>CK5P1_ARATH (Q8H0V1) CDK5RAP1-like protein|
          Length = 640

 Score =  146 bits (368), Expect = 7e-35
 Identities = 74/122 (60%), Positives = 93/122 (76%), Gaps = 4/122 (3%)
 Frame = -2

Query: 704 HAHRNYEDDVPNDVKQXRLAELINTFRETTRKIYDSQIGTTQVVLVEGPNKRAPETELFG 525
           HAHRNY DDVP +VKQ RL ELI+ FRETT   YDSQ+G+TQ+VLVEGPNKRAPETEL G
Sbjct: 504 HAHRNYTDDVPEEVKQRRLTELIDAFRETTGPCYDSQVGSTQLVLVEGPNKRAPETELIG 563

Query: 524 KTDRGHRVSFTSLPVTHTS---EGDG-ARKPVVGDFVEVKILRSSTASLSGEPIARTSLG 357
           KTD+GHRVSF + P+   +   +GD   R P +GDFVEV+I +S+ ASL GE +A + + 
Sbjct: 564 KTDKGHRVSFVTKPLFDKACLLDGDDLKRNPGIGDFVEVQIEKSTRASLFGEALAISKMS 623

Query: 356 MY 351
           ++
Sbjct: 624 LF 625

>CK5P1_RAT (Q9JLH6) CDK5 regulatory subunit-associated protein 1 (CDK5|
           activator-binding protein C42)
          Length = 586

 Score = 77.0 bits (188), Expect = 5e-14
 Identities = 44/114 (38%), Positives = 67/114 (58%)
 Frame = -2

Query: 701 AHRNYEDDVPNDVKQXRLAELINTFRETTRKIYDSQIGTTQVVLVEGPNKRAPETELFGK 522
           A+   +DDVP +VK  RL ELI  FRE   K+  + +G TQ+VLVEG +KR+  T+L G+
Sbjct: 465 AYHRLKDDVPEEVKLRRLEELITVFREEASKVNATSVGCTQLVLVEGFSKRS-TTDLCGR 523

Query: 521 TDRGHRVSFTSLPVTHTSEGDGARKPVVGDFVEVKILRSSTASLSGEPIARTSL 360
            D   +V F    V   ++     +   GD+V VKI+ +S+ +L G  + RT++
Sbjct: 524 NDANLKVIFPDAEVEDITDPGLKVRAQPGDYVLVKIISASSQTLKGHILCRTTM 577

>CK5P1_HUMAN (Q96SZ6) CDK5 regulatory subunit-associated protein 1 (CDK5|
           activator-binding protein C42)
          Length = 601

 Score = 74.3 bits (181), Expect = 3e-13
 Identities = 46/121 (38%), Positives = 66/121 (54%), Gaps = 3/121 (2%)
 Frame = -2

Query: 701 AHRNYEDDVPNDVKQXRLAELINTFRETTRKIYDSQIGTTQVVLVEGPNKRAPETELFGK 522
           A+   +DDVP +VK  RL ELI  FRE   K   + +G TQ+VLVEG +KR+  T+L G+
Sbjct: 482 AYHRLKDDVPEEVKLRRLEELITIFREEATKANQTSVGCTQLVLVEGLSKRS-ATDLCGR 540

Query: 521 TDRGHRVSFTSLPVTHTSEGDGARKPVVGDFVEVKILRSSTASLSGEPIARTSL---GMY 351
            D   +V F    +   +      +   GD+V VKI  +S+ +L G  + RT+L     Y
Sbjct: 541 NDGNLKVIFPDAEMEDVNNPGLRVRAQPGDYVLVKITSASSQTLRGHVLCRTTLRDSSAY 600

Query: 350 C 348
           C
Sbjct: 601 C 601

>CK5P1_DROME (Q9VGZ1) CDK5RAP1-like protein|
          Length = 583

 Score = 73.2 bits (178), Expect = 7e-13
 Identities = 38/114 (33%), Positives = 65/114 (57%)
 Frame = -2

Query: 701 AHRNYEDDVPNDVKQXRLAELINTFRETTRKIYDSQIGTTQVVLVEGPNKRAPETELFGK 522
           AHR Y+DDVP +VK  RL  ++  FRE   +++    G  Q++L+EG +KR+ +   FG+
Sbjct: 461 AHRRYKDDVPINVKNERLQRMVQVFREGATQLHRKMEGQEQLILIEGKSKRS-DAHWFGR 519

Query: 521 TDRGHRVSFTSLPVTHTSEGDGARKPVVGDFVEVKILRSSTASLSGEPIARTSL 360
            D   +V   S+ V  + +    +   VGDF+ V+I  S++  L G P+  +++
Sbjct: 520 NDANIKVIVPSIYVPISGDSTARKSFGVGDFLAVRIEESNSQVLKGTPLELSNI 573

>CK5P1_MOUSE (Q8BTW8) CDK5 regulatory subunit-associated protein 1 (CDK5|
           activator-binding protein C42)
          Length = 588

 Score = 72.4 bits (176), Expect = 1e-12
 Identities = 43/114 (37%), Positives = 64/114 (56%)
 Frame = -2

Query: 701 AHRNYEDDVPNDVKQXRLAELINTFRETTRKIYDSQIGTTQVVLVEGPNKRAPETELFGK 522
           A+   +DDVP +VK  RL ELI  FRE   K   + +G +Q+VLVEG +KR+  T+L G+
Sbjct: 467 AYHRLKDDVPEEVKLRRLEELITVFREEASKANKTSVGCSQLVLVEGFSKRS-TTDLCGR 525

Query: 521 TDRGHRVSFTSLPVTHTSEGDGARKPVVGDFVEVKILRSSTASLSGEPIARTSL 360
            D   +V F    V   +      +   GD+V VKI  +S+ +L G  + RT++
Sbjct: 526 NDANLKVIFPDAEVEDITNPGLKVRAQPGDYVLVKITSASSQTLKGHILCRTTM 579

>CK5P1_CAEEL (Q09316) CDK5RAP1-like protein|
          Length = 547

 Score = 50.1 bits (118), Expect = 7e-06
 Identities = 34/114 (29%), Positives = 56/114 (49%)
 Frame = -2

Query: 701 AHRNYEDDVPNDVKQXRLAELINTFRETTRKIYDSQIGTTQVVLVEGPNKRAPETELFGK 522
           AH    DDVP DVK  R  +L   FRE   K+  + IG+ Q VL+EG +KR       G+
Sbjct: 445 AHHRLTDDVPEDVKARRHLDLTTVFREEALKLNQALIGSEQTVLLEGKSKRDASFS-HGR 503

Query: 521 TDRGHRVSFTSLPVTHTSEGDGARKPVVGDFVEVKILRSSTASLSGEPIARTSL 360
            D G +  F +  +          +P  G + ++ I  +++ +L  + I ++S+
Sbjct: 504 IDGGVKAVFDNSKL--------CLEP--GQYAKILITDANSQTLKAQLIGQSSI 547

>Y019_HAEIN (Q57163) Hypothetical UPF0004 protein HI0019|
          Length = 474

 Score = 50.1 bits (118), Expect = 7e-06
 Identities = 36/103 (34%), Positives = 49/103 (47%)
 Frame = -2

Query: 683 DDVPNDVKQXRLAELINTFRETTRKIYDSQIGTTQVVLVEGPNKRAPETELFGKTDRGHR 504
           DDV  D K+ RL  L     +   +     +GT Q VLVEGP+K+    EL G+T+    
Sbjct: 351 DDVTEDEKKQRLYVLQERINQQAAQFSRRMLGTEQRVLVEGPSKK-DIMELTGRTETNRI 409

Query: 503 VSFTSLPVTHTSEGDGARKPVVGDFVEVKILRSSTASLSGEPI 375
           V+F   P             ++G FV+VKI    T SL GE +
Sbjct: 410 VNFQGSP------------EMIGKFVDVKITDVYTNSLRGEVV 440

>Y1001_PASMU (Q9L699) Hypothetical UPF0004 protein PM1001|
          Length = 474

 Score = 48.9 bits (115), Expect = 1e-05
 Identities = 34/103 (33%), Positives = 49/103 (47%)
 Frame = -2

Query: 683 DDVPNDVKQXRLAELINTFRETTRKIYDSQIGTTQVVLVEGPNKRAPETELFGKTDRGHR 504
           DDV  + K+ RL  L         +   + +GT Q VLVEGP+K+    EL G+T+    
Sbjct: 351 DDVTEEEKKQRLYVLQQRINNQAAQFSRAMLGTEQRVLVEGPSKK-DLMELTGRTETNRI 409

Query: 503 VSFTSLPVTHTSEGDGARKPVVGDFVEVKILRSSTASLSGEPI 375
           V+F   P             ++G FV++KI    T SL GE +
Sbjct: 410 VNFVGTP------------DMIGKFVDIKITDVFTNSLRGEVV 440

>Y284_AQUAE (O66638) Hypothetical UPF0004 protein aq_284|
          Length = 440

 Score = 43.1 bits (100), Expect = 8e-04
 Identities = 31/102 (30%), Positives = 45/102 (44%)
 Frame = -2

Query: 686 EDDVPNDVKQXRLAELINTFRETTRKIYDSQIGTTQVVLVEGPNKRAPETELFGKTDRGH 507
           E  +P+DVK  R+  L+   +    +I     GT Q VLVE         EL G+T    
Sbjct: 349 EGQIPDDVKTERMRRLLELQKSILSEIAKKYEGTVQEVLVE----EEKNGELIGRTTTNK 404

Query: 506 RVSFTSLPVTHTSEGDGARKPVVGDFVEVKILRSSTASLSGE 381
             SF   P             ++G  V++K+++SS  SL GE
Sbjct: 405 WASFKGDP------------SLLGKIVKIKVIKSSPFSLEGE 434

>YMCB_BACSU (O31778) Hypothetical UPF0004 protein ymcB|
          Length = 509

 Score = 43.1 bits (100), Expect = 8e-04
 Identities = 34/104 (32%), Positives = 47/104 (45%)
 Frame = -2

Query: 686 EDDVPNDVKQXRLAELINTFRETTRKIYDSQIGTTQVVLVEGPNKRAPETELFGKTDRGH 507
           +D+VP  VK+ RL  L     E + K      G    VLVEG +K  P+  L G T++  
Sbjct: 412 KDNVPMRVKKERLQRLNALVNEISAKKMKEYEGKVVEVLVEGESKNNPDI-LAGYTEKSK 470

Query: 506 RVSFTSLPVTHTSEGDGARKPVVGDFVEVKILRSSTASLSGEPI 375
            V+F               K  +G  V VKI ++ T SL GE +
Sbjct: 471 LVNFK------------GPKEAIGKIVRVKIQQAKTWSLDGEMV 502

>YLEA_ECOLI (P0AEI1) Hypothetical UPF0004 protein yleA|
          Length = 474

 Score = 43.1 bits (100), Expect = 8e-04
 Identities = 31/103 (30%), Positives = 49/103 (47%)
 Frame = -2

Query: 683 DDVPNDVKQXRLAELINTFRETTRKIYDSQIGTTQVVLVEGPNKRAPETELFGKTDRGHR 504
           DDVP + K+ RL  L     +         +GTTQ +LVEG ++++   EL G+T+    
Sbjct: 351 DDVPEEEKKQRLYILQERINQQAMAWSRRMLGTTQRILVEGTSRKS-IMELSGRTENNRV 409

Query: 503 VSFTSLPVTHTSEGDGARKPVVGDFVEVKILRSSTASLSGEPI 375
           V+F   P             ++G FV+V+I      SL G+ +
Sbjct: 410 VNFEGTP------------DMIGKFVDVEITDVYPNSLRGKVV 440

>YLEA_ECOL6 (P0AEI2) Hypothetical UPF0004 protein yleA|
          Length = 474

 Score = 43.1 bits (100), Expect = 8e-04
 Identities = 31/103 (30%), Positives = 49/103 (47%)
 Frame = -2

Query: 683 DDVPNDVKQXRLAELINTFRETTRKIYDSQIGTTQVVLVEGPNKRAPETELFGKTDRGHR 504
           DDVP + K+ RL  L     +         +GTTQ +LVEG ++++   EL G+T+    
Sbjct: 351 DDVPEEEKKQRLYILQERINQQAMAWSRRMLGTTQRILVEGTSRKS-IMELSGRTENNRV 409

Query: 503 VSFTSLPVTHTSEGDGARKPVVGDFVEVKILRSSTASLSGEPI 375
           V+F   P             ++G FV+V+I      SL G+ +
Sbjct: 410 VNFEGTP------------DMIGKFVDVEITDVYPNSLRGKVV 440

>YLEA_ECO57 (P0AEI3) Hypothetical UPF0004 protein yleA|
          Length = 474

 Score = 43.1 bits (100), Expect = 8e-04
 Identities = 31/103 (30%), Positives = 49/103 (47%)
 Frame = -2

Query: 683 DDVPNDVKQXRLAELINTFRETTRKIYDSQIGTTQVVLVEGPNKRAPETELFGKTDRGHR 504
           DDVP + K+ RL  L     +         +GTTQ +LVEG ++++   EL G+T+    
Sbjct: 351 DDVPEEEKKQRLYILQERINQQAMAWSRRMLGTTQRILVEGTSRKS-IMELSGRTENNRV 409

Query: 503 VSFTSLPVTHTSEGDGARKPVVGDFVEVKILRSSTASLSGEPI 375
           V+F   P             ++G FV+V+I      SL G+ +
Sbjct: 410 VNFEGTP------------DMIGKFVDVEITDVYPNSLRGKVV 440

>Y996_SYNY3 (P73127) Hypothetical UPF0004 protein sll0996|
          Length = 451

 Score = 38.1 bits (87), Expect = 0.026
 Identities = 29/106 (27%), Positives = 52/106 (49%)
 Frame = -2

Query: 689 YEDDVPNDVKQXRLAELINTFRETTRKIYDSQIGTTQVVLVEGPNKRAPETELFGKTDRG 510
           +++ +  +VK  RL  L +       +     +G  + VLVEG N ++P  ++ G+T RG
Sbjct: 354 WDNQLSEEVKGDRLQRLNHLVSTQAMERSQRYLGRVEEVLVEGENLKSPG-QVMGRT-RG 411

Query: 509 HRVSFTSLPVTHTSEGDGARKPVVGDFVEVKILRSSTASLSGEPIA 372
           +R++F            G    ++G  V VKI  +   SL+GE ++
Sbjct: 412 NRLTFFQ----------GEISELLGKTVPVKITEARAFSLTGEALS 447

>Y441_BUCAI (P57516) Hypothetical UPF0004 protein BU441|
          Length = 439

 Score = 37.7 bits (86), Expect = 0.034
 Identities = 33/104 (31%), Positives = 47/104 (45%)
 Frame = -2

Query: 692 NYEDDVPNDVKQXRLAELINTFRETTRKIYDSQIGTTQVVLVEGPNKRAPETELFGKTDR 513
           N  DD+    K+ RL  L       T        G+ Q VLVEG + +    +L+G+T+ 
Sbjct: 347 NMNDDLDLKEKKRRLYILQERINIQTMLWSRKMFGSIQSVLVEGVSDKNI-MDLYGRTEN 405

Query: 512 GHRVSFTSLPVTHTSEGDGARKPVVGDFVEVKILRSSTASLSGE 381
              V+F            G+ K ++G FV VKI +  T SL GE
Sbjct: 406 NRVVTF-----------QGSSK-MIGQFVNVKIKKVHTHSLKGE 437

>Y3980_PSEAE (Q51470) Hypothetical UPF0004 protein PA3980|
          Length = 446

 Score = 36.6 bits (83), Expect = 0.077
 Identities = 32/106 (30%), Positives = 50/106 (47%)
 Frame = -2

Query: 683 DDVPNDVKQXRLAELINTFRETTRKIYDSQIGTTQVVLVEGPNKRAPETELFGKTDRGHR 504
           DD+P +VK+ RL  L +   +   +I    +G+TQ +LV   +K+ P   L G+T+    
Sbjct: 351 DDLPEEVKKQRLQILQSRIHQQGYEISRRMVGSTQRILVTDFSKKDPGM-LQGRTENNRI 409

Query: 503 VSFTSLPVTHTSEGDGARKPVVGDFVEVKILRSSTASLSGEPIART 366
           V+F           D  R  ++G F +V I  +   SL G  I  T
Sbjct: 410 VNFRC---------DNPR--LIGQFAQVHIDDALPHSLRGTLIDST 444

>Y921_MYCBO (P64752) Hypothetical protein Mb0921c|
          Length = 535

 Score = 31.6 bits (70), Expect = 2.5
 Identities = 18/44 (40%), Positives = 23/44 (52%)
 Frame = -2

Query: 476 HTSEGDGARKPVVGDFVEVKILRSSTASLSGEPIARTSLGMYCK 345
           H+   DGA   V G FV V +  +  ASL GEP+A  + G   K
Sbjct: 275 HSDGSDGAEHLVRGRFVLVGVTPAVLASLLGEPVAALAPGAQVK 318

>Y897_MYCTU (P64751) Hypothetical protein Rv0897c/MT0921|
          Length = 535

 Score = 31.6 bits (70), Expect = 2.5
 Identities = 18/44 (40%), Positives = 23/44 (52%)
 Frame = -2

Query: 476 HTSEGDGARKPVVGDFVEVKILRSSTASLSGEPIARTSLGMYCK 345
           H+   DGA   V G FV V +  +  ASL GEP+A  + G   K
Sbjct: 275 HSDGSDGAEHLVRGRFVLVGVTPAVLASLLGEPVAALAPGAQVK 318

>GCS1_CAEEL (Q19426) Probable mannosyl-oligosaccharide glucosidase (EC|
           3.2.1.106) (Processing A-glucosidase I)
          Length = 781

 Score = 30.8 bits (68), Expect = 4.2
 Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
 Frame = +1

Query: 22  NYMKNVTLQLLPSKEKVLHHTISRHTMRKILW----ISAAPSITPCYLLLKT-RQPISHH 186
           N +  + L+L+PSK  +L   + +    KILW    + +    +P Y+   T   P    
Sbjct: 634 NNLFPMMLKLIPSKSPILKSMLDKIRDPKILWTNYGLRSISRSSPYYMARNTEHDPPYWR 693

Query: 187 ENISTNLNWMICSQLQSFQVKHYA 258
             I  N+N+M+ S L     +HYA
Sbjct: 694 GYIWINVNYMVLSSL-----RHYA 712


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,503,435
Number of Sequences: 219361
Number of extensions: 1916266
Number of successful extensions: 4902
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 4733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4892
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7082949625
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)