ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbags10i11 |
|---|---|
| Clone Library Name | barley_pub |
>PSD7_ARATH (O24412) Probable 26S proteasome non-ATPase regulatory subunit 7| (26S proteasome regulatory subunit rpn8) (MOV34 protein) Length = 308 Score = 279 bits (714), Expect = 5e-75 Identities = 142/156 (91%), Positives = 149/156 (95%) Frame = -1 Query: 666 ENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTTISTLATEVSSKLAALKGLDAR 487 ENATQKSQKVFVHV +EIAAHEVEEIGVEHLLRDVKDTTISTLATEV++KL ALKGLDAR Sbjct: 153 ENATQKSQKVFVHVSTEIAAHEVEEIGVEHLLRDVKDTTISTLATEVTAKLTALKGLDAR 212 Query: 486 LTEIRGYLDLVIEGKLPLNHEILYHLQDVFNLLPNLNVNELIKAFAVKTNDMMLVIYLSS 307 L EIR YLDLVIEGKLPLNHEILYHLQDVFNLLPNLNVNEL+KAF+VKTNDMMLVIYLSS Sbjct: 213 LREIRSYLDLVIEGKLPLNHEILYHLQDVFNLLPNLNVNELVKAFSVKTNDMMLVIYLSS 272 Query: 306 LIRSVIALHNLINNKMLNKEHEKAEDSKPAAIPTAA 199 LIRSVIALHNLINNK+LNKEHEKAEDSKP AIP + Sbjct: 273 LIRSVIALHNLINNKLLNKEHEKAEDSKPVAIPATS 308
>PSD7_HUMAN (P51665) 26S proteasome non-ATPase regulatory subunit 7 (26S| proteasome regulatory subunit rpn8) (26S proteasome regulatory subunit S12) (Proteasome subunit p40) (Mov34 protein homolog) Length = 324 Score = 181 bits (458), Expect = 2e-45 Identities = 83/139 (59%), Positives = 114/139 (82%) Frame = -1 Query: 648 SQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTTISTLATEVSSKLAALKGLDARLTEIRG 469 + K F HV SEI A E EE+GVEHLLRD+KDTT+ TL+ +++++ LKGL+++L +IR Sbjct: 151 TSKTFEHVTSEIGAEEAEEVGVEHLLRDIKDTTVGTLSQRITNQVHGLKGLNSKLLDIRS 210 Query: 468 YLDLVIEGKLPLNHEILYHLQDVFNLLPNLNVNELIKAFAVKTNDMMLVIYLSSLIRSVI 289 YL+ V GKLP+NH+I+Y LQDVFNLLP++++ E +KAF +KTND M+V+YL+SLIRSV+ Sbjct: 211 YLEKVATGKLPINHQIIYQLQDVFNLLPDVSLQEFVKAFYLKTNDQMVVVYLASLIRSVV 270 Query: 288 ALHNLINNKMLNKEHEKAE 232 ALHNLINNK+ N++ EK E Sbjct: 271 ALHNLINNKIANRDAEKKE 289
>PSD7_MOUSE (P26516) 26S proteasome non-ATPase regulatory subunit 7 (26S| proteasome regulatory subunit rpn8) (26S proteasome regulatory subunit S12) (Proteasome subunit p40) (Mov34 protein) Length = 321 Score = 180 bits (457), Expect = 3e-45 Identities = 83/139 (59%), Positives = 113/139 (81%) Frame = -1 Query: 648 SQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTTISTLATEVSSKLAALKGLDARLTEIRG 469 + K F HV SEI A E EE+GVEHLLRD+KDTT+ TL+ +++++ LKGL+++L +IR Sbjct: 151 TSKTFEHVTSEIGAEEAEEVGVEHLLRDIKDTTVGTLSQRITNQVHGLKGLNSKLLDIRS 210 Query: 468 YLDLVIEGKLPLNHEILYHLQDVFNLLPNLNVNELIKAFAVKTNDMMLVIYLSSLIRSVI 289 YL+ V GKLP+NH+I+Y LQDVFNLLP+ ++ E +KAF +KTND M+V+YL+SLIRSV+ Sbjct: 211 YLEKVASGKLPINHQIIYQLQDVFNLLPDASLQEFVKAFYLKTNDQMVVVYLASLIRSVV 270 Query: 288 ALHNLINNKMLNKEHEKAE 232 ALHNLINNK+ N++ EK E Sbjct: 271 ALHNLINNKIANRDAEKKE 289
>PSD7_DROME (P26270) 26S proteasome non-ATPase regulatory subunit 7 (26S| proteasome regulatory subunit rpn8) (26S proteasome regulatory subunit S12) (Proteasome subunit p40) (Proteasome subunit p39B) (Protein Mov34) Length = 337 Score = 169 bits (428), Expect = 7e-42 Identities = 79/145 (54%), Positives = 114/145 (78%), Gaps = 1/145 (0%) Frame = -1 Query: 648 SQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTTISTLATEVSSKLAALKGLDARLTEIRG 469 + K F HVPSEI A E EE+GVEHLLRD+KDTT+ +L+ +++++L LKGL+A+L +I+ Sbjct: 153 TSKTFEHVPSEIGAEEAEEVGVEHLLRDIKDTTVGSLSQKITNQLMGLKGLNAQLRDIKQ 212 Query: 468 YLDLVIEGKLPLNHEILYHLQDVFNLLPNLNVNELIKAFAVKTNDMMLVIYLSSLIRSVI 289 YL V + K+P+NH+I+Y LQD+FNLLP++ ++ VKTND MLV+YL+S++RS+I Sbjct: 213 YLQRVGDSKMPINHQIVYQLQDIFNLLPDITNDQFTGTMYVKTNDQMLVVYLASMVRSII 272 Query: 288 ALHNLINNKMLNKEHEKAE-DSKPA 217 ALHNLINNK+ N++ E+ + DSK A Sbjct: 273 ALHNLINNKLANRDAEEGKSDSKEA 297
>RPN8_NEUCR (Q8WZY4) 26S proteasome regulatory subunit rpn-8| Length = 352 Score = 153 bits (386), Expect = 5e-37 Identities = 75/155 (48%), Positives = 109/155 (70%), Gaps = 13/155 (8%) Frame = -1 Query: 648 SQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTTISTLATEVSSKLAALKGLDARLTEIRG 469 + K FVH PS I A E EEIGVEHLLRD++D + TL+T +++++ +L+GL RL +I+ Sbjct: 159 TSKTFVHTPSIIEAEEAEEIGVEHLLRDIRDVAVGTLSTRITNQMRSLQGLHHRLRDIQA 218 Query: 468 YLDLVIEGKLPLNHEILYHLQDVFNLLPNLNV-------------NELIKAFAVKTNDMM 328 YL V++G+LP+NH IL +LQDVFNLLPNL+ +EL A ++KTND + Sbjct: 219 YLQKVLDGQLPVNHAILGNLQDVFNLLPNLSTPKSGPGATGTNADSELNHAMSIKTNDQL 278 Query: 327 LVIYLSSLIRSVIALHNLINNKMLNKEHEKAEDSK 223 + IYLSSLIR++ A H+LI NK+ N++ ++ D+K Sbjct: 279 MAIYLSSLIRAITAFHDLIENKIQNRQQQEENDAK 313
>RPN8_SCHPO (O74440) 26S proteasome regulatory subunit rpn8| Length = 324 Score = 145 bits (365), Expect = 1e-34 Identities = 76/159 (47%), Positives = 108/159 (67%), Gaps = 10/159 (6%) Frame = -1 Query: 666 ENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTTISTLATEVSSKLAALKGLDAR 487 E+ KS + FVH+PS I A E EEIGVEHLLRD +D ++ TLAT V+ + +L+GL R Sbjct: 152 EDDGSKSSRTFVHLPSSIEAEEAEEIGVEHLLRDTRDASVGTLATRVTQQAQSLQGLGQR 211 Query: 486 LTEIRGYLDLVIEGKLPLNHEILYHLQDVFNLLPNLNVNELI----------KAFAVKTN 337 LTEI YL V++G+LP+NH IL LQ VFNLLPN+ ++ +AF V +N Sbjct: 212 LTEIADYLRKVVDGQLPINHAILAELQSVFNLLPNIFSGPVVSEQALESEAQRAFNVNSN 271 Query: 336 DMMLVIYLSSLIRSVIALHNLINNKMLNKEHEKAEDSKP 220 D ++ IY+SS++R+VIALH+L+++ +K E+ +D KP Sbjct: 272 DQLMSIYISSIVRAVIALHDLLDSLAASKAMEQ-QDIKP 309
>RPN8_ASHGO (Q75F44) 26S proteasome regulatory subunit RPN8| Length = 326 Score = 137 bits (346), Expect = 2e-32 Identities = 76/161 (47%), Positives = 106/161 (65%), Gaps = 18/161 (11%) Frame = -1 Query: 648 SQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTTISTLATEVSSKLAALKGLDARLTEIRG 469 +++ FVH+P+ I A E EEIGVEHLLRDV+D L+ ++++L +L+GL +L +I Sbjct: 150 TERTFVHLPTAIEAEEAEEIGVEHLLRDVRDQAAGNLSLRLTNQLKSLQGLQRKLRDIVA 209 Query: 468 YLDLVIEGKLPLNHEILYHLQDVFNLLPNL-----------------NVNELIKAFAVKT 340 YLD V G+LP NH IL LQDVFNLLPNL + N L KA VKT Sbjct: 210 YLDKVNSGQLPANHIILGKLQDVFNLLPNLGSPDEEAPATKKDDVLASSNTLQKALTVKT 269 Query: 339 NDMMLVIYLSSLIRSVIALHNLINNKMLNKEHEKAE-DSKP 220 ND ++VIY+S+L+R++IA NLI NK+ NK+ ++A+ D +P Sbjct: 270 NDELMVIYISNLMRAIIAFDNLIENKIKNKKLQEAKRDPEP 310
>RPN8_YEAST (Q08723) 26S proteasome regulatory subunit RPN8| Length = 337 Score = 137 bits (345), Expect = 3e-32 Identities = 73/151 (48%), Positives = 99/151 (65%), Gaps = 17/151 (11%) Frame = -1 Query: 648 SQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTTISTLATEVSSKLAALKGLDARLTEIRG 469 ++K F+H+P I A E EEIGVEHLLRDV+D L+ ++++L +LKGL ++L ++ Sbjct: 149 TEKTFLHLPCTIEAEEAEEIGVEHLLRDVRDQAAGGLSIRLTNQLKSLKGLQSKLKDVVE 208 Query: 468 YLDLVIEGKLPLNHEILYHLQDVFNLLPNLNV-----------------NELIKAFAVKT 340 YLD VI +LP+NH IL LQDVFNLLPNL N L KA VKT Sbjct: 209 YLDKVINKELPINHTILGKLQDVFNLLPNLGTPDDDEIDVENHDRINISNNLQKALTVKT 268 Query: 339 NDMMLVIYLSSLIRSVIALHNLINNKMLNKE 247 ND ++VIY+S+L+RS+IA +LI NK+ NK+ Sbjct: 269 NDELMVIYISNLVRSIIAFDDLIENKIQNKK 299
>RPN8_CANGA (Q6FMD8) 26S proteasome regulatory subunit RPN8| Length = 329 Score = 134 bits (338), Expect = 2e-31 Identities = 71/159 (44%), Positives = 103/159 (64%), Gaps = 17/159 (10%) Frame = -1 Query: 648 SQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTTISTLATEVSSKLAALKGLDARLTEIRG 469 ++K F+H+P + A E EEIGVEHLLRDV+D L+ ++++L +LKGL +L +I Sbjct: 150 TEKTFLHLPCTVEAEEAEEIGVEHLLRDVRDQAAGGLSIRLTNQLKSLKGLQKKLNDIVI 209 Query: 468 YLDLVIEGKLPLNHEILYHLQDVFNLLPNLNVNE-----------------LIKAFAVKT 340 YL+ VI +LP+NH IL LQDVFNLLPNL NE L +A VKT Sbjct: 210 YLNKVINNELPVNHTILGKLQDVFNLLPNLGYNEETDVSATSNDMVTASNNLQRALTVKT 269 Query: 339 NDMMLVIYLSSLIRSVIALHNLINNKMLNKEHEKAEDSK 223 ND ++VIY+++L+R++IA +LI NKM NK+ ++ + + Sbjct: 270 NDELMVIYITNLVRAIIAFDDLIENKMQNKKLQEERNKE 308
>CSN6_DROME (Q9VCY3) COP9 signalosome complex subunit 6 (Signalosome subunit 6)| (Dch6) Length = 341 Score = 57.8 bits (138), Expect = 3e-08 Identities = 37/126 (29%), Positives = 66/126 (52%), Gaps = 2/126 (1%) Frame = -1 Query: 639 VFVHVPSEIAAHEVEEIGVEHLLRDVKDTT--ISTLATEVSSKLAALKGLDARLTEIRGY 466 +FV + +A E E IGV+H+ R + + S +A + ++ +A+K L+ R+ + Y Sbjct: 196 LFVPLTYTLATEEAERIGVDHVARMTSNESGEKSVVAEHLVAQDSAIKMLNTRIKIVLQY 255 Query: 465 LDLVIEGKLPLNHEILYHLQDVFNLLPNLNVNELIKAFAVKTNDMMLVIYLSSLIRSVIA 286 + V GKL N EIL + + LP + V + F + ND+ L+ YL +L + Sbjct: 256 IRDVEAGKLRANQEILREAYALCHRLPVMQVPAFQEEFYTQCNDVGLISYLGTLTKGCND 315 Query: 285 LHNLIN 268 +H+ +N Sbjct: 316 MHHFVN 321
>CSN6_MOUSE (O88545) COP9 signalosome complex subunit 6 (Signalosome subunit 6)| (SGN6) (JAB1-containing signalosome subunit 6) Length = 324 Score = 57.0 bits (136), Expect = 5e-08 Identities = 35/126 (27%), Positives = 67/126 (53%), Gaps = 2/126 (1%) Frame = -1 Query: 639 VFVHVPSEIAAHEVEEIGVEHLLRDVKDTT--ISTLATEVSSKLAALKGLDARLTEIRGY 466 +F + +A E E IGV+H+ R + ST+A + ++ +A+K L +R+ I Y Sbjct: 179 LFAELTYTLATEEAERIGVDHVARMTATGSGENSTVAEHLIAQHSAIKMLHSRVKLILEY 238 Query: 465 LDLVIEGKLPLNHEILYHLQDVFNLLPNLNVNELIKAFAVKTNDMMLVIYLSSLIRSVIA 286 + G++P NHEIL + + LP L+ ++ F + ND+ L+ YL ++ ++ Sbjct: 239 VKASEAGEVPFNHEILREAYALCHCLPVLSTDKFKTDFYDQCNDVGLMAYLGTITKTCNT 298 Query: 285 LHNLIN 268 ++ +N Sbjct: 299 MNQFVN 304
>CSN6_HUMAN (Q7L5N1) COP9 signalosome complex subunit 6 (Signalosome subunit 6)| (SGN6) (JAB1-containing signalosome subunit 6) (Vpr-interacting protein) (hVIP) (MOV34 homolog) Length = 327 Score = 57.0 bits (136), Expect = 5e-08 Identities = 35/126 (27%), Positives = 67/126 (53%), Gaps = 2/126 (1%) Frame = -1 Query: 639 VFVHVPSEIAAHEVEEIGVEHLLRDVKDTT--ISTLATEVSSKLAALKGLDARLTEIRGY 466 +F + +A E E IGV+H+ R + ST+A + ++ +A+K L +R+ I Y Sbjct: 182 LFAELTYTLATEEAERIGVDHVARMTATGSGENSTVAEHLIAQHSAIKMLHSRVKLILEY 241 Query: 465 LDLVIEGKLPLNHEILYHLQDVFNLLPNLNVNELIKAFAVKTNDMMLVIYLSSLIRSVIA 286 + G++P NHEIL + + LP L+ ++ F + ND+ L+ YL ++ ++ Sbjct: 242 VKASEAGEVPFNHEILREAYALCHCLPVLSTDKFKTDFYDQCNDVGLMAYLGTITKTCNT 301 Query: 285 LHNLIN 268 ++ +N Sbjct: 302 MNQFVN 307
>CSN6_XENLA (Q6NUC2) COP9 signalosome complex subunit 6 (Signalosome subunit 6)| Length = 318 Score = 55.5 bits (132), Expect = 1e-07 Identities = 34/118 (28%), Positives = 64/118 (54%), Gaps = 2/118 (1%) Frame = -1 Query: 615 IAAHEVEEIGVEHLLRDVKDTT--ISTLATEVSSKLAALKGLDARLTEIRGYLDLVIEGK 442 +A E E IGV+H+ R + ST+A + ++ +A+K L +R+ I Y+ G+ Sbjct: 181 LATEEAERIGVDHVARMTATGSGENSTVAEHLIAQHSAIKMLHSRVRLILEYVRAAEGGE 240 Query: 441 LPLNHEILYHLQDVFNLLPNLNVNELIKAFAVKTNDMMLVIYLSSLIRSVIALHNLIN 268 +P NHEIL + + LP L+ ++ F + ND+ L+ YL ++ ++ ++ +N Sbjct: 241 VPFNHEILREASALCHCLPVLSTDKFKTDFYDQCNDVGLMSYLGTITKTCNTMNQFVN 298
>CSN6B_ARATH (Q8W1P0) COP9 signalosome complex subunit 6b (Signalosome subunit| 6b) (AtCSN6b) Length = 317 Score = 47.4 bits (111), Expect = 4e-05 Identities = 29/130 (22%), Positives = 66/130 (50%), Gaps = 4/130 (3%) Frame = -1 Query: 645 QKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTTISTLATEVSSKL----AALKGLDARLTE 478 Q +FVH I E E I V+H+ +K + + AT++++ L +A+K L++R+ Sbjct: 170 QSIFVHTSYTIETVEAERISVDHVAH-LKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRV 228 Query: 477 IRGYLDLVIEGKLPLNHEILYHLQDVFNLLPNLNVNELIKAFAVKTNDMMLVIYLSSLIR 298 + ++ + +G P + +L + + LP + + F ++ ND +L+ YL+ + Sbjct: 229 LYQHIVAMQKGDKPCENSVLRQVSSLLRSLPAAESEKFNENFLMEYNDKLLMSYLAMITN 288 Query: 297 SVIALHNLIN 268 ++ +++ Sbjct: 289 CTSNMNEVVD 298
>IF35_MOUSE (Q9DCH4) Eukaryotic translation initiation factor 3 subunit 5| (eIF-3 epsilon) (eIF3 p47 subunit) (eIF3f) Length = 361 Score = 43.5 bits (101), Expect = 6e-04 Identities = 34/133 (25%), Positives = 65/133 (48%), Gaps = 4/133 (3%) Frame = -1 Query: 639 VFVHVPSEIAAHEVEEIGVEHLLRDVKDTTISTLATEVSSKLAALKGLDAR----LTEIR 472 +F + + A ++ E IGV+ ++ K +SS L + G AR L+ + Sbjct: 235 MFTPLTVKYAYYDTERIGVDLIM---KTCFSPNRVIGLSSDLQQVGGASARIQDALSTVL 291 Query: 471 GYLDLVIEGKLPLNHEILYHLQDVFNLLPNLNVNELIKAFAVKTNDMMLVIYLSSLIRSV 292 Y + V+ GK+ ++ + L + N +P + ++ ND+++V YL++L +S Sbjct: 292 QYAEDVLSGKVSADNTVGRFLMSLVNQVPKIVPDDFETMLNSNINDLLMVTYLANLTQSQ 351 Query: 291 IALHNLINNKMLN 253 IAL N K++N Sbjct: 352 IAL----NEKLVN 360
>IF35_HUMAN (O00303) Eukaryotic translation initiation factor 3 subunit 5| (eIF-3 epsilon) (eIF3 p47 subunit) (eIF3f) Length = 357 Score = 43.5 bits (101), Expect = 6e-04 Identities = 34/133 (25%), Positives = 65/133 (48%), Gaps = 4/133 (3%) Frame = -1 Query: 639 VFVHVPSEIAAHEVEEIGVEHLLRDVKDTTISTLATEVSSKLAALKGLDAR----LTEIR 472 +F + + A ++ E IGV+ ++ K +SS L + G AR L+ + Sbjct: 231 MFTPLTVKYAYYDTERIGVDLIM---KTCFSPNRVIGLSSDLQQVGGASARIQDALSTVL 287 Query: 471 GYLDLVIEGKLPLNHEILYHLQDVFNLLPNLNVNELIKAFAVKTNDMMLVIYLSSLIRSV 292 Y + V+ GK+ ++ + L + N +P + ++ ND+++V YL++L +S Sbjct: 288 QYAEDVLSGKVSADNTVGRFLMSLVNQVPKIVPDDFETMLNSNINDLLMVTYLANLTQSQ 347 Query: 291 IALHNLINNKMLN 253 IAL N K++N Sbjct: 348 IAL----NEKLVN 356
>CSN6A_ARATH (Q8W206) COP9 signalosome complex subunit 6a (Signalosome subunit| 6a) (AtCSN6a) Length = 317 Score = 42.7 bits (99), Expect = 0.001 Identities = 28/130 (21%), Positives = 63/130 (48%), Gaps = 4/130 (3%) Frame = -1 Query: 645 QKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTTISTLATEVSSKL----AALKGLDARLTE 478 Q +F H I E E I V+H+ +K + + AT++++ L +A+K L++R+ Sbjct: 170 QLIFAHTSYTIETVEAERISVDHVAH-LKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRV 228 Query: 477 IRGYLDLVIEGKLPLNHEILYHLQDVFNLLPNLNVNELIKAFAVKTNDMMLVIYLSSLIR 298 + L + +G ++ +L + + LP + F ++ ND +L+ YL+ + Sbjct: 229 LYQNLAAMQKGDKSCDNSVLRQVSSLLRRLPAMESERFQDNFLMEYNDKLLITYLAMITN 288 Query: 297 SVIALHNLIN 268 ++ +++ Sbjct: 289 CSSNMNEMVD 298
>HISZ_LEPIN (Q8F737) ATP phosphoribosyltransferase regulatory subunit| Length = 344 Score = 42.0 bits (97), Expect = 0.002 Identities = 41/136 (30%), Positives = 68/136 (50%), Gaps = 6/136 (4%) Frame = -1 Query: 615 IAAHEVEEIGVEHLLRDVKDTTISTLATEVSSKLAALKGLDARLTEIRGYLDL----VIE 448 +A E+ +IG E + K+ T L E ++ +L L+ +LT + G ++L V E Sbjct: 123 VARKEILQIGAESIGVSGKENTFKIL--EELDEIISLLPLENKLTLVLGNVNLFQSIVQE 180 Query: 447 GKLPLNHEILYHLQDVFNLLPNLNVNELIKAFAVKTNDMMLVIYLSSLIRS--VIALHNL 274 +L N ++ + LL NVNE+ K F K N L+ LSSL+ + + +L N Sbjct: 181 FELKQNE-----IEILSKLLYQKNVNEIQKIFGEKKNHTDLIRLLSSLVLNFDLNSLKNS 235 Query: 273 INNKMLNKEHEKAEDS 226 +N L+K +K+ S Sbjct: 236 LNINSLSKNLQKSLSS 251
>HISZ_LEPIC (P62359) ATP phosphoribosyltransferase regulatory subunit| Length = 344 Score = 42.0 bits (97), Expect = 0.002 Identities = 41/136 (30%), Positives = 68/136 (50%), Gaps = 6/136 (4%) Frame = -1 Query: 615 IAAHEVEEIGVEHLLRDVKDTTISTLATEVSSKLAALKGLDARLTEIRGYLDL----VIE 448 +A E+ +IG E + K+ T L E ++ +L L+ +LT + G ++L V E Sbjct: 123 VARKEILQIGAESIGVSGKENTFKIL--EELDEIISLLPLENKLTLVLGNVNLFQSIVQE 180 Query: 447 GKLPLNHEILYHLQDVFNLLPNLNVNELIKAFAVKTNDMMLVIYLSSLIRS--VIALHNL 274 +L N ++ + LL NVNE+ K F K N L+ LSSL+ + + +L N Sbjct: 181 FELKQNE-----IEILSKLLYQKNVNEIQKIFGEKKNHTDLIRLLSSLVLNFDLNSLKNS 235 Query: 273 INNKMLNKEHEKAEDS 226 +N L+K +K+ S Sbjct: 236 LNINSLSKNLQKSLSS 251
>AMDM_YEAST (P15274) AMP deaminase (EC 3.5.4.6) (Myoadenylate deaminase)| Length = 810 Score = 35.0 bits (79), Expect = 0.20 Identities = 39/136 (28%), Positives = 61/136 (44%), Gaps = 2/136 (1%) Frame = -1 Query: 645 QKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTTISTLATEVSSKLAALKGLDA--RLTEIR 472 +KV HV H + +HLLR +K + +V + L LD R + Sbjct: 357 RKVDTHV------HHSACMNQKHLLRFIKHKLRHSKDEKVIFRDGKLLTLDEVFRSLHLT 410 Query: 471 GYLDLVIEGKLPLNHEILYHLQDVFNLLPNLNVNELIKAFAVKTNDMMLVIYLSSLIRSV 292 GY DL I+ H+ +H D FNL N ++ +KTN+ + YL+ + + V Sbjct: 411 GY-DLSIDTLDMHAHKDTFHRFDKFNLKYNPIGESRLREIFLKTNNYIKGTYLADITKQV 469 Query: 291 IALHNLINNKMLNKEH 244 I +L N+K N E+ Sbjct: 470 I--FDLENSKYQNCEY 483
>ATC1_YEAST (P13586) Calcium-transporting ATPase 1 (EC 3.6.3.8) (Golgi| Ca(2+)-ATPase) Length = 950 Score = 33.9 bits (76), Expect = 0.45 Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 5/97 (5%) Frame = -1 Query: 519 KLAALKGLDARLTEIR--GYLDLVIE---GKLPLNHEILYHLQDVFNLLPNLNVNELIKA 355 ++A K + RL + G ++++ G L NH + L + ++ LNV L K Sbjct: 345 RMAKRKAIVRRLPSVETLGSVNVICSDKTGTLTSNHMTVSKLWCLDSMSNKLNVLSLDKN 404 Query: 354 FAVKTNDMMLVIYLSSLIRSVIALHNLINNKMLNKEH 244 K ++ L YL+ +R + + NL NN ++EH Sbjct: 405 KKTKNSNGNLKNYLTEDVRETLTIGNLCNNASFSQEH 441
>RPOB_BLOFL (Q7VRP7) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1342 Score = 30.0 bits (66), Expect = 6.5 Identities = 14/34 (41%), Positives = 24/34 (70%), Gaps = 2/34 (5%) Frame = +1 Query: 361 NELIYVEIGEQI--KHILQVVQNLVVQWELPFNY 456 N++IYVE G +I KHI ++ + +++ E+P NY Sbjct: 259 NDIIYVERGRRITSKHINKLKADNIIKVEVPLNY 292 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 88,354,678 Number of Sequences: 219361 Number of extensions: 1754857 Number of successful extensions: 4686 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 4548 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4680 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6427774254 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
