| Clone Name | rbags10j07 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_187581.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1629 Score = 343 bits (173), Expect = 4e-91 Identities = 274/308 (88%) Strand = Plus / Minus Query: 322 gattcagttttccacacaatgtcttttagttctgatgagaaattctggtagaaactgtga 381 ||||||| ||||||||| |||||||||| ||||| |||||||| | ||||||| ||||| Sbjct: 1343 gattcagatttccacactatgtcttttaactctgacgagaaattgttgtagaaattgtga 1284 Query: 382 aactccaaggtgtctcctccagttttacgaagttcaaccatatggagtgatggagcaacc 441 ||||||| ||||| ||||||||||||||||| |||||||| |||||||||||||||||| Sbjct: 1283 aactccagcgtgtcccctccagttttacgaagctcaaccatgtggagtgatggagcaacc 1224 Query: 442 tcaaaaacctccgttgctacagataaatgaccttttcttcctgtcttgtcacctttcagt 501 || ||||||||||||||||||||||||| ||||||||||| ||||| |||||||| | Sbjct: 1223 tcgaaaacctccgttgctacagataaatagccttttcttccagtcttatcaccttttaac 1164 Query: 502 ttcatcttataattttgtttccgcacattgaaaccaanagggccacaggcttcctctatt 561 ||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||| Sbjct: 1163 ttcatcttataattttgtttccgcacattgaaaccaagaggtccacaagcttcctctatt 1104 Query: 562 ttagacatgatctcttgtggtgtgcgttgtgacgcaaaggatgtttcccgctttaccatc 621 |||||||||||||| |||||||| | ||| || | ||||| ||||||||||| ||||| Sbjct: 1103 ttagacatgatctcctgtggtgtacattgagatgtgaaggaagtttcccgcttcaccatt 1044 Query: 622 cccatcat 629 |||||||| Sbjct: 1043 cccatcat 1036
>gb|BT018583.1| Zea mays clone EL01N0446D08.d mRNA sequence Length = 1868 Score = 311 bits (157), Expect = 2e-81 Identities = 270/308 (87%) Strand = Plus / Minus Query: 322 gattcagttttccacacaatgtcttttagttctgatgagaaattctggtagaaactgtga 381 ||||||| ||||||||| || ||||| || |||||||||||||||| ||||||| |||| Sbjct: 1471 gattcagctttccacacgatatctttcagctctgatgagaaattcttgtagaaattgtgg 1412 Query: 382 aactccaaggtgtctcctccagttttacgaagttcaaccatatggagtgatggagcaacc 441 |||||||| ||||||||||||||||||||||| |||||||| || ||||| ||||||||| Sbjct: 1411 aactccaatgtgtctcctccagttttacgaagctcaaccatgtgaagtgaaggagcaacc 1352 Query: 442 tcaaaaacctccgttgctacagataaatgaccttttcttcctgtcttgtcacctttcagt 501 ||||||||||| ||||| |||||||| |||||||||||||| | ||||||||||||| | Sbjct: 1351 tcaaaaacctcagttgcaacagataagtgaccttttcttccggatttgtcacctttcaat 1292 Query: 502 ttcatcttataattttgtttccgcacattgaaaccaanagggccacaggcttcctctatt 561 |||||||| ||||||||||||||||| |||||||||| || ||||| || ||||||||| Sbjct: 1291 ttcatcttgtaattttgtttccgcacgttgaaaccaagtggcccacatgcatcctctatt 1232 Query: 562 ttagacatgatctcttgtggtgtgcgttgtgacgcaaaggatgtttcccgctttaccatc 621 || ||||||||||| |||| ||| | ||| |||| || |||||||||| ||||||||| Sbjct: 1231 tttgacatgatctcctgtgctgtacattgagacgtgaaagatgtttccctctttaccatt 1172 Query: 622 cccatcat 629 |||||||| Sbjct: 1171 cccatcat 1164
>gb|AY108362.1| Zea mays PCO079366 mRNA sequence Length = 632 Score = 262 bits (132), Expect = 1e-66 Identities = 257/299 (85%) Strand = Plus / Minus Query: 322 gattcagttttccacacaatgtcttttagttctgatgagaaattctggtagaaactgtga 381 ||||||| ||||||||| || ||||| || || |||||||| |||| |||||| ||||| Sbjct: 311 gattcagctttccacacgatatctttcagctccgatgagaagttcttgtagaagctgtgg 252 Query: 382 aactccaaggtgtctcctccagttttacgaagttcaaccatatggagtgatggagcaacc 441 |||||||| ||||||||||| ||||||||||| |||||||| || |||||||| |||||| Sbjct: 251 aactccaatgtgtctcctccggttttacgaagctcaaccatgtgaagtgatggggcaacc 192 Query: 442 tcaaaaacctccgttgctacagataaatgaccttttcttcctgtcttgtcacctttcagt 501 ||||||||||| ||||| |||||||| |||||||||||||| | ||||||||||||| | Sbjct: 191 tcaaaaacctcagttgcaacagataagtgaccttttcttccagatttgtcacctttcaat 132 Query: 502 ttcatcttataattttgtttccgcacattgaaaccaanagggccacaggcttcctctatt 561 |||||||| ||||||||||||||||| |||||||| | || ||||| || ||||||||| Sbjct: 131 ttcatcttgtaattttgtttccgcacgttgaaaccgagtggcccacatgcatcctctatt 72 Query: 562 ttagacatgatctcttgtggtgtgcgttgtgacgcaaaggatgtttcccgctttaccat 620 || | ||||||||| |||| ||||| ||| || | || |||||||||| ||||||||| Sbjct: 71 tttgtcatgatctcctgtgctgtgcattgagatgtgaaagatgtttccctctttaccat 13
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 133 bits (67), Expect = 8e-28 Identities = 102/114 (89%) Strand = Plus / Plus Query: 507 cttataattttgtttccgcacattgaaaccaanagggccacaggcttcctctattttaga 566 |||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||| Sbjct: 1495453 cttataattttgtttccgcacattgaaaccaagaggtccacaagcttcctctattttaga 1495512 Query: 567 catgatctcttgtggtgtgcgttgtgacgcaaaggatgtttcccgctttaccat 620 ||||||||| |||||||| | ||| || | ||||| ||||||||||| ||||| Sbjct: 1495513 catgatctcctgtggtgtacattgagatgtgaaggaagtttcccgcttcaccat 1495566 Score = 101 bits (51), Expect = 3e-18 Identities = 69/75 (92%) Strand = Plus / Plus Query: 377 tgtgaaactccaaggtgtctcctccagttttacgaagttcaaccatatggagtgatggag 436 |||||||||||| ||||| ||||||||||||||||| |||||||| ||||||||||||| Sbjct: 1495090 tgtgaaactccagcgtgtcccctccagttttacgaagctcaaccatgtggagtgatggag 1495149 Query: 437 caacctcaaaaacct 451 ||||||| ||||||| Sbjct: 1495150 caacctcgaaaacct 1495164 Score = 67.9 bits (34), Expect = 4e-08 Identities = 46/50 (92%) Strand = Plus / Plus Query: 448 acctccgttgctacagataaatgaccttttcttcctgtcttgtcaccttt 497 |||||||||||||||||||||| ||||||||||| ||||| |||||||| Sbjct: 1495259 acctccgttgctacagataaatagccttttcttccagtcttatcaccttt 1495308
>gb|AC104427.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1015F07, complete sequence Length = 117612 Score = 133 bits (67), Expect = 8e-28 Identities = 102/114 (89%) Strand = Plus / Plus Query: 507 cttataattttgtttccgcacattgaaaccaanagggccacaggcttcctctattttaga 566 |||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||| Sbjct: 32626 cttataattttgtttccgcacattgaaaccaagaggtccacaagcttcctctattttaga 32685 Query: 567 catgatctcttgtggtgtgcgttgtgacgcaaaggatgtttcccgctttaccat 620 ||||||||| |||||||| | ||| || | ||||| ||||||||||| ||||| Sbjct: 32686 catgatctcctgtggtgtacattgagatgtgaaggaagtttcccgcttcaccat 32739 Score = 101 bits (51), Expect = 3e-18 Identities = 69/75 (92%) Strand = Plus / Plus Query: 377 tgtgaaactccaaggtgtctcctccagttttacgaagttcaaccatatggagtgatggag 436 |||||||||||| ||||| ||||||||||||||||| |||||||| ||||||||||||| Sbjct: 32263 tgtgaaactccagcgtgtcccctccagttttacgaagctcaaccatgtggagtgatggag 32322 Query: 437 caacctcaaaaacct 451 ||||||| ||||||| Sbjct: 32323 caacctcgaaaacct 32337 Score = 67.9 bits (34), Expect = 4e-08 Identities = 46/50 (92%) Strand = Plus / Plus Query: 448 acctccgttgctacagataaatgaccttttcttcctgtcttgtcaccttt 497 |||||||||||||||||||||| ||||||||||| ||||| |||||||| Sbjct: 32432 acctccgttgctacagataaatagccttttcttccagtcttatcaccttt 32481
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 133 bits (67), Expect = 8e-28 Identities = 102/114 (89%) Strand = Plus / Plus Query: 507 cttataattttgtttccgcacattgaaaccaanagggccacaggcttcctctattttaga 566 |||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||| Sbjct: 1495451 cttataattttgtttccgcacattgaaaccaagaggtccacaagcttcctctattttaga 1495510 Query: 567 catgatctcttgtggtgtgcgttgtgacgcaaaggatgtttcccgctttaccat 620 ||||||||| |||||||| | ||| || | ||||| ||||||||||| ||||| Sbjct: 1495511 catgatctcctgtggtgtacattgagatgtgaaggaagtttcccgcttcaccat 1495564 Score = 101 bits (51), Expect = 3e-18 Identities = 69/75 (92%) Strand = Plus / Plus Query: 377 tgtgaaactccaaggtgtctcctccagttttacgaagttcaaccatatggagtgatggag 436 |||||||||||| ||||| ||||||||||||||||| |||||||| ||||||||||||| Sbjct: 1495088 tgtgaaactccagcgtgtcccctccagttttacgaagctcaaccatgtggagtgatggag 1495147 Query: 437 caacctcaaaaacct 451 ||||||| ||||||| Sbjct: 1495148 caacctcgaaaacct 1495162 Score = 67.9 bits (34), Expect = 4e-08 Identities = 46/50 (92%) Strand = Plus / Plus Query: 448 acctccgttgctacagataaatgaccttttcttcctgtcttgtcaccttt 497 |||||||||||||||||||||| ||||||||||| ||||| |||||||| Sbjct: 1495257 acctccgttgctacagataaatagccttttcttccagtcttatcaccttt 1495306
>gb|AF479060.1| Sandersonia aurantiaca putative serine threonine kinase mRNA, complete cds Length = 1051 Score = 107 bits (54), Expect = 4e-20 Identities = 132/158 (83%) Strand = Plus / Minus Query: 379 tgaaactccaaggtgtctcctccagttttacgaagttcaaccatatggagtgatggagca 438 ||||||||||| ||||| |||||||||||||| ||||||||||| || || || || || Sbjct: 662 tgaaactccaacgtgtcgcctccagttttacgcagttcaaccatgtgaagagaaggcgct 603 Query: 439 acctcaaaaacctccgttgctacagataaatgaccttttcttcctgtcttgtcacctttc 498 |||||||||||||| ||||||||||||| ||||| || ||||| || || ||||| | Sbjct: 602 acctcaaaaacctctgttgctacagataggtgacccttccttccggttttatcaccctgt 543 Query: 499 agtttcatcttataattttgtttccgcacattgaaacc 536 | |||||||| || || ||||| |||||||||||||| Sbjct: 542 aaattcatcttgtagttgtgtttgcgcacattgaaacc 505
>gb|AE017346.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 6, complete sequence Length = 1438950 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 607 tcccgctttaccatccccatc 627 ||||||||||||||||||||| Sbjct: 1046042 tcccgctttaccatccccatc 1046022
>gb|AC137067.33| Mus musculus strain C57BL/6J clone rp23-288i20, complete sequence Length = 207232 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 492 acctttcagtttcatcttata 512 ||||||||||||||||||||| Sbjct: 85190 acctttcagtttcatcttata 85210
>emb|AL662987.3|OSJN00188 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0088A01, complete sequence Length = 186325 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 574 tcttgtggtgtgcgttgtgac 594 ||||||||||||||||||||| Sbjct: 176625 tcttgtggtgtgcgttgtgac 176645
>emb|AL662957.2|OSJN00157 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0013K16, complete sequence Length = 145739 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 574 tcttgtggtgtgcgttgtgac 594 ||||||||||||||||||||| Sbjct: 6298 tcttgtggtgtgcgttgtgac 6318
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 574 tcttgtggtgtgcgttgtgac 594 ||||||||||||||||||||| Sbjct: 29503609 tcttgtggtgtgcgttgtgac 29503629
>gb|AC127383.4| Homo sapiens BAC clone RP11-1388F24 from 2, complete sequence Length = 122168 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 414 ttcaaccatatggagtgatgg 434 ||||||||||||||||||||| Sbjct: 62646 ttcaaccatatggagtgatgg 62666
>gb|AC155640.5| Mus musculus 10 BAC RP24-87H21 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 222712 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 461 cagataaatgaccttttcttc 481 ||||||||||||||||||||| Sbjct: 110941 cagataaatgaccttttcttc 110961
>ref|XM_522893.1| PREDICTED: Pan troglodytes similar to a disintegrin and metalloproteinase domain 20 preproprotein (LOC467496), mRNA Length = 2103 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 456 tgctacagataaatgacctt 475 |||||||||||||||||||| Sbjct: 554 tgctacagataaatgacctt 573
>ref|XM_516552.1| PREDICTED: Pan troglodytes similar to axonemal dynein heavy chain 7 (LOC460471), mRNA Length = 7941 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 464 ataaatgaccttttcttcct 483 |||||||||||||||||||| Sbjct: 4977 ataaatgaccttttcttcct 4958
>gb|AC146066.4| Pan troglodytes BAC clone RP43-60F19 from 7, complete sequence Length = 183557 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 501 tttcatcttataattttgtt 520 |||||||||||||||||||| Sbjct: 121384 tttcatcttataattttgtt 121365
>ref|NM_003814.4| Homo sapiens ADAM metallopeptidase domain 20 (ADAM20), mRNA Length = 2807 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 456 tgctacagataaatgacctt 475 |||||||||||||||||||| Sbjct: 799 tgctacagataaatgacctt 818
>gb|BC025378.1| Homo sapiens ADAM metallopeptidase domain 20, mRNA (cDNA clone MGC:25993 IMAGE:4827383), complete cds Length = 2810 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 456 tgctacagataaatgacctt 475 |||||||||||||||||||| Sbjct: 802 tgctacagataaatgacctt 821
>ref|XM_541831.2| PREDICTED: Canis familiaris similar to axonemal dynein heavy chain 7 (LOC484715), mRNA Length = 12076 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 464 ataaatgaccttttcttcct 483 |||||||||||||||||||| Sbjct: 4950 ataaatgaccttttcttcct 4931
>gb|AC125147.4| Mus musculus BAC clone RP24-350A15 from chromosome 7, complete sequence Length = 184180 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 345 ttttagttctgatgagaaattctg 368 |||||||||||| ||||||||||| Sbjct: 82880 ttttagttctgaagagaaattctg 82857
>gb|AC121998.2| Mus musculus BAC clone RP24-318H5 from 2, complete sequence Length = 135317 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 498 cagtttcatcttataattttgttt 521 ||||||||||||||| |||||||| Sbjct: 65771 cagtttcatcttatagttttgttt 65748
>gb|AC084389.1| Mus musculus BAC clone RP23-247A1 from 1, complete sequence Length = 206497 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 478 cttcctgtcttgtcacctttcagt 501 ||||||||| |||||||||||||| Sbjct: 13774 cttcctgtcatgtcacctttcagt 13797
>gb|AC003079.2| Homo sapiens BAC clone GS1-303P24 from 7, complete sequence Length = 62331 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 501 tttcatcttataattttgtt 520 |||||||||||||||||||| Sbjct: 9755 tttcatcttataattttgtt 9774
>emb|AL161587.2|ATCHRIV83 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 83 Length = 197859 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 316 gtgttggattcagttttcca 335 |||||||||||||||||||| Sbjct: 37191 gtgttggattcagttttcca 37172
>emb|AL022604.1|ATF23E12 Arabidopsis thaliana DNA chromosome 4, BAC clone F23E12 (ESSA project) Length = 86710 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 316 gtgttggattcagttttcca 335 |||||||||||||||||||| Sbjct: 66160 gtgttggattcagttttcca 66179
>emb|BX927211.4| Zebrafish DNA sequence from clone CH211-112A3, complete sequence Length = 65572 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 313 attgtgttggattcagttttccacacaa 340 ||||||||||||||| ||||| |||||| Sbjct: 33764 attgtgttggattcacttttcaacacaa 33791
>gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome Length = 2932766 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 183 catcgatgcggtgccggaga 202 |||||||||||||||||||| Sbjct: 1017276 catcgatgcggtgccggaga 1017257
>gb|AC008165.3|AC008165 Homo sapiens BAC clone RP11-139L10 from 7p22, complete sequence Length = 85404 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 323 attcagttttccacacaatg 342 |||||||||||||||||||| Sbjct: 21302 attcagttttccacacaatg 21321
>gb|AC136777.8| Homo sapiens chromosome 8, clone RP11-63E5, complete sequence Length = 175263 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 323 attcagttttccacacaatg 342 |||||||||||||||||||| Sbjct: 64895 attcagttttccacacaatg 64914
>gb|AC103954.9| Homo sapiens chromosome 8, clone CTA-366D10, complete sequence Length = 169754 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 323 attcagttttccacacaatg 342 |||||||||||||||||||| Sbjct: 57914 attcagttttccacacaatg 57933
>gb|AC092418.3| Homo sapiens chromosome 3 clone RP11-229A12, complete sequence Length = 164500 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 464 ataaatgaccttttcttcct 483 |||||||||||||||||||| Sbjct: 24048 ataaatgaccttttcttcct 24067
>gb|AC144444.2| Homo sapiens fosmid clone XXFOS-83269E11 from 2, complete sequence Length = 36482 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 348 tagttctgatgagaaattct 367 |||||||||||||||||||| Sbjct: 32958 tagttctgatgagaaattct 32939
>gb|AF158643.1|AF158643 Homo sapiens metalloproteinase-disintegrin (ADAM20) gene, complete cds Length = 3314 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 456 tgctacagataaatgacctt 475 |||||||||||||||||||| Sbjct: 872 tgctacagataaatgacctt 891
>emb|AL357153.4|CNS05TDV Human chromosome 14 DNA sequence BAC C-2540L5 of library CalTech-D from chromosome 14 of Homo sapiens (Human), complete sequence Length = 209483 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 456 tgctacagataaatgacctt 475 |||||||||||||||||||| Sbjct: 65796 tgctacagataaatgacctt 65777
>gb|AF029899.1|AF029899 Homo sapiens ADAM 20 mRNA, complete cds Length = 2442 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 456 tgctacagataaatgacctt 475 |||||||||||||||||||| Sbjct: 432 tgctacagataaatgacctt 451
>emb|AL928665.8| Mouse DNA sequence from clone RP23-294O23 on chromosome 2, complete sequence Length = 81950 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 498 cagtttcatcttataattttgttt 521 ||||||||||||||| |||||||| Sbjct: 37870 cagtttcatcttatagttttgttt 37893 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,203,118 Number of Sequences: 3902068 Number of extensions: 5203118 Number of successful extensions: 96477 Number of sequences better than 10.0: 37 Number of HSP's better than 10.0 without gapping: 37 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 96337 Number of HSP's gapped (non-prelim): 139 length of query: 629 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 606 effective length of database: 17,143,297,704 effective search space: 10388838408624 effective search space used: 10388838408624 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)