22562418



 Score = 40.1 bits (20), Expect = 9.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                            
Query: 137      cagatcactacctaaaagatgaatgatc 164
                ||||||||| ||||||||||| ||||||
Sbjct: 22561750 cagatcactccctaaaagatgtatgatc 22561777



 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 118      cgacgacggcgatgaccatc 137
                ||||||||||||||||||||
Sbjct: 21694467 cgacgacggcgatgaccatc 21694486

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  103 bits (52), Expect = 7e-19
 Identities = 97/112 (86%)
 Strand = Plus / Plus

                                                                            
Query: 520      ccttggggttgatgataaaaatcttgcctttcgaaattcccatctttttgtatgtaagct 579
                |||| |||||||||||||| || || ||||| | ||||||||||||||||||  ||||||
Sbjct: 25536426 ccttcgggttgatgataaagattttcccttttggaattcccatctttttgtaactaagct 25536485

                                                                    
Query: 580      catcagtgtctctgttgccaaatccagcataaaatggattgtagtcggaagg 631
                 ||| || ||||||||| ||||||||| ||||||||||||||| || |||||
Sbjct: 25536486 tatctgtatctctgttgacaaatccagaataaaatggattgtaatcagaagg 25536537



 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 65/75 (86%)
 Strand = Plus / Plus

                                                                            
Query: 351      ttgtcaaaactacactacaaatcaacgtctggcagtggcaccttccagtaattccatgag 410
                |||| |||||||||||||| |||||| | |||   ||||| ||||||||||||||| || 
Sbjct: 25535459 ttgttaaaactacactacagatcaacatttggagatggcatcttccagtaattccaggaa 25535518

                               
Query: 411      ttgtagtcttcctgc 425
                |||||||||||||||
Sbjct: 25535519 ttgtagtcttcctgc 25535533



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                           
Query: 439      ttggagggaacatgtcattgacaagagtatgcaaggaggtata 481
                ||||||||||||| |||| || ||| ||||| |||||||||||
Sbjct: 25536270 ttggagggaacatatcatggataagggtatgtaaggaggtata 25536312



 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 117      ccgacgacggcgatgaccatca 138
                ||||||||||||||||||||||
Sbjct: 10997168 ccgacgacggcgatgaccatca 10997147



 Score = 40.1 bits (20), Expect = 9.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                            
Query: 137      cagatcactacctaaaagatgaatgatc 164
                ||||||||| ||||||||||| ||||||
Sbjct: 25535240 cagatcactccctaaaagatgtatgatc 25535267

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>dbj|AP004367.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0696E01
          Length = 194056

 Score =  103 bits (52), Expect = 7e-19
 Identities = 97/112 (86%)
 Strand = Plus / Plus

                                                                         
Query: 520   ccttggggttgatgataaaaatcttgcctttcgaaattcccatctttttgtatgtaagct 579
             |||| |||||||||||||| || || ||||| | ||||||||||||||||||  ||||||
Sbjct: 64029 ccttcgggttgatgataaagattttcccttttggaattcccatctttttgtaactaagct 64088

                                                                 
Query: 580   catcagtgtctctgttgccaaatccagcataaaatggattgtagtcggaagg 631
              ||| || ||||||||| ||||||||| ||||||||||||||| || |||||
Sbjct: 64089 tatctgtatctctgttgacaaatccagaataaaatggattgtaatcagaagg 64140



 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 65/75 (86%)
 Strand = Plus / Plus

                                                                         
Query: 351   ttgtcaaaactacactacaaatcaacgtctggcagtggcaccttccagtaattccatgag 410
             |||| |||||||||||||| |||||| | |||   ||||| ||||||||||||||| || 
Sbjct: 63062 ttgttaaaactacactacagatcaacatttggagatggcatcttccagtaattccaggaa 63121

                            
Query: 411   ttgtagtcttcctgc 425
             |||||||||||||||
Sbjct: 63122 ttgtagtcttcctgc 63136



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                        
Query: 439   ttggagggaacatgtcattgacaagagtatgcaaggaggtata 481
             ||||||||||||| |||| || ||| ||||| |||||||||||
Sbjct: 63873 ttggagggaacatatcatggataagggtatgtaaggaggtata 63915



 Score = 40.1 bits (20), Expect = 9.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 137   cagatcactacctaaaagatgaatgatc 164
             ||||||||| ||||||||||| ||||||
Sbjct: 62843 cagatcactccctaaaagatgtatgatc 62870

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>ref|NM_202539.1| Arabidopsis thaliana unknown protein AT3G09560 transcript variant
            AT3G09560.2 mRNA, complete cds
          Length = 3465

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 66/77 (85%)
 Strand = Plus / Minus

                                                                        
Query: 393  ttccagtaattccatgagttgtagtcttcctgctcaaccaaagttgttggagggaacatg 452
            |||||| ||||||||| ||| || |||||||||||||| |  |  |||||||| ||||||
Sbjct: 3104 ttccagaaattccatgggttataatcttcctgctcaacaagtgaagttggaggaaacatg 3045

                             
Query: 453  tcattgacaagagtatg 469
            || ||||||||||||||
Sbjct: 3044 tcgttgacaagagtatg 3028

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>ref|NM_111790.3| Arabidopsis thaliana unknown protein AT3G09560 transcript variant
            AT3G09560.1 mRNA, complete cds
          Length = 3511

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 66/77 (85%)
 Strand = Plus / Minus

                                                                        
Query: 393  ttccagtaattccatgagttgtagtcttcctgctcaaccaaagttgttggagggaacatg 452
            |||||| ||||||||| ||| || |||||||||||||| |  |  |||||||| ||||||
Sbjct: 3150 ttccagaaattccatgggttataatcttcctgctcaacaagtgaagttggaggaaacatg 3091

                             
Query: 453  tcattgacaagagtatg 469
            || ||||||||||||||
Sbjct: 3090 tcgttgacaagagtatg 3074

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>emb|BX824069.1|CNS0A7EB Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH1ZD03 of Hormone Treated Callus of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 3442

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 66/77 (85%)
 Strand = Plus / Minus

                                                                        
Query: 393  ttccagtaattccatgagttgtagtcttcctgctcaaccaaagttgttggagggaacatg 452
            |||||| ||||||||| ||| || |||||||||||||| |  |  |||||||| ||||||
Sbjct: 3145 ttccagaaattccatgggttataatcttcctgctcaacaagtgaagttggaggaaacatg 3086

                             
Query: 453  tcattgacaagagtatg 469
            || ||||||||||||||
Sbjct: 3085 tcgttgacaagagtatg 3069

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>gb|AC120885.3| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBa0042J05, complete sequence
          Length = 150295

 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 60/70 (85%)
 Strand = Plus / Minus

                                                                         
Query: 574   taagctcatcagtgtctctgttgccaaatccagcataaaatggattgtagtcggaaggaa 633
             |||||||||| || ||||| || |||||||||||||| ||||||||  |||| | |||||
Sbjct: 70119 taagctcatctgtatctctatttccaaatccagcatagaatggatttgagtcaggaggaa 70060

                       
Query: 634   aaagtgcttt 643
             | ||||||||
Sbjct: 70059 atagtgcttt 70050

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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 60/70 (85%)
 Strand = Plus / Minus

                                                                            
Query: 574      taagctcatcagtgtctctgttgccaaatccagcataaaatggattgtagtcggaaggaa 633
                |||||||||| || ||||| || |||||||||||||| ||||||||  |||| | |||||
Sbjct: 23054116 taagctcatctgtatctctatttccaaatccagcatagaatggatttgagtcaggaggaa 23054057

                          
Query: 634      aaagtgcttt 643
                | ||||||||
Sbjct: 23054056 atagtgcttt 23054047

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>dbj|AK062893.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-108-E06, full
           insert sequence
          Length = 1108

 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 60/70 (85%)
 Strand = Plus / Minus

                                                                       
Query: 574 taagctcatcagtgtctctgttgccaaatccagcataaaatggattgtagtcggaaggaa 633
           |||||||||| || ||||| || |||||||||||||| ||||||||  |||| | |||||
Sbjct: 436 taagctcatctgtatctctatttccaaatccagcatagaatggatttgagtcaggaggaa 377

                     
Query: 634 aaagtgcttt 643
           | ||||||||
Sbjct: 376 atagtgcttt 367



 Score = 40.1 bits (20), Expect = 9.2
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                               
Query: 393 ttccagtaattccatgagttgtagtcttcctgctca 428
           |||||||||||||| |  |||||||| |||||||||
Sbjct: 620 ttccagtaattccaagtattgtagtcctcctgctca 585

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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 60/70 (85%)
 Strand = Plus / Minus

                                                                            
Query: 574      taagctcatcagtgtctctgttgccaaatccagcataaaatggattgtagtcggaaggaa 633
                |||||||||| || ||||| || |||||||||||||| ||||||||  |||| | |||||
Sbjct: 23364026 taagctcatctgtatctctatttccaaatccagcatagaatggatttgagtcaggaggaa 23363967

                          
Query: 634      aaagtgcttt 643
                | ||||||||
Sbjct: 23363966 atagtgcttt 23363957

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>ref|NM_123652.2| Arabidopsis thaliana unknown protein AT5G42870 mRNA, complete cds
          Length = 3049

 Score = 50.1 bits (25), Expect = 0.010
 Identities = 49/57 (85%)
 Strand = Plus / Minus

                                                                     
Query: 578  ctcatcagtgtctctgttgccaaatccagcataaaatggattgtagtcggaaggaaa 634
            |||||| ||||||||||| ||||| |||||||| ||||| ||||  |||| ||||||
Sbjct: 2583 ctcatctgtgtctctgtttccaaaaccagcatagaatgggttgtgttcgggaggaaa 2527

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>dbj|AB008264.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MBD2
          Length = 79976

 Score = 50.1 bits (25), Expect = 0.010
 Identities = 49/57 (85%)
 Strand = Plus / Plus

                                                                      
Query: 578   ctcatcagtgtctctgttgccaaatccagcataaaatggattgtagtcggaaggaaa 634
             |||||| ||||||||||| ||||| |||||||| ||||| ||||  |||| ||||||
Sbjct: 15201 ctcatctgtgtctctgtttccaaaaccagcatagaatgggttgtgttcgggaggaaa 15257

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>gb|AC016661.7|AC016661 Arabidopsis thaliana chromosome 3 BAC F11F8 genomic sequence, complete
             sequence
          Length = 107603

 Score = 48.1 bits (24), Expect = 0.038
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                             
Query: 438   gttggagggaacatgtcattgacaagagtatg 469
             |||||||| |||||||| ||||||||||||||
Sbjct: 33479 gttggaggaaacatgtcgttgacaagagtatg 33510

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>ref|XM_717419.1| Candida albicans SC5314 hypothetical protein (CaO19_1462), mRNA
          Length = 2346

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 580  catcagtgtctctgttgccaaatccagcataaaatgga 617
            ||||||||  ||| || |||||||||||||||||||||
Sbjct: 1414 catcagtgattctattaccaaatccagcataaaatgga 1377

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>ref|XM_717280.1| Candida albicans SC5314 hypothetical protein (CaO19_9037), mRNA
          Length = 2346

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 580  catcagtgtctctgttgccaaatccagcataaaatgga 617
            ||||||||  ||| || |||||||||||||||||||||
Sbjct: 1414 catcagtgattctattaccaaatccagcataaaatgga 1377

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>gb|AC157645.8| Medicago truncatula clone mth2-70l21, complete sequence
          Length = 118562

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 52/62 (83%)
 Strand = Plus / Minus

                                                                         
Query: 579   tcatcagtgtctctgttgccaaatccagcataaaatggattgtagtcggaaggaaaaagt 638
             |||||||||||||| || ||||| |||||||| || |||||  | || | ||||||||||
Sbjct: 19894 tcatcagtgtctctatttccaaaaccagcatagaacggatttgaatcaggaggaaaaagt 19835

               
Query: 639   gc 640
             ||
Sbjct: 19834 gc 19833

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>gb|AC007440.6|AC007440 Drosophila melanogaster, chromosome 2R, region 49A-49B, BAC clone
             BACR37I09, complete sequence
          Length = 184621

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 494   aactgaactattgatggccact 515
             ||||||||||||||||||||||
Sbjct: 56683 aactgaactattgatggccact 56662

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>dbj|AP003578.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0682B08
          Length = 138376

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 117   ccgacgacggcgatgaccatca 138
             ||||||||||||||||||||||
Sbjct: 26050 ccgacgacggcgatgaccatca 26029

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>dbj|AP002883.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0487H02
          Length = 145491

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 117    ccgacgacggcgatgaccatca 138
              ||||||||||||||||||||||
Sbjct: 100010 ccgacgacggcgatgaccatca 99989

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>gb|AE003823.3| Drosophila melanogaster chromosome 2R, section 27 of 73 of the complete
              sequence
          Length = 292919

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 494    aactgaactattgatggccact 515
              ||||||||||||||||||||||
Sbjct: 218033 aactgaactattgatggccact 218012

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>emb|BX004796.6| Mouse DNA sequence from clone RP23-345M13 on chromosome 4, complete
             sequence
          Length = 40707

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 5     acagtataagctactacatgca 26
             ||||||||||||||||||||||
Sbjct: 18477 acagtataagctactacatgca 18456

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>emb|AL935054.11| Mouse DNA sequence from clone RP23-280A12 on chromosome 11 Contains the
              5' end of the gene for a novel protein (C330012F17Rik,
              C130096N06Rik), a ribosomal protein L37a (Rpl37a)
              pseudogene, a pseudogene similar to part of a novel protein
              (D130064H19Rik), a fibrillarin (Fbl) pseudogene, the 5' end
              of the gene for a novel protein (4931428D14Rik)
              (2300003H10) and three CpG islands, complete sequence
          Length = 199018

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 435    gttgttggagggaacatgtca 455
              |||||||||||||||||||||
Sbjct: 177104 gttgttggagggaacatgtca 177084

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>gb|AC021657.19| Homo sapiens 3 BAC RP11-490B19 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 170046

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 261    gacagaattctgctgtggcga 281
              |||||||||||||||||||||
Sbjct: 114010 gacagaattctgctgtggcga 114030

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>gb|AC078843.2|AC078843 Homo sapiens chromosome 7 clone RP11-59F6, complete sequence
          Length = 179416

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 382   gcagtggcaccttccagtaattcca 406
             |||||||| ||||||||||||||||
Sbjct: 45005 gcagtggctccttccagtaattcca 44981

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>gb|AC009530.5|AC009530 Homo sapiens chromosome 7 clone RP11-302L6, complete sequence
          Length = 189653

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 382    gcagtggcaccttccagtaattcca 406
              |||||||| ||||||||||||||||
Sbjct: 160228 gcagtggctccttccagtaattcca 160204

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>ref|XM_640978.1| Dictyostelium discoideum ABC transporter G family protein
            (DDB0191234), partial mRNA
          Length = 4320

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 348  tacttgtcaaaactacacta 367
            ||||||||||||||||||||
Sbjct: 4074 tacttgtcaaaactacacta 4093

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>gb|AC102490.7| Mus musculus chromosome 1, clone RP24-512M8, complete sequence
          Length = 133883

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 531   atgataaaaatcttgccttt 550
             ||||||||||||||||||||
Sbjct: 71416 atgataaaaatcttgccttt 71435

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>gb|AC137004.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0615D12,
             complete sequence
          Length = 155402

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 118   cgacgacggcgatgaccatc 137
             ||||||||||||||||||||
Sbjct: 85643 cgacgacggcgatgaccatc 85662

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>emb|CR719086.2|CNS0GHSK Tetraodon nigroviridis full-length cDNA
          Length = 720

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 640 ctttaatgtcctccagacaggcaa 663
           |||||||||||||||| |||||||
Sbjct: 466 ctttaatgtcctccagccaggcaa 443

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>emb|CR716556.2|CNS0GFUD Tetraodon nigroviridis full-length cDNA
          Length = 964

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 640 ctttaatgtcctccagacaggcaa 663
           |||||||||||||||| |||||||
Sbjct: 473 ctttaatgtcctccagccaggcaa 450

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>emb|CR687269.2|CNS0FT8X Tetraodon nigroviridis full-length cDNA
          Length = 719

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 640 ctttaatgtcctccagacaggcaa 663
           |||||||||||||||| |||||||
Sbjct: 457 ctttaatgtcctccagccaggcaa 434

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>emb|CR675396.2|CNS0FK3U Tetraodon nigroviridis full-length cDNA
          Length = 405

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 640 ctttaatgtcctccagacaggcaa 663
           |||||||||||||||| |||||||
Sbjct: 148 ctttaatgtcctccagccaggcaa 125

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>emb|CR672529.2|CNS0FHW7 Tetraodon nigroviridis full-length cDNA
          Length = 919

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 640 ctttaatgtcctccagacaggcaa 663
           |||||||||||||||| |||||||
Sbjct: 464 ctttaatgtcctccagccaggcaa 441

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>emb|CR642450.2|CNS0EUOO Tetraodon nigroviridis full-length cDNA
          Length = 899

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 640 ctttaatgtcctccagacaggcaa 663
           |||||||||||||||| |||||||
Sbjct: 446 ctttaatgtcctccagccaggcaa 423

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>emb|CR641663.2|CNS0EU2T Tetraodon nigroviridis full-length cDNA
          Length = 721

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 640 ctttaatgtcctccagacaggcaa 663
           |||||||||||||||| |||||||
Sbjct: 465 ctttaatgtcctccagccaggcaa 442

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>gb|CP000053.1| Rickettsia felis URRWXCal2, complete genome
          Length = 1485148

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 257    gttggacagaattctgctgt 276
              ||||||||||||||||||||
Sbjct: 112282 gttggacagaattctgctgt 112301

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>ref|XM_503343.1| Yarrowia lipolytica CLIB122, YALI0D27016g predicted mRNA
          Length = 2172

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 593  gttgccaaatccagcataaaatggattg 620
            ||||||||||||||| || |||||||||
Sbjct: 1419 gttgccaaatccagcgtagaatggattg 1392

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>gb|AC114806.5| Homo sapiens BAC clone RP11-1251F13 from 4, complete sequence
          Length = 138121

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 67    gcagctgctgataacagatt 86
             ||||||||||||||||||||
Sbjct: 50146 gcagctgctgataacagatt 50127

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>gb|AC079264.23| Homo sapiens Xp BAC RP11-315B16 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 194851

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 343  tgctgtacttgtcaaaacta 362
            ||||||||||||||||||||
Sbjct: 3726 tgctgtacttgtcaaaacta 3745

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>gb|AF482392.1| Dictyostelium discoideum ABC transporter AbcG14 (abcG14) gene,
            complete cds
          Length = 6664

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 348  tacttgtcaaaactacacta 367
            ||||||||||||||||||||
Sbjct: 5620 tacttgtcaaaactacacta 5639

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>gb|AF037042.2|AF037042 Dictyostelium discoideum ras-related GTPase RacF1 (racF1) gene,
           complete cds; tRNA-Glu gene, complete sequence; and
           unknown genes
          Length = 5057

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 348 tacttgtcaaaactacacta 367
           ||||||||||||||||||||
Sbjct: 931 tacttgtcaaaactacacta 950

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>gb|AC154843.2| Mus musculus BAC clone RP23-58N15 from chromosome 14, complete sequence
          Length = 199716

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 633   aaaagtgctttaatgtcctccaga 656
             |||||||||||||||||| |||||
Sbjct: 42489 aaaagtgctttaatgtcccccaga 42466

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>gb|AC087901.20| Mus musculus strain C57BL/6J chromosome 17 clone rp23-22l23, complete
             sequence
          Length = 214372

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 383   cagtggcaccttccagtaattcca 406
             |||||||||||||| |||||||||
Sbjct: 43599 cagtggcaccttcctgtaattcca 43576

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>emb|CR382130.1| Yarrowia lipolytica chromosome D of strain CLIB122 of Yarrowia lipolytica
          Length = 3633272

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 593     gttgccaaatccagcataaaatggattg 620
               ||||||||||||||| || |||||||||
Sbjct: 3596428 gttgccaaatccagcgtagaatggattg 3596401

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>emb|AL672278.12| Mouse DNA sequence from clone RP23-465H23 on chromosome 16, complete
              sequence
          Length = 187418

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 507    atggccacttcacccttggg 526
              ||||||||||||||||||||
Sbjct: 109598 atggccacttcacccttggg 109617


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,696,835
Number of Sequences: 3902068
Number of extensions: 5696835
Number of successful extensions: 102201
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 101812
Number of HSP's gapped (non-prelim): 386
length of query: 676
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 653
effective length of database: 17,143,297,704
effective search space: 11194573400712
effective search space used: 11194573400712
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result