Clone Information

BLAST Search Result

Clone Name	rbags10i20
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|AC134346.3\| Oryza sativa (japonica cultivar-group) chromosome...	135	2e-28
2	dbj\|AP008211.1\| Oryza sativa (japonica cultivar-group) genomic D...	135	2e-28
3	dbj\|AK059071.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	133	8e-28
4	gb\|AC104271.2\| Oryza sativa (japonica cultivar-group) chromosome...	60	9e-06
5	gb\|CP000123.1\| Mycoplasma capricolum subsp. capricolum ATCC 2734...	46	0.14
6	emb\|AL359642.12\| Human DNA sequence from clone RP11-507F17 on ch...	44	0.56
7	emb\|CR854925.5\| Zebrafish DNA sequence from clone CH211-199I24 i...	44	0.56
8	emb\|AL935038.9\| Zebrafish DNA sequence from clone CH211-187I23 i...	44	0.56
9	emb\|AL929595.5\| Zebrafish DNA sequence from clone CH211-59N3 in ...	42	2.2
10	ref\|NM_073251.2\| Caenorhabditis elegans B0024.10 (B0024.10) mRNA...	42	2.2
11	emb\|BX649225.1\| Mouse DNA sequence from clone RP23-104N16 on chr...	42	2.2
12	emb\|Z71178.1\|CEB0024 Caenorhabditis elegans Cosmid B0024, comple...	42	2.2
13	ref\|NM_102004.2\| Arabidopsis thaliana calcium ion binding AT1G21...	40	8.8
14	gb\|AE017345.1\| Cryptococcus neoformans var. neoformans JEC21 chr...	40	8.8
15	gb\|AC151803.1\| Solanum demissum chromosome 5 BAC PGEC979H09 geno...	40	8.8
16	gb\|AC165358.3\| Mus musculus BAC clone RP23-122F14 from chromosom...	40	8.8
17	gb\|AF016443.1\| Caenorhabditis elegans cosmid C17E7, complete seq...	40	8.8
18	gb\|AE017244.1\| Mycoplasma hyopneumoniae 7448, complete genome	40	8.8
19	gb\|AE017243.1\| Mycoplasma hyopneumoniae J, complete genome	40	8.8
20	emb\|CR974462.5\| Mouse DNA sequence from clone RP23-222K15 on chr...	40	8.8
21	gb\|AC126428.3\| Mus musculus BAC clone RP24-387B13 from chromosom...	40	8.8
22	gb\|AC123872.4\| Mus musculus BAC clone RP23-254P8 from 2, complet...	40	8.8
23	emb\|BX842590.1\| Rhesus DNA sequence from clone bRH-178N19, compl...	40	8.8
24	gb\|AC144759.11\| Medicago truncatula clone mth2-15b21, complete s...	40	8.8
25	gb\|AC123596.13\| Medicago truncatula clone mth1-17n5, complete se...	40	8.8
26	emb\|AL109824.24\|HSJ1181N3 Human DNA sequence from clone RP5-1181...	40	8.8
27	emb\|BX883051.1\| Rattus norvegicus chromosome 20, major histocomp...	40	8.8
28	emb\|AL662876.23\| Mouse DNA sequence from clone RP23-288K19 on ch...	40	8.8
29	emb\|AL009226.1\|MU11KLT Mus musculus DNA sequence from clone 11KL...	40	8.8
30	emb\|AL646093.9\| Mouse DNA sequence from clone RP23-55I2 on chrom...	40	8.8
31	gb\|AC103409.2\| Homo sapiens chromosome 8, clone RP11-1107H4, com...	40	8.8
32	gb\|AF361594.1\| Arabidopsis thaliana At1g21550/F24J8_7 mRNA, comp...	40	8.8
33	gb\|AC099049.2\| Homo sapiens chromosome 3 clone RP11-291P10, comp...	40	8.8
34	gb\|AC096627.28\| Mus musculus strain C57BL/6J clone rp23-77b23 ma...	40	8.8
35	gb\|AC159898.2\| Mus musculus BAC clone RP23-254N11 from chromosom...	40	8.8
36	gb\|AC162378.2\| Mus musculus BAC clone RP24-82K1 from chromosome ...	40	8.8
37	dbj\|AP008212.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	8.8
38	emb\|AL954637.6\| Zebrafish DNA sequence from clone DKEY-149G8 in ...	40	8.8
39	gb\|AC015447.8\|AC015447 Arabidopsis thaliana chromosome I BAC F24...	40	8.8
40	dbj\|AP006533.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	8.8
41	gb\|AC131238.3\| Homo sapiens 12 BAC RP11-136L23 (Roswell Park Can...	40	8.8
42	emb\|AL121809.6\|CNS01DSK Human chromosome 14 DNA sequence BAC C-3...	40	8.8
43	gb\|AC004701.1\|AC004701 Homo sapiens chromosome 4 clone B331M8 ma...	40	8.8
44	dbj\|AP000777.4\| Homo sapiens genomic DNA, chromosome 11 clone:RP...	40	8.8
45	emb\|AL929533.12\| Zebrafish DNA sequence from clone DKEY-18E17 in...	40	8.8
46	gb\|AF100956.1\|AF100956 Mus musculus major histocompatibility loc...	40	8.8
47	gb\|AE017332.1\| Mycoplasma hyopneumoniae 232, complete genome	40	8.8
48	emb\|CT025839.2\| Medicago truncatula chromosome 5 clone mth4-19c2...	40	8.8
49	emb\|CT025624.11\| Mouse DNA sequence from clone RP24-212N20 on ch...	40	8.8
50	gb\|AC132105.3\| Mus musculus BAC clone RP24-224B9 from 16, comple...	40	8.8
51	emb\|AL928811.8\| Mouse DNA sequence from clone RP23-74P23 on chro...	40	8.8
52	dbj\|AP001986.4\| Homo sapiens genomic DNA, chromosome 11q, clone:...	40	8.8

>gb|AC134346.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0018A03,
             complete sequence
          Length = 146278

 Score =  135 bits (68), Expect = 2e-28
 Identities = 104/116 (89%)
 Strand = Plus / Plus

                                                                         
Query: 525   cctcatcaagtcttatatatccaggcggtaaccttgggtcactttcctcaatcatggtgc 584
             ||||||||||||| ||||||||||| || ||||||| ||| |||||||||||||| ||| 
Sbjct: 73077 cctcatcaagtctgatatatccagggggcaaccttgagtcgctttcctcaatcattgtgt 73136

                                                                     
Query: 585   caagaagtttttccaaagtgacaccattctcacttgtgtgtgcccatccccattct 640
             ||||||||||||| || | ||||||||||||| |||||| ||||||||||||||||
Sbjct: 73137 caagaagtttttctaatgagacaccattctcaattgtgtttgcccatccccattct 73192



 Score = 44.1 bits (22), Expect = 0.56
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                               
Query: 402   ggtggagagttaacttttgctcggctggcaatct 435
             ||||||||||| |||||||| ||||| |||||||
Sbjct: 72939 ggtggagagtttacttttgcacggctagcaatct 72972

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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  135 bits (68), Expect = 2e-28
 Identities = 104/116 (89%)
 Strand = Plus / Plus

                                                                            
Query: 525      cctcatcaagtcttatatatccaggcggtaaccttgggtcactttcctcaatcatggtgc 584
                ||||||||||||| ||||||||||| || ||||||| ||| |||||||||||||| ||| 
Sbjct: 14922161 cctcatcaagtctgatatatccagggggcaaccttgagtcgctttcctcaatcattgtgt 14922220

                                                                        
Query: 585      caagaagtttttccaaagtgacaccattctcacttgtgtgtgcccatccccattct 640
                ||||||||||||| || | ||||||||||||| |||||| ||||||||||||||||
Sbjct: 14922221 caagaagtttttctaatgagacaccattctcaattgtgtttgcccatccccattct 14922276



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 84/102 (82%)
 Strand = Plus / Minus

                                                                            
Query: 539      atatatccaggcggtaaccttgggtcactttcctcaatcatggtgccaagaagtttttcc 598
                ||||||||||| || ||||||| ||||||||||| ||| || |||||||||| ||| || 
Sbjct: 14283154 atatatccaggtggcaaccttgagtcactttcctgaataattgtgccaagaattttctct 14283095

                                                          
Query: 599      aaagtgacaccattctcacttgtgtgtgcccatccccattct 640
                |  ||||  || |||| | |||||| |||||||||| |||||
Sbjct: 14283094 agtgtgatgccgttctaaattgtgtttgcccatcccaattct 14283053



 Score = 44.1 bits (22), Expect = 0.56
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                                  
Query: 402      ggtggagagttaacttttgctcggctggcaatct 435
                ||||||||||| |||||||| ||||| |||||||
Sbjct: 14922023 ggtggagagtttacttttgcacggctagcaatct 14922056

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>dbj|AK059071.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-021-H06, full
           insert sequence
          Length = 685

 Score =  133 bits (67), Expect = 8e-28
 Identities = 103/115 (89%)
 Strand = Plus / Minus

                                                                       
Query: 526 ctcatcaagtcttatatatccaggcggtaaccttgggtcactttcctcaatcatggtgcc 585
           |||||||||||| ||||||||||| || ||||||| ||| |||||||||||||| ||| |
Sbjct: 126 ctcatcaagtctgatatatccagggggcaaccttgagtcgctttcctcaatcattgtgtc 67

                                                                  
Query: 586 aagaagtttttccaaagtgacaccattctcacttgtgtgtgcccatccccattct 640
           |||||||||||| || | ||||||||||||| |||||| ||||||||||||||||
Sbjct: 66  aagaagtttttctaatgagacaccattctcaattgtgtttgcccatccccattct 12



 Score = 44.1 bits (22), Expect = 0.56
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 402 ggtggagagttaacttttgctcggctggcaatct 435
           ||||||||||| |||||||| ||||| |||||||
Sbjct: 158 ggtggagagtttacttttgcacggctagcaatct 125

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>gb|AC104271.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1308_D01,
             complete sequence
          Length = 117724

 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 84/102 (82%)
 Strand = Plus / Minus

                                                                         
Query: 539   atatatccaggcggtaaccttgggtcactttcctcaatcatggtgccaagaagtttttcc 598
             ||||||||||| || ||||||| ||||||||||| ||| || |||||||||| ||| || 
Sbjct: 11940 atatatccaggtggcaaccttgagtcactttcctgaataattgtgccaagaattttctct 11881

                                                       
Query: 599   aaagtgacaccattctcacttgtgtgtgcccatccccattct 640
             |  ||||  || |||| | |||||| |||||||||| |||||
Sbjct: 11880 agtgtgatgccgttctaaattgtgtttgcccatcccaattct 11839

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>gb|CP000123.1| Mycoplasma capricolum subsp. capricolum ATCC 27343, complete genome
          Length = 1010023

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 125    caaagacttttatatttgcaaat 147
              |||||||||||||||||||||||
Sbjct: 132415 caaagacttttatatttgcaaat 132393

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>emb|AL359642.12| Human DNA sequence from clone RP11-507F17 on chromosome 9 Contains a
             kertain pseudogene, complete sequence
          Length = 122613

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 113   tacctaaaaatgcaaagacttttata 138
             |||||||||||||||||| |||||||
Sbjct: 87514 tacctaaaaatgcaaagaattttata 87539

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>emb|CR854925.5| Zebrafish DNA sequence from clone CH211-199I24 in linkage group 13,
             complete sequence
          Length = 58279

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 182   attacatccaaaatccaaacaa 203
             ||||||||||||||||||||||
Sbjct: 52847 attacatccaaaatccaaacaa 52826

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>emb|AL935038.9| Zebrafish DNA sequence from clone CH211-187I23 in linkage group 18,
             complete sequence
          Length = 139077

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 133   tttatatttgcaaattgcaatc 154
             ||||||||||||||||||||||
Sbjct: 13593 tttatatttgcaaattgcaatc 13572

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>emb|AL929595.5| Zebrafish DNA sequence from clone CH211-59N3 in linkage group 18,
             complete sequence
          Length = 106248

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 133   tttatatttgcaaattgcaat 153
             |||||||||||||||||||||
Sbjct: 80187 tttatatttgcaaattgcaat 80207

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>ref|NM_073251.2| Caenorhabditis elegans B0024.10 (B0024.10) mRNA, complete cds
          Length = 1834

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 73  tgtcaaatagaaagctgaaaatgct 97
           |||||||| ||||||||||||||||
Sbjct: 581 tgtcaaattgaaagctgaaaatgct 605

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>emb|BX649225.1| Mouse DNA sequence from clone RP23-104N16 on chromosome 2, complete
            sequence
          Length = 8223

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 592  tttttccaaagtgacaccatt 612
            |||||||||||||||||||||
Sbjct: 2043 tttttccaaagtgacaccatt 2063

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>emb|Z71178.1|CEB0024 Caenorhabditis elegans Cosmid B0024, complete sequence
          Length = 42154

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 73    tgtcaaatagaaagctgaaaatgct 97
             |||||||| ||||||||||||||||
Sbjct: 30199 tgtcaaattgaaagctgaaaatgct 30175

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>ref|NM_102004.2| Arabidopsis thaliana calcium ion binding AT1G21550 mRNA, complete
           cds
          Length = 776

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 137 tatttgcaaattgcaatcac 156
           ||||||||||||||||||||
Sbjct: 616 tatttgcaaattgcaatcac 635

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>gb|AE017345.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 5, complete
               sequence
          Length = 1507550

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                               
Query: 506     attccaactccatggcattcctcatcaagtct 537
               ||||||| ||||||||||| || |||||||||
Sbjct: 1411559 attccaattccatggcatttcttatcaagtct 1411528

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>gb|AC151803.1| Solanum demissum chromosome 5 BAC PGEC979H09 genomic sequence, complete
             sequence
          Length = 110954

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 133   tttatatttgcaaattgcaa 152
             ||||||||||||||||||||
Sbjct: 54171 tttatatttgcaaattgcaa 54152

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>gb|AC165358.3| Mus musculus BAC clone RP23-122F14 from chromosome 1, complete sequence
          Length = 223166

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 226    ggcatgctttcaagacaacagaga 249
              |||||||||||||| |||||||||
Sbjct: 122354 ggcatgctttcaagtcaacagaga 122331

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>gb|AF016443.1| Caenorhabditis elegans cosmid C17E7, complete sequence
          Length = 43254

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 582  tgccaagaagtttttccaaa 601
            ||||||||||||||||||||
Sbjct: 3403 tgccaagaagtttttccaaa 3422

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>gb|AE017244.1| Mycoplasma hyopneumoniae 7448, complete genome
          Length = 920079

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 127    aagacttttatatttgcaaa 146
              ||||||||||||||||||||
Sbjct: 553198 aagacttttatatttgcaaa 553179

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>gb|AE017243.1| Mycoplasma hyopneumoniae J, complete genome
          Length = 897405

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 127    aagacttttatatttgcaaa 146
              ||||||||||||||||||||
Sbjct: 529469 aagacttttatatttgcaaa 529450

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>emb|CR974462.5| Mouse DNA sequence from clone RP23-222K15 on chromosome 17, complete
              sequence
          Length = 228057

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 452    tttagcttgactttactcaa 471
              ||||||||||||||||||||
Sbjct: 203338 tttagcttgactttactcaa 203357

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>gb|AC126428.3| Mus musculus BAC clone RP24-387B13 from chromosome 10, complete sequence
          Length = 225663

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 506    attccaactccatggcattc 525
              ||||||||||||||||||||
Sbjct: 142033 attccaactccatggcattc 142052

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>gb|AC123872.4| Mus musculus BAC clone RP23-254P8 from 2, complete sequence
          Length = 185953

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 236    caagacaacagagataccca 255
              ||||||||||||||||||||
Sbjct: 121489 caagacaacagagataccca 121508

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>emb|BX842590.1| Rhesus DNA sequence from clone bRH-178N19, complete sequence
          Length = 114431

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 344   atgaatcataaatttccaaattaa 367
             ||||||||||||||||||| ||||
Sbjct: 57665 atgaatcataaatttccaacttaa 57642

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>gb|AC144759.11| Medicago truncatula clone mth2-15b21, complete sequence
          Length = 124666

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 29    cattcttgttctcttggcat 48
             ||||||||||||||||||||
Sbjct: 83954 cattcttgttctcttggcat 83973

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>gb|AC123596.13| Medicago truncatula clone mth1-17n5, complete sequence
          Length = 120055

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 29    cattcttgttctcttggcat 48
             ||||||||||||||||||||
Sbjct: 81293 cattcttgttctcttggcat 81312

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>emb|AL109824.24|HSJ1181N3 Human DNA sequence from clone RP5-1181N3 on chromosome 20 Contains the
             C20orf110 gene for chromosome 20 open reading frame 110,
             the NCOA6 gene for the thyroid hormone receptor binding
             protein (KIAA0181), the 5' end of a novel gene and CpG
             islands, complete sequence
          Length = 92196

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 584   ccaagaagtttttccaaagt 603
             ||||||||||||||||||||
Sbjct: 34861 ccaagaagtttttccaaagt 34880

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>emb|BX883051.1| Rattus norvegicus chromosome 20, major histocompatibility complex,
             assembled from 40 BACs, strain Brown Norway (BN/ssNHsd),
             RT1n haplotype; segment 10/11
          Length = 348946

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 505   tattccaactccatggcatt 524
             ||||||||||||||||||||
Sbjct: 94805 tattccaactccatggcatt 94824

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>emb|AL662876.23| Mouse DNA sequence from clone RP23-288K19 on chromosome 11 Contains the
             5' end of a novel gene, a pseudogene similar to human
             polymerase (RNA) II (DNA directed) polypeptide D POLR2D,
             two novel genes, the Xbp1 gene for X-box binding protein
             1, the gene for a novel ankyrin repeat containing protein
             and three CpG islands, complete sequence
          Length = 232225

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 619   tgtgtgtgcccatccccatt 638
             ||||||||||||||||||||
Sbjct: 84308 tgtgtgtgcccatccccatt 84289

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>emb|AL009226.1|MU11KLT Mus musculus DNA sequence from clone 11KLT on chromosome 17. Contains
            mouse RING3 gene, CpG Island
          Length = 11493

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 452  tttagcttgactttactcaa 471
            ||||||||||||||||||||
Sbjct: 9626 tttagcttgactttactcaa 9607

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>emb|AL646093.9| Mouse DNA sequence from clone RP23-55I2 on chromosome 11 Contains the
            Kcnj12 gene for potassium inwardly-rectifying channel
            subfamily J member 12, a ribosomal protein L27a (Rpl27a)
            pseudogene, the Tnfrsf13b gene for tumor necrosis factor
            receptor superfamily member 13b, the Usp22 gene for
            ubiquitin specific protease 22, a ribosomal protein S13
            (Rps13) pseudogene, the Aldh3a1 gene for aldehyde
            dehydrogenase family 3 subfamily A1, the 3' end of one
            variant of the Aldh3a2 gene for aldehyde dehydrogenase
            family 3 subfamily A2 and three CpG islands, complete
            sequence
          Length = 241400

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 240  acaacagagatacccacaaattca 263
            |||||||||||||||||| |||||
Sbjct: 7401 acaacagagatacccacacattca 7378

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>gb|AC103409.2| Homo sapiens chromosome 8, clone RP11-1107H4, complete sequence
          Length = 210230

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 134    ttatatttgcaaattgcaat 153
              ||||||||||||||||||||
Sbjct: 144998 ttatatttgcaaattgcaat 144979

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>gb|AF361594.1| Arabidopsis thaliana At1g21550/F24J8_7 mRNA, complete cds
          Length = 777

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 137 tatttgcaaattgcaatcac 156
           ||||||||||||||||||||
Sbjct: 616 tatttgcaaattgcaatcac 635

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>gb|AC099049.2| Homo sapiens chromosome 3 clone RP11-291P10, complete sequence
          Length = 180339

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 486    agacatcctaataagtacat 505
              ||||||||||||||||||||
Sbjct: 155250 agacatcctaataagtacat 155231

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>gb|AC096627.28| Mus musculus strain C57BL/6J clone rp23-77b23 map 11, complete sequence
          Length = 264908

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 240    acaacagagatacccacaaattca 263
              |||||||||||||||||| |||||
Sbjct: 184867 acaacagagatacccacacattca 184844

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>gb|AC159898.2| Mus musculus BAC clone RP23-254N11 from chromosome 16, complete
             sequence
          Length = 191677

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 168   atatacacatatggattacatcca 191
             |||||||| |||||||||||||||
Sbjct: 25076 atatacacgtatggattacatcca 25053

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>gb|AC162378.2| Mus musculus BAC clone RP24-82K1 from chromosome 16, complete sequence
          Length = 210112

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 168   atatacacatatggattacatcca 191
             |||||||| |||||||||||||||
Sbjct: 23478 atatacacgtatggattacatcca 23501

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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 325     gccacacgcatattcttcta 344
               ||||||||||||||||||||
Sbjct: 2794399 gccacacgcatattcttcta 2794418

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>emb|AL954637.6| Zebrafish DNA sequence from clone DKEY-149G8 in linkage group 6,
           complete sequence
          Length = 161867

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 126 aaagacttttatatttgcaa 145
           ||||||||||||||||||||
Sbjct: 556 aaagacttttatatttgcaa 575

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>gb|AC015447.8|AC015447 Arabidopsis thaliana chromosome I BAC F24J8 genomic sequence, complete
             sequence
          Length = 108365

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 137   tatttgcaaattgcaatcac 156
             ||||||||||||||||||||
Sbjct: 81297 tatttgcaaattgcaatcac 81278

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>dbj|AP006533.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0085L11
          Length = 148142

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 325   gccacacgcatattcttcta 344
             ||||||||||||||||||||
Sbjct: 37880 gccacacgcatattcttcta 37899

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>gb|AC131238.3| Homo sapiens 12 BAC RP11-136L23 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 60500

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 165   ctgatatacacatatggatt 184
             ||||||||||||||||||||
Sbjct: 51435 ctgatatacacatatggatt 51416

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>emb|AL121809.6|CNS01DSK Human chromosome 14 DNA sequence BAC C-3028N15 of library CalTech-D from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 213442

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 589    aagtttttccaaagtgacaccatt 612
              |||||||||||||||| |||||||
Sbjct: 196969 aagtttttccaaagtgccaccatt 196946

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>gb|AC004701.1|AC004701 Homo sapiens chromosome 4 clone B331M8 map 4q25, complete sequence
          Length = 143839

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 118   aaaaatgcaaagacttttat 137
             ||||||||||||||||||||
Sbjct: 96279 aaaaatgcaaagacttttat 96260

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>dbj|AP000777.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-804A23, complete
             sequence
          Length = 197856

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 354   aatttccaaattaacatctt 373
             ||||||||||||||||||||
Sbjct: 39987 aatttccaaattaacatctt 40006

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>emb|AL929533.12| Zebrafish DNA sequence from clone DKEY-18E17 in linkage group 5, complete
              sequence
          Length = 251370

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 606    caccattctcacttgtgtgt 625
              ||||||||||||||||||||
Sbjct: 166333 caccattctcacttgtgtgt 166352

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>gb|AF100956.1|AF100956 Mus musculus major histocompatibility locus class II region; Fas-binding
              protein Daxx (DAXX) gene, partial cds; Bing1 (BING1),
              tapasin (tapasin), RalGDS-like factor (RLF), KE2 (KE2),
              BING4 (BING4), beta1, 3-galactosyl transferase
              (beta1,3-galactosyl transferase), ribosomal protein subunit
              S18 (RPS18), Sacm21 (Sacm21), H2K1(b) (H2-K1(b)), RING1
              (RING1), KE6a (KE6a), KE4 (KE4), RXRbeta (RXRbeta),
              collagen alpha-2 (XI) (COLA11A2), H2-O alpha (H2-Oalpha),
              RING3 (RING3), H2-M alpha (H2-M alpha), H2-M beta 2 (H2-M
              beta2), and H2-M beta1 (H2-M beta1) genes, complete cds;
              and LMP 2 gene, partial cds
          Length = 273800

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 452    tttagcttgactttactcaa 471
              ||||||||||||||||||||
Sbjct: 196816 tttagcttgactttactcaa 196835

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>gb|AE017332.1| Mycoplasma hyopneumoniae 232, complete genome
          Length = 892758

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 127    aagacttttatatttgcaaa 146
              ||||||||||||||||||||
Sbjct: 519901 aagacttttatatttgcaaa 519882

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>emb|CT025839.2| Medicago truncatula chromosome 5 clone mth4-19c21, COMPLETE SEQUENCE
          Length = 210117

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 29    cattcttgttctcttggcat 48
             ||||||||||||||||||||
Sbjct: 83957 cattcttgttctcttggcat 83976

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>emb|CT025624.11| Mouse DNA sequence from clone RP24-212N20 on chromosome 14, complete
              sequence
          Length = 198113

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 513    ctccatggcattcctcatca 532
              ||||||||||||||||||||
Sbjct: 142713 ctccatggcattcctcatca 142732

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>gb|AC132105.3| Mus musculus BAC clone RP24-224B9 from 16, complete sequence
          Length = 160757

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 168    atatacacatatggattacatcca 191
              |||||||| |||||||||||||||
Sbjct: 111777 atatacacgtatggattacatcca 111754

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>emb|AL928811.8| Mouse DNA sequence from clone RP23-74P23 on chromosome 2, complete
              sequence
          Length = 222061

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 236    caagacaacagagataccca 255
              ||||||||||||||||||||
Sbjct: 200918 caagacaacagagataccca 200899

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>dbj|AP001986.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-68H20, complete
             sequence
          Length = 74996

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 354   aatttccaaattaacatctt 373
             ||||||||||||||||||||
Sbjct: 46587 aatttccaaattaacatctt 46606


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,756,689
Number of Sequences: 3902068
Number of extensions: 6756689
Number of successful extensions: 139617
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 139383
Number of HSP's gapped (non-prelim): 234
length of query: 645
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 622
effective length of database: 17,143,297,704
effective search space: 10663131171888
effective search space used: 10663131171888
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result