ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags10j16
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AJ000231.1|HVJ000231 Hordeum vulgare mRNA for expressed sequ... 68 4e-08
2gb|AF321858.1|AF321858 Lolium rigidum clone BXH putative cytochr... 58 4e-05
3dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
4dbj|AP003523.3| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
5ref|XM_479696.1| Oryza sativa (japonica cultivar-group), mRNA 50 0.009
6dbj|AB124853.1| Triticum aestivum CYP71C7v3 mRNA for P450, compl... 50 0.009
7dbj|AB124852.1| Triticum aestivum CYP71C7v1 mRNA for P450, compl... 50 0.009
8dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.009
9gb|AF123602.1| Triticum aestivum clone CYP71C2-21TA cytochrome P... 50 0.009
10dbj|AP003571.4| Oryza sativa (japonica cultivar-group) genomic D... 50 0.009
11dbj|AP004462.3| Oryza sativa (japonica cultivar-group) genomic D... 50 0.009
12dbj|AP003909.3| Oryza sativa (japonica cultivar-group) genomic D... 50 0.009
13dbj|AB042628.1| Triticum aestivum CYP71C7v2 mRNA for P450, compl... 50 0.009
14ref|XM_464369.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.036
15dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.036
16dbj|AP004000.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.036
17dbj|AP003990.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.036
18dbj|AK068907.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.036
19emb|Y11404.1|ZMCI31AC2 Z.mays cyp71c2 gene 46 0.14
20emb|X81829.1|ZMCYP71C2 Z.mays CYP71C2 mRNA for cytochrome P-450 46 0.14
21gb|AY109508.1| Zea mays CL1574_1 mRNA sequence 46 0.14
22ref|NM_115157.2| Arabidopsis thaliana CYP76G1; heme binding / ir... 44 0.56
23emb|AL132969.2|ATF8J2 Arabidopsis thaliana DNA chromosome 3, BAC... 44 0.56
24gb|AF090447.2| Zea mays 22 kDa alpha zein gene cluster, complete... 44 0.56
25dbj|AK118051.1| Arabidopsis thaliana At3g52970 mRNA for putative... 44 0.56
26dbj|AB042629.1| Triticum aestivum CYP71C8v2 mRNA for P450, compl... 44 0.56
27ref|XM_723533.1| Plasmodium yoelii yoelii str. 17XNL hypothetica... 42 2.2
28emb|BX546474.8| Zebrafish DNA sequence from clone DKEY-120L3 in ... 42 2.2
29emb|CT027663.2| Medicago truncatula chromosome 5 clone mth2-139g... 42 2.2
30ref|XM_464659.1| Oryza sativa (japonica cultivar-group), mRNA 40 8.8
31ref|XM_464368.1| Oryza sativa (japonica cultivar-group), mRNA 40 8.8
32ref|XM_464364.1| Oryza sativa (japonica cultivar-group), mRNA 40 8.8
33gb|AC118472.8| Mus musculus chromosome 19, clone RP23-187N14, co... 40 8.8
34gb|AC007587.12| Drosophila melanogaster clone BACR02D22, complet... 40 8.8
35gb|AC116963.2| Dictyostelium discoideum chromosome 2 map 4657875... 40 8.8
36gb|AC107850.11| Mus musculus chromosome 17, clone RP23-450G2, co... 40 8.8
37emb|CR956632.4| Pig DNA sequence from clone CH242-197B5 on chrom... 40 8.8
38gb|AC099615.6| Mus musculus chromosome 1, clone RP23-412G3, comp... 40 8.8
39emb|AL160033.21| Human DNA sequence from clone RP11-480K16 on ch... 40 8.8
40emb|AL645938.9| Mouse DNA sequence from clone RP23-15E24 on chro... 40 8.8
41emb|AL645664.8| Mouse DNA sequence from clone RP23-417P22 on chr... 40 8.8
42gb|AC069431.13| Homo sapiens 3 BAC RP11-225N10 (Roswell Park Can... 40 8.8
43gb|AC068037.5| Homo sapiens BAC clone RP11-757K22 from 4, comple... 40 8.8
44gb|DQ054581.1| Nicotiana benthamiana NRG2 pseudogene mRNA, compl... 40 8.8
45gb|DQ054580.1| Nicotiana benthamiana NRG1 and truncated NRG1 (NR... 40 8.8
46gb|AC011996.8| Homo sapiens BAC clone RP11-250H22 from 2, comple... 40 8.8
47gb|AC019254.12| Homo sapiens chromosome 15, clone RP11-424I19, c... 40 8.8
48gb|AC009960.10| Homo sapiens BAC clone RP11-354N12 from 2, compl... 40 8.8
49dbj|AP005846.2| Oryza sativa (japonica cultivar-group) genomic D... 40 8.8
50dbj|AB125684.1| Erythroplusia pyropia mitochondrial cytb gene fo... 40 8.8
51dbj|AK107104.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 8.8
52dbj|AK107034.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 8.8
53dbj|AK100832.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 8.8
54emb|CR383662.9| Zebrafish DNA sequence from clone DKEY-207J16 in... 40 8.8
55emb|AL929182.4| Zebrafish DNA sequence from clone CH211-195E3 in... 40 8.8
56gb|AE003787.5| Drosophila melanogaster chromosome 2R, section 2 ... 40 8.8
57emb|AL355103.3|CNS05TCM Human chromosome 14 DNA sequence BAC R-6... 40 8.8
58dbj|AP004241.2| Homo sapiens genomic DNA, chromosome 11q clone:R... 40 8.8
59emb|CT025668.10| Mouse DNA sequence from clone RP24-370M11 on ch... 40 8.8
60emb|AL928610.8| Zebrafish DNA sequence from clone CH211-245P6, c... 40 8.8
61emb|AL808106.7| Mouse DNA sequence from clone RP23-281P6 on chro... 40 8.8 
>emb|AJ000231.1|HVJ000231 Hordeum vulgare mRNA for expressed sequence tag
          Length = 160

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 46/50 (92%)
 Strand = Plus / Minus

                                                             
Query: 92  agtttctccttccgacgcatggttagcccaaacacctctgccatatcaat 141
           ||||||||||||| ||| ||||||| |||||||||||||| |||||||||
Sbjct: 122 agtttctccttcctacgaatggttatcccaaacacctctgtcatatcaat 73



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 225 cgaggtttataccagggcacatccttcgtcc 255
           ||||||| |||||||||||||||||| ||||
Sbjct: 31  cgaggttcataccagggcacatcctttgtcc 1
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>gb|AF321858.1|AF321858 Lolium rigidum clone BXH putative cytochrome P450 mRNA, complete cds
          Length = 1865

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                     
Query: 229  gtttataccagggcacatccttcgtcctgccccgaacggca 269
            ||||||||| ||||||||||||||||| | |||||||||||
Sbjct: 1410 gtttatacctgggcacatccttcgtccagacccgaacggca 1370
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 50/58 (86%)
 Strand = Plus / Plus

                                                                          
Query: 239      gggcacatccttcgtcctgccccgaacggcaagaactgaaagtcattccccttgaagt 296
                ||||||||||| || || ||||||||||||| |||||  |||||  ||||||||||||
Sbjct: 25776358 gggcacatcctccggccggccccgaacggcacgaactcgaagtccgtccccttgaagt 25776415



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                             
Query: 236      ccagggcacatccttcgtcctgccccgaa 264
                ||||||||||| |||||||||||||||||
Sbjct: 25721769 ccagggcacattcttcgtcctgccccgaa 25721797
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>dbj|AP003523.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0416A11
          Length = 171519

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 50/58 (86%)
 Strand = Plus / Plus

                                                                       
Query: 239   gggcacatccttcgtcctgccccgaacggcaagaactgaaagtcattccccttgaagt 296
             ||||||||||| || || ||||||||||||| |||||  |||||  ||||||||||||
Sbjct: 58562 gggcacatcctccggccggccccgaacggcacgaactcgaagtccgtccccttgaagt 58619



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                         
Query: 236  ccagggcacatccttcgtcctgccccgaa 264
            ||||||||||| |||||||||||||||||
Sbjct: 3973 ccagggcacattcttcgtcctgccccgaa 4001
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>ref|XM_479696.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1575

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 52/61 (85%)
 Strand = Plus / Minus

                                                                        
Query: 236  ccagggcacatccttcgtcctgccccgaacggcaagaactgaaagtcattccccttgaag 295
            ||||||||||| ||||||||||  || || ||||||||||| ||||| | |||||| |||
Sbjct: 1400 ccagggcacattcttcgtcctgatccaaatggcaagaactggaagtcttgccccttaaag 1341

             
Query: 296  t 296
            |
Sbjct: 1340 t 1340
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>dbj|AB124853.1| Triticum aestivum CYP71C7v3 mRNA for P450, complete cds
          Length = 1708

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                 
Query: 170  tcccaatcaaaatggtatatgagattcgccaacataa 206
            ||||||||||||||||| |||||||| || |||||||
Sbjct: 1498 tcccaatcaaaatggtacatgagatttgctaacataa 1462
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>dbj|AB124852.1| Triticum aestivum CYP71C7v1 mRNA for P450, complete cds
          Length = 1694

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                 
Query: 170  tcccaatcaaaatggtatatgagattcgccaacataa 206
            ||||||||||||||||| |||||||| || |||||||
Sbjct: 1507 tcccaatcaaaatggtacatgagatttgctaacataa 1471
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8,
              complete sequence
          Length = 28434780

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 52/61 (85%)
 Strand = Plus / Minus

                                                                          
Query: 236    ccagggcacatccttcgtcctgccccgaacggcaagaactgaaagtcattccccttgaag 295
              ||||||||||| ||||||||||  || || ||||||||||| ||||| | |||||| |||
Sbjct: 314490 ccagggcacattcttcgtcctgatccaaatggcaagaactggaagtcttgccccttaaag 314431

               
Query: 296    t 296
              |
Sbjct: 314430 t 314430
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>gb|AF123602.1| Triticum aestivum clone CYP71C2-21TA cytochrome P450 mRNA, complete
            cds
          Length = 1721

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                 
Query: 170  tcccaatcaaaatggtatatgagattcgccaacataa 206
            ||||||||||||||||| |||||||| || |||||||
Sbjct: 1526 tcccaatcaaaatggtacatgagatttgctaacataa 1490
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>dbj|AP003571.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0458E02
          Length = 154458

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                           
Query: 236    ccagggcacatccttcgtcctgccccgaa 264
              ||||||||||| |||||||||||||||||
Sbjct: 145214 ccagggcacattcttcgtcctgccccgaa 145242
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>dbj|AP004462.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0450B04
          Length = 153268

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 52/61 (85%)
 Strand = Plus / Minus

                                                                         
Query: 236   ccagggcacatccttcgtcctgccccgaacggcaagaactgaaagtcattccccttgaag 295
             ||||||||||| ||||||||||  || || ||||||||||| ||||| | |||||| |||
Sbjct: 24004 ccagggcacattcttcgtcctgatccaaatggcaagaactggaagtcttgccccttaaag 23945

              
Query: 296   t 296
             |
Sbjct: 23944 t 23944
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>dbj|AP003909.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1300_E01
          Length = 103022

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 52/61 (85%)
 Strand = Plus / Minus

                                                                         
Query: 236   ccagggcacatccttcgtcctgccccgaacggcaagaactgaaagtcattccccttgaag 295
             ||||||||||| ||||||||||  || || ||||||||||| ||||| | |||||| |||
Sbjct: 80916 ccagggcacattcttcgtcctgatccaaatggcaagaactggaagtcttgccccttaaag 80857

              
Query: 296   t 296
             |
Sbjct: 80856 t 80856
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>dbj|AB042628.1| Triticum aestivum CYP71C7v2 mRNA for P450, complete cds
          Length = 1741

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                 
Query: 170  tcccaatcaaaatggtatatgagattcgccaacataa 206
            ||||||||||||||||| |||||||| || |||||||
Sbjct: 1515 tcccaatcaaaatggtacatgagatttgctaacataa 1479
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>ref|XM_464369.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1791

 Score = 48.1 bits (24), Expect = 0.036
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                    
Query: 235  accagggcacatccttcgtcctgc 258
            ||||||||||||||||||||||||
Sbjct: 1436 accagggcacatccttcgtcctgc 1413
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 48.1 bits (24), Expect = 0.036
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                       
Query: 235     accagggcacatccttcgtcctgc 258
               ||||||||||||||||||||||||
Sbjct: 4766829 accagggcacatccttcgtcctgc 4766806



 Score = 40.1 bits (20), Expect = 8.8
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                   
Query: 236     ccagggcacatccttcgtcctgccccgaacggcaag 271
               |||||||||||||||| |||||| || || ||||||
Sbjct: 6560929 ccagggcacatccttcttcctgcaccaaaaggcaag 6560894



 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 235     accagggcacatccttcgtcctgc 258
               |||||||||||||||||| |||||
Sbjct: 4770838 accagggcacatccttcgccctgc 4770815



 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 236     ccagggcacatccttcgtcc 255
               ||||||||||||||||||||
Sbjct: 4755982 ccagggcacatccttcgtcc 4755963



 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 233     ataccagggcacatccttcg 252
               ||||||||||||||||||||
Sbjct: 4742822 ataccagggcacatccttcg 4742803
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>dbj|AP004000.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1115_B01
          Length = 129329

 Score = 48.1 bits (24), Expect = 0.036
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 235   accagggcacatccttcgtcctgc 258
             ||||||||||||||||||||||||
Sbjct: 47419 accagggcacatccttcgtcctgc 47396



 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 235   accagggcacatccttcgtcctgc 258
             |||||||||||||||||| |||||
Sbjct: 51428 accagggcacatccttcgccctgc 51405



 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 236   ccagggcacatccttcgtcc 255
             ||||||||||||||||||||
Sbjct: 36572 ccagggcacatccttcgtcc 36553



 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 233   ataccagggcacatccttcg 252
             ||||||||||||||||||||
Sbjct: 23412 ataccagggcacatccttcg 23393
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>dbj|AP003990.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
            clone:OJ1073_F05
          Length = 124252

 Score = 48.1 bits (24), Expect = 0.036
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                    
Query: 235  accagggcacatccttcgtcctgc 258
            ||||||||||||||||||||||||
Sbjct: 8988 accagggcacatccttcgtcctgc 8965



 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 235   accagggcacatccttcgtcctgc 258
             |||||||||||||||||| |||||
Sbjct: 12997 accagggcacatccttcgccctgc 12974
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>dbj|AK068907.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023002L07, full
            insert sequence
          Length = 1791

 Score = 48.1 bits (24), Expect = 0.036
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                    
Query: 235  accagggcacatccttcgtcctgc 258
            ||||||||||||||||||||||||
Sbjct: 1436 accagggcacatccttcgtcctgc 1413
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>emb|Y11404.1|ZMCI31AC2 Z.mays cyp71c2 gene
          Length = 3130

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                           
Query: 170  tcccaatcaaaatggtatatgagattcgcca 200
            ||||||||||||||||| |||||||| ||||
Sbjct: 2182 tcccaatcaaaatggtacatgagattggcca 2152
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>emb|X81829.1|ZMCYP71C2 Z.mays CYP71C2 mRNA for cytochrome P-450
          Length = 1786

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                           
Query: 170  tcccaatcaaaatggtatatgagattcgcca 200
            ||||||||||||||||| |||||||| ||||
Sbjct: 1606 tcccaatcaaaatggtacatgagattggcca 1576
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>gb|AY109508.1| Zea mays CL1574_1 mRNA sequence
          Length = 1980

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                           
Query: 170  tcccaatcaaaatggtatatgagattcgcca 200
            ||||||||||||||||| |||||||| ||||
Sbjct: 1606 tcccaatcaaaatggtacatgagattggcca 1576
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>ref|NM_115157.2| Arabidopsis thaliana CYP76G1; heme binding / iron ion binding /
            monooxygenase/ oxygen binding AT3G52970 (CYP76G1) mRNA,
            complete cds
          Length = 1662

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                              
Query: 242  cacatccttcgtcctgccccgaacggcaagaact 275
            ||||||||||| || | |||||||||||||||||
Sbjct: 1384 cacatccttcgacccgacccgaacggcaagaact 1351
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>emb|AL132969.2|ATF8J2 Arabidopsis thaliana DNA chromosome 3, BAC clone F8J2
          Length = 99814

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                               
Query: 242   cacatccttcgtcctgccccgaacggcaagaact 275
             ||||||||||| || | |||||||||||||||||
Sbjct: 64964 cacatccttcgacccgacccgaacggcaagaact 64997
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>gb|AF090447.2| Zea mays 22 kDa alpha zein gene cluster, complete sequence
          Length = 346296

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                                
Query: 236    ccagggcacatccttcgtcctgccccgaacggca 269
              ||||||||||||||| | ||| ||||||||||||
Sbjct: 295482 ccagggcacatccttggccctcccccgaacggca 295449
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>dbj|AK118051.1| Arabidopsis thaliana At3g52970 mRNA for putative cytochrome P450,
            complete cds, clone: RAFL19-29-L10
          Length = 1690

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                              
Query: 242  cacatccttcgtcctgccccgaacggcaagaact 275
            ||||||||||| || | |||||||||||||||||
Sbjct: 1412 cacatccttcgacccgacccgaacggcaagaact 1379
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>dbj|AB042629.1| Triticum aestivum CYP71C8v2 mRNA for P450, complete cds
          Length = 2113

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 170  tcccaatcaaaatggtatatgagatt 195
            ||||||||||||||||| ||||||||
Sbjct: 1739 tcccaatcaaaatggtacatgagatt 1714
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>ref|XM_723533.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY01086)
            partial mRNA
          Length = 3105

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 38   tttagattctattttatttct 58
            |||||||||||||||||||||
Sbjct: 3096 tttagattctattttatttct 3076
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>emb|BX546474.8| Zebrafish DNA sequence from clone DKEY-120L3 in linkage group 17,
              complete sequence
          Length = 179463

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 37     atttagattctattttatttc 57
              |||||||||||||||||||||
Sbjct: 134578 atttagattctattttatttc 134558
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>emb|CT027663.2| Medicago truncatula chromosome 5 clone mth2-139g23, COMPLETE SEQUENCE
          Length = 133229

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 374   ctaccaatggcccatacattaacga 398
             |||||||| ||||||||||||||||
Sbjct: 98985 ctaccaatagcccatacattaacga 99009
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>ref|XM_464659.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1762

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                
Query: 236  ccagggcacatccttcgtcctgccccgaacggcaag 271
            |||||||||||||||| |||||| || || ||||||
Sbjct: 1403 ccagggcacatccttcttcctgcaccaaaaggcaag 1368
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>ref|XM_464368.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1674

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 236  ccagggcacatccttcgtcc 255
            ||||||||||||||||||||
Sbjct: 1361 ccagggcacatccttcgtcc 1342
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>ref|XM_464364.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1653

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 233  ataccagggcacatccttcg 252
            ||||||||||||||||||||
Sbjct: 1365 ataccagggcacatccttcg 1346
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>gb|AC118472.8| Mus musculus chromosome 19, clone RP23-187N14, complete sequence
          Length = 222869

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 320   tctatgaatctttctggtat 339
             ||||||||||||||||||||
Sbjct: 97727 tctatgaatctttctggtat 97746
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>gb|AC007587.12| Drosophila melanogaster clone BACR02D22, complete sequence
          Length = 185915

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 538   cggtttcaatgacggtttcttgtc 561
             |||||||||||||||||| |||||
Sbjct: 80274 cggtttcaatgacggtttattgtc 80251
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>gb|AC116963.2| Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4,
              complete sequence
          Length = 257109

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 37     atttagattctattttattt 56
              ||||||||||||||||||||
Sbjct: 153441 atttagattctattttattt 153460
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>gb|AC107850.11| Mus musculus chromosome 17, clone RP23-450G2, complete sequence
          Length = 216615

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 4      ctatttatttattagcacaa 23
              ||||||||||||||||||||
Sbjct: 120413 ctatttatttattagcacaa 120394
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>emb|CR956632.4| Pig DNA sequence from clone CH242-197B5 on chromosome 7, complete
              sequence
          Length = 186089

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 449    atggcaaggtgtggaggaag 468
              ||||||||||||||||||||
Sbjct: 134732 atggcaaggtgtggaggaag 134751
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>gb|AC099615.6| Mus musculus chromosome 1, clone RP23-412G3, complete sequence
          Length = 204191

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 38     tttagattctattttatttc 57
              ||||||||||||||||||||
Sbjct: 119556 tttagattctattttatttc 119537
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>emb|AL160033.21| Human DNA sequence from clone RP11-480K16 on chromosome 13 Contains the
             5' end of a novel gene, a novel gene, the 3' end of the
             TUBGCP3 gene for tubulin gamma complex associated protein
             3 and two CpG islands, complete sequence
          Length = 182362

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 47    tattttatttcttgtggcta 66
             ||||||||||||||||||||
Sbjct: 38275 tattttatttcttgtggcta 38294
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>emb|AL645938.9| Mouse DNA sequence from clone RP23-15E24 on chromosome 1 Contains the 5'
              end of a novel gene, complete sequence
          Length = 138851

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 38     tttagattctattttatttc 57
              ||||||||||||||||||||
Sbjct: 110841 tttagattctattttatttc 110860
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>emb|AL645664.8| Mouse DNA sequence from clone RP23-417P22 on chromosome 13 Contains the
              5' end of the Gmds gene for GDP-mannose 4, 6-dehydratase,
              the 3' end of a novel gene and a CpG island, complete
              sequence
          Length = 193914

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 327    atctttctggtatgtactcttctg 350
              ||||||||||||||| ||||||||
Sbjct: 179787 atctttctggtatgttctcttctg 179764
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>gb|AC069431.13| Homo sapiens 3 BAC RP11-225N10 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 123742

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 36    tatttagattctattttatttctt 59
             |||||| |||||||||||||||||
Sbjct: 42077 tatttatattctattttatttctt 42100
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>gb|AC068037.5| Homo sapiens BAC clone RP11-757K22 from 4, complete sequence
          Length = 206136

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 450    tggcaaggtgtggaggaagg 469
              ||||||||||||||||||||
Sbjct: 146232 tggcaaggtgtggaggaagg 146213
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>gb|DQ054581.1| Nicotiana benthamiana NRG2 pseudogene mRNA, complete sequence
          Length = 3355

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 276  gaaagtcattccccttgaagttga 299
            |||||||||||||||||| |||||
Sbjct: 1856 gaaagtcattccccttgatgttga 1833
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>gb|DQ054580.1| Nicotiana benthamiana NRG1 and truncated NRG1 (NRG1) gene, complete
            cds
          Length = 5238

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 276  gaaagtcattccccttgaagttga 299
            |||||||||||||||||| |||||
Sbjct: 3961 gaaagtcattccccttgatgttga 3938
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>gb|AC011996.8| Homo sapiens BAC clone RP11-250H22 from 2, complete sequence
          Length = 167826

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 28    acacaaaatatttagattct 47
             ||||||||||||||||||||
Sbjct: 91572 acacaaaatatttagattct 91591
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>gb|AC019254.12| Homo sapiens chromosome 15, clone RP11-424I19, complete sequence
          Length = 179030

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 397    gaggatgtgcgttccagcaggaac 420
              |||||||||| |||||||||||||
Sbjct: 119435 gaggatgtgccttccagcaggaac 119412
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>gb|AC009960.10| Homo sapiens BAC clone RP11-354N12 from 2, complete sequence
          Length = 207983

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 450    tggcaaggtgtggaggaagg 469
              ||||||||||||||||||||
Sbjct: 109523 tggcaaggtgtggaggaagg 109542
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>dbj|AP005846.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:B1307A11
          Length = 131538

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                  
Query: 236    ccagggcacatccttcgtcctgccccgaacggcaag 271
              |||||||||||||||| |||||| || || ||||||
Sbjct: 121542 ccagggcacatccttcttcctgcaccaaaaggcaag 121507
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>dbj|AB125684.1| Erythroplusia pyropia mitochondrial cytb gene for cytochrome b,
           partial cds
          Length = 680

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 33  aaatatttagattctattttattt 56
           ||||||| ||||||||||||||||
Sbjct: 655 aaatattgagattctattttattt 678
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>dbj|AK107104.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-122-A09, full
            insert sequence
          Length = 1762

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                
Query: 236  ccagggcacatccttcgtcctgccccgaacggcaag 271
            |||||||||||||||| |||||| || || ||||||
Sbjct: 1403 ccagggcacatccttcttcctgcaccaaaaggcaag 1368
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>dbj|AK107034.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-121-B07, full
            insert sequence
          Length = 1674

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 236  ccagggcacatccttcgtcc 255
            ||||||||||||||||||||
Sbjct: 1361 ccagggcacatccttcgtcc 1342
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>dbj|AK100832.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023123D13, full
            insert sequence
          Length = 1654

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 233  ataccagggcacatccttcg 252
            ||||||||||||||||||||
Sbjct: 1366 ataccagggcacatccttcg 1347
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>emb|CR383662.9| Zebrafish DNA sequence from clone DKEY-207J16 in linkage group 4,
             complete sequence
          Length = 174773

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 5     tatttatttattagcacaat 24
             ||||||||||||||||||||
Sbjct: 15125 tatttatttattagcacaat 15144
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>emb|AL929182.4| Zebrafish DNA sequence from clone CH211-195E3 in linkage group 20,
              complete sequence
          Length = 225515

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 15     ttagcacaatataacacaaa 34
              ||||||||||||||||||||
Sbjct: 186260 ttagcacaatataacacaaa 186241
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>gb|AE003787.5| Drosophila melanogaster chromosome 2R, section 2 of 73 of the complete
              sequence
          Length = 294609

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 538    cggtttcaatgacggtttcttgtc 561
              |||||||||||||||||| |||||
Sbjct: 239826 cggtttcaatgacggtttattgtc 239849
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>emb|AL355103.3|CNS05TCM Human chromosome 14 DNA sequence BAC R-624J12 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 173389

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 609   gatggcctcctcatgagctc 628
             ||||||||||||||||||||
Sbjct: 97902 gatggcctcctcatgagctc 97883
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>dbj|AP004241.2| Homo sapiens genomic DNA, chromosome 11q clone:RP11-222B11, complete
              sequence
          Length = 152771

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 25     ataacacaaaatatttagat 44
              ||||||||||||||||||||
Sbjct: 104501 ataacacaaaatatttagat 104520
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>emb|CT025668.10| Mouse DNA sequence from clone RP24-370M11 on chromosome 17, complete
              sequence
          Length = 230212

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 4      ctatttatttattagcacaa 23
              ||||||||||||||||||||
Sbjct: 107304 ctatttatttattagcacaa 107285
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>emb|AL928610.8| Zebrafish DNA sequence from clone CH211-245P6, complete sequence
          Length = 82988

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 8     ttatttattagcacaatata 27
             ||||||||||||||||||||
Sbjct: 77433 ttatttattagcacaatata 77452
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>emb|AL808106.7| Mouse DNA sequence from clone RP23-281P6 on chromosome 2, complete
              sequence
          Length = 201419

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 12     ttattagcacaatataacac 31
              ||||||||||||||||||||
Sbjct: 141005 ttattagcacaatataacac 141024


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,846,516
Number of Sequences: 3902068
Number of extensions: 6846516
Number of successful extensions: 113349
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 113071
Number of HSP's gapped (non-prelim): 278
length of query: 644
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 621
effective length of database: 17,143,297,704
effective search space: 10645987874184
effective search space used: 10645987874184
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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