ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags10j18
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1IL17_BOVIN (Q687Y7) Interleukin-17A precursor (IL-17A) (IL-17) 30 1.7
2TERT_MOUSE (O70372) Telomerase reverse transcriptase (EC 2.7.7.4... 29 3.7
3VRAA_STAAR (Q6GJ94) Putative long chain fatty acid CoA ligase vr... 28 8.3
4NCAM2_MOUSE (O35136) Neural cell adhesion molecule 2 precursor (... 28 8.3
5UQCR2_EUGGR (P43265) Ubiquinol-cytochrome-c reductase complex co... 28 8.3

>IL17_BOVIN (Q687Y7) Interleukin-17A precursor (IL-17A) (IL-17)|
          Length = 153

 Score = 30.4 bits (67), Expect = 1.7
 Identities = 19/55 (34%), Positives = 24/55 (43%)
 Frame = -1

Query: 374 SANTREPLPLHINLVSTSSWTVHRPLAPKRS*LVYWSNCFLITLLI*ICEHTGIV 210
           S N+R P   H    STS WT+HR   P+R   V W            C H+G +
Sbjct: 55  STNSRRPTDYHKR--STSPWTLHRNEDPERYPSVIWEA---------KCSHSGCI 98



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>TERT_MOUSE (O70372) Telomerase reverse transcriptase (EC 2.7.7.49) (Telomerase|
           catalytic subunit)
          Length = 1122

 Score = 29.3 bits (64), Expect = 3.7
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +1

Query: 52  YDLDNCIDTEHCLYSESSKQKKYNSSFIPQNVKRN 156
           + L   I+T H LYS    Q++ N SF+  N++ N
Sbjct: 324 FQLRPFIETRHFLYSRGDGQERLNPSFLLSNLQPN 358



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>VRAA_STAAR (Q6GJ94) Putative long chain fatty acid CoA ligase vraA (EC|
           6.2.1.-) (Acyl-CoA synthetase)
          Length = 458

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
 Frame = +1

Query: 73  DTEHCLYSE-SSKQKKYNSSFIPQNVKRNKLNLTHH*GMISLSYISVTIPVCSQI*INRV 249
           + EH + S  SS  K Y+S F     + N +NL    G    S+IS  +   + +    V
Sbjct: 234 NNEHTIQSFFSSGDKLYSSIFKKIKNQANDINLIEFFGTSETSFISYNLNQQAPVESVGV 293

Query: 250 IKKQLD-QYTNHDLFGANGLWTVHDEVETRLMWSG 351
           +   ++ + TNHD    NG+ T+   V++ +M+SG
Sbjct: 294 LFPNVELKTTNHD---HNGIGTIC--VKSNMMFSG 323



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>NCAM2_MOUSE (O35136) Neural cell adhesion molecule 2 precursor (N-CAM 2) (RB-8|
           neural cell adhesion molecule) (R4B12)
          Length = 837

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -2

Query: 403 ETICIRNTSPAPIQGNLYHSTSISSLP 323
           E +C  ++SPAP    LYH+  ++++P
Sbjct: 133 EVVCRVSSSPAPAVSWLYHNEEVTTIP 159



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>UQCR2_EUGGR (P43265) Ubiquinol-cytochrome-c reductase complex core protein 2,|
           mitochondrial precursor (EC 1.10.2.2)
          Length = 474

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 147 EKEQTKSDSPLGYDQSIIHISHYSG 221
           E ++TK DSP  Y Q I+H + + G
Sbjct: 181 ESKETKRDSPFAYLQDILHKTAFKG 205


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,963,837
Number of Sequences: 219361
Number of extensions: 1088693
Number of successful extensions: 2523
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2523
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2169600302
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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