Clone Information

BLAST Search Result

Clone Name	rbags10h12
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	emb\|X82937.1\|HVRNAJIP H.vulgare mRNA for jasmonate induced protein	394	e-106
2	emb\|AL121999.18\|HSJ543J13 Human DNA sequence from clone RP4-543J...	44	0.61
3	emb\|AL928617.13\| Mouse DNA sequence from clone RP23-326E21 on ch...	44	0.61
4	gb\|AC008200.5\| Drosophila melanogaster clone BACR17P04, complete...	42	2.4
5	gb\|AC008365.4\| Drosophila melanogaster clone BACR03N12, complete...	42	2.4
6	gb\|AC101800.8\| Mus musculus chromosome 1, clone RP24-219K10, com...	42	2.4
7	gb\|AC137108.12\| Mus musculus chromosome 9, clone RP23-277J20, co...	42	2.4
8	emb\|Z11840.1\|DMHDGHOGD D.melanogaster hedgehog gene DNA	42	2.4
9	gb\|AC123852.4\| Mus musculus BAC clone RP23-326G23 from chromosom...	42	2.4
10	emb\|AL645696.30\| Mouse DNA sequence from clone RP23-429E18 on ch...	42	2.4
11	gb\|AC157950.2\| Mus musculus BAC clone RP23-128A23 from chromosom...	42	2.4
12	gb\|AC154002.8\| Mus musculus 6 BAC RP24-239G21 (Roswell Park Canc...	42	2.4
13	gb\|AC092855.39\| Mus musculus strain C57BL/6J chromosome 3 clone ...	42	2.4
14	gb\|AE003742.4\| Drosophila melanogaster chromosome 3R, section 80...	42	2.4
15	dbj\|AP006374.1\| Lotus japonicus genomic DNA, chromosome 5, clone...	42	2.4
16	emb\|AL627257.9\| Mouse DNA sequence from clone RP23-3L4 on chromo...	42	2.4
17	emb\|AL645471.8\| Mouse DNA sequence from clone RP23-456M3 on chro...	42	2.4
18	emb\|AL670175.12\| Mouse DNA sequence from clone RP23-309K20 on ch...	42	2.4
19	ref\|XM_479497.1\| Oryza sativa (japonica cultivar-group), mRNA	40	9.5
20	ref\|XM_513270.1\| PREDICTED: Pan troglodytes similar to alpha 1 t...	40	9.5
21	gb\|AC102440.12\| Mus musculus chromosome 1, clone RP24-146C18, co...	40	9.5
22	gb\|AC122669.6\| Rattus norvegicus 4 BAC CH230-172C22 (Children's ...	40	9.5
23	ref\|XM_875562.1\| PREDICTED: Bos taurus similar to ATP-binding ca...	40	9.5
24	ref\|XM_865176.1\| PREDICTED: Bos taurus similar to ATP-binding ca...	40	9.5
25	gb\|AC125321.4\| Mus musculus BAC clone RP23-371B13 from chromosom...	40	9.5
26	gb\|AC122447.4\| Mus musculus BAC clone RP24-240O5 from chromosome...	40	9.5
27	emb\|Z81581.1\|CET02E1 Caenorhabditis elegans Cosmid T02E1, comple...	40	9.5
28	emb\|AL354794.16\| Human DNA sequence from clone RP11-203L2 on chr...	40	9.5
29	emb\|AL354694.18\| Human DNA sequence from clone RP11-77E14 on chr...	40	9.5
30	emb\|AL031782.1\|HS708F5 Human DNA sequence from clone RP4-708F5 o...	40	9.5
31	emb\|Z47746.1\|SC8557 S.cerevisiae chromosome IV cosmid 8557	40	9.5
32	emb\|AJ508355.1\|BMA508355 Brugia malayi ORF1, ORF2, ORF3 and ORF4...	40	9.5
33	gb\|AC121541.31\| Mus musculus chromosome 5, clone RP24-132B11, co...	40	9.5
34	gb\|AC010069.9\| Drosophila melanogaster 3L BAC RP98-17C18 (Roswel...	40	9.5
35	gb\|AC116662.1\| Rattus norvegicus, clone RP31-256A2, complete seq...	40	9.5
36	gb\|AF438327.1\| Homo sapiens alpha 1 type XXI collagen precursor ...	40	9.5
37	gb\|AC091742.5\| Homo sapiens BAC clone RP11-1220K2 from 7, comple...	40	9.5
38	gb\|AC091614.3\| Homo sapiens chromosome 1 clone RP4-665J23, compl...	40	9.5
39	emb\|BX897687.7\| Zebrafish DNA sequence from clone DKEY-151O8, co...	40	9.5
40	ref\|NM_001026692.2\| Caenorhabditis elegans human KRIT 1 (Krev in...	40	9.5
41	dbj\|AP008213.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	9.5
42	gb\|AC068790.36\| Homo sapiens 12 BAC RP11-214K3 (Roswell Park Can...	40	9.5
43	gb\|AC007278.4\| Homo sapiens BAC clone RP11-308G20 from 2, comple...	40	9.5
44	gb\|AC005037.2\| Homo sapiens BAC clone RP11-469M7 from 2, complet...	40	9.5
45	dbj\|AP006268.4\| Oryza sativa (japonica cultivar-group) genomic D...	40	9.5
46	dbj\|AP004343.2\| Oryza sativa (japonica cultivar-group) genomic D...	40	9.5
47	gb\|AC144691.3\| Didelphis virginiana clone LB3-241H11, complete s...	40	9.5
48	dbj\|AK101251.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	40	9.5
49	gb\|AE003524.5\| Drosophila melanogaster chromosome 3L, section 61...	40	9.5
50	gb\|AC015583.34\| Mus musculus chromosome 6, clone RP23-329P9, com...	40	9.5
51	gb\|AC091106.17\| Mus musculus chromosome 6, clone RP23-103L13, co...	40	9.5
52	emb\|CT027681.7\| Mouse DNA sequence from clone RP24-330H24 on chr...	40	9.5
53	gb\|DP000023.1\| Didelphis virginiana target 1 genomic scaffold	40	9.5

>emb|X82937.1|HVRNAJIP H.vulgare mRNA for jasmonate induced protein
          Length = 1334

 Score =  394 bits (199), Expect = e-106
 Identities = 397/463 (85%)
 Strand = Plus / Minus

                                                                       
Query: 221 cgacttttcccaaatcttcaaatgagtaagtcaccatggggtttccatgtccacttcccg 280
           |||||||||||||| |||||||||||||||||||||  |  ||||| |||||   | |||
Sbjct: 753 cgacttttcccaaagcttcaaatgagtaagtcaccacagattttccttgtcccgcttccg 694

                                                                       
Query: 281 caataatattgtcatatgcctttaacttttgagtatcatccaaggttttaaaagcccccc 340
           ||||||||||||||||| ||| || ||||||  ||||||||||| |||| ||||||||||
Sbjct: 693 caataatattgtcatatacctgtagcttttggatatcatccaagtttttgaaagcccccc 634

                                                                       
Query: 341 tcaaaccaggcttggcggtatcatctgccaccagatcctgaaacttgattttgttaccct 400
           | |||||| |||| |   |||  |||  ||| ||||||| |||| ||||||||||  |||
Sbjct: 633 taaaaccaagctttgacatattttcttgcacaagatcctcaaacatgattttgttttcct 574

                                                                       
Query: 401 tgagccattctgagaattgatttggtataaaatgttcaaacttttcggcatcctcaagcg 460
           ||||||||| ||||||||||||||||  ||| |||| |||||||| ||||| ||| ||||
Sbjct: 573 tgagccattttgagaattgatttggtgcaaagtgttgaaactttttggcattctccagcg 514

                                                                       
Query: 461 cagctttcttatacctgccagcctcaagagcaaggcattgagcttccttctgttgagttg 520
             |||||||||||| ||||||||||||| |||||||  || || ||||||||||| || |
Sbjct: 513 tggctttcttatacatgccagcctcaagggcaaggcgctgggcctccttctgttgggtgg 454

                                                                       
Query: 521 ccggatcaagacactttagctgcttgatgagatcatcactgtgggtcttgaccttatcaa 580
           |  |||  ||  ||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct: 453 ctagattgaggaactttagctgcttgatgagatcatcactgtgggtcttgagcttgtcaa 394

                                                                       
Query: 581 ggtaggtgagacgggtgttgtaactacggatgaatttgagggatgttccgatggccttgg 640
           ||||||||||||||||||||||||| |||||||||| ||| ||| |||||||||||||||
Sbjct: 393 ggtaggtgagacgggtgttgtaactccggatgaattggagagatattccgatggccttgg 334

                                                      
Query: 641 tgcagtactcatggacatccttagcaatatcttgcttggtggc 683
           ||||||| |||| |||||||||  |||||||||||||||||||
Sbjct: 333 tgcagtagtcatagacatccttgccaatatcttgcttggtggc 291



 Score =  105 bits (53), Expect = 2e-19
 Identities = 92/105 (87%)
 Strand = Plus / Minus

                                                                        
Query: 109  gggtagttgtgcgtaacaaggcgagcgagttggagaccatcagtcataggagccacacga 168
            ||||| |||||| |||| || |||||||||| |||||||| || |||||| |||||||| 
Sbjct: 1138 gggtaattgtgcttaactagacgagcgagttcgagaccatgaggcataggcgccacacgg 1079

                                                         
Query: 169  caaccactaagcccgtctgttatattcaccttgctagttccactg 213
            ||| |  |||||||||||||||| |||||||||||||||||||||
Sbjct: 1078 caaactgtaagcccgtctgttatcttcaccttgctagttccactg 1034

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>emb|AL121999.18|HSJ543J13 Human DNA sequence from clone RP4-543J13 on chromosome 1p13.1-13.3
             Contains a novel gene, complete sequence
          Length = 137490

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 318   atccaaggttttaaaagcccccctca 343
             |||||||| |||||||||||||||||
Sbjct: 80442 atccaaggctttaaaagcccccctca 80417

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>emb|AL928617.13| Mouse DNA sequence from clone RP23-326E21 on chromosome 2, complete
              sequence
          Length = 190652

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 499    tgagcttccttctgttgagttg 520
              ||||||||||||||||||||||
Sbjct: 133371 tgagcttccttctgttgagttg 133392

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>gb|AC008200.5| Drosophila melanogaster clone BACR17P04, complete sequence
          Length = 163686

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 41    gcaacaacaacaaaagatagcagca 65
             ||||||||||||||||| |||||||
Sbjct: 99670 gcaacaacaacaaaagacagcagca 99694

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>gb|AC008365.4| Drosophila melanogaster clone BACR03N12, complete sequence
          Length = 166693

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 41  gcaacaacaacaaaagatagcagca 65
           ||||||||||||||||| |||||||
Sbjct: 692 gcaacaacaacaaaagacagcagca 716

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>gb|AC101800.8| Mus musculus chromosome 1, clone RP24-219K10, complete sequence
          Length = 177147

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 42    caacaacaacaaaagatagca 62
             |||||||||||||||||||||
Sbjct: 72653 caacaacaacaaaagatagca 72673

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>gb|AC137108.12| Mus musculus chromosome 9, clone RP23-277J20, complete sequence
          Length = 204108

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 501    agcttccttctgttgagttgc 521
              |||||||||||||||||||||
Sbjct: 195826 agcttccttctgttgagttgc 195846

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>emb|Z11840.1|DMHDGHOGD D.melanogaster hedgehog gene DNA
          Length = 19116

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 41    gcaacaacaacaaaagatagcagca 65
             ||||||||||||||||| |||||||
Sbjct: 13509 gcaacaacaacaaaagacagcagca 13485

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>gb|AC123852.4| Mus musculus BAC clone RP23-326G23 from chromosome 6, complete sequence
          Length = 195925

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 420   atttggtataaaatgttcaaa 440
             |||||||||||||||||||||
Sbjct: 29219 atttggtataaaatgttcaaa 29199

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>emb|AL645696.30| Mouse DNA sequence from clone RP23-429E18 on chromosome 1 Contains two
             novel genes, complete sequence
          Length = 159399

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 42    caacaacaacaaaagatagca 62
             |||||||||||||||||||||
Sbjct: 16030 caacaacaacaaaagatagca 16050

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>gb|AC157950.2| Mus musculus BAC clone RP23-128A23 from chromosome 9, complete
            sequence
          Length = 202301

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 501  agcttccttctgttgagttgc 521
            |||||||||||||||||||||
Sbjct: 1374 agcttccttctgttgagttgc 1394

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>gb|AC154002.8| Mus musculus 6 BAC RP24-239G21 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 188768

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 42    caacaacaacaaaagatagca 62
             |||||||||||||||||||||
Sbjct: 95712 caacaacaacaaaagatagca 95732

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>gb|AC092855.39| Mus musculus strain C57BL/6J chromosome 3 clone rp23-49o17, complete
              sequence
          Length = 249205

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 475    ctgccagcctcaagagcaagg 495
              |||||||||||||||||||||
Sbjct: 205389 ctgccagcctcaagagcaagg 205409

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>gb|AE003742.4| Drosophila melanogaster chromosome 3R, section 80 of 118 of the
             complete sequence
          Length = 233746

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 41    gcaacaacaacaaaagatagcagca 65
             ||||||||||||||||| |||||||
Sbjct: 17618 gcaacaacaacaaaagacagcagca 17642

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>dbj|AP006374.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT47L09, TM0218,
             complete sequence
          Length = 113213

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 27    tgcacaaagtggccgcaacaacaacaaaa 55
             |||||||||||||  ||||||||||||||
Sbjct: 94372 tgcacaaagtggcaacaacaacaacaaaa 94400

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>emb|AL627257.9| Mouse DNA sequence from clone RP23-3L4 on chromosome 4, complete sequence
          Length = 241053

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 526    tcaagacactttagctgcttg 546
              |||||||||||||||||||||
Sbjct: 232266 tcaagacactttagctgcttg 232246

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>emb|AL645471.8| Mouse DNA sequence from clone RP23-456M3 on chromosome 11, complete
             sequence
          Length = 178361

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 57    atagcagcagtagtagagtag 77
             |||||||||||||||||||||
Sbjct: 18566 atagcagcagtagtagagtag 18586

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>emb|AL670175.12| Mouse DNA sequence from clone RP23-309K20 on chromosome 4, complete
             sequence
          Length = 168158

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 526   tcaagacactttagctgcttg 546
             |||||||||||||||||||||
Sbjct: 14591 tcaagacactttagctgcttg 14571

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>ref|XM_479497.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2035

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 128 ggcgagcgagttggagacca 147
           ||||||||||||||||||||
Sbjct: 731 ggcgagcgagttggagacca 712

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>ref|XM_513270.1| PREDICTED: Pan troglodytes similar to alpha 1 type XVI collagen
            precursor; collagen XVI, alpha-1 polypeptide (LOC456702),
            mRNA
          Length = 4389

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 335  cccccctcaaaccaggcttg 354
            ||||||||||||||||||||
Sbjct: 3163 cccccctcaaaccaggcttg 3144

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>gb|AC102440.12| Mus musculus chromosome 1, clone RP24-146C18, complete sequence
          Length = 144770

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 42    caacaacaacaaaagatagc 61
             ||||||||||||||||||||
Sbjct: 51340 caacaacaacaaaagatagc 51321

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>gb|AC122669.6| Rattus norvegicus 4 BAC CH230-172C22 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 227955

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 42    caacaacaacaaaagatagc 61
             ||||||||||||||||||||
Sbjct: 18884 caacaacaacaaaagatagc 18903

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>ref|XM_875562.1| PREDICTED: Bos taurus similar to ATP-binding cassette, sub-family A,
            member 9 isoform a, transcript variant 5 (LOC504278),
            mRNA
          Length = 3523

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 645  gtactcatggacatccttagcaat 668
            ||||||||||||||| ||||||||
Sbjct: 3142 gtactcatggacatcattagcaat 3165

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>ref|XM_865176.1| PREDICTED: Bos taurus similar to ATP-binding cassette, sub-family A,
            member 9 isoform a, transcript variant 3 (LOC504278),
            mRNA
          Length = 4685

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 645  gtactcatggacatccttagcaat 668
            ||||||||||||||| ||||||||
Sbjct: 3142 gtactcatggacatcattagcaat 3165

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>gb|AC125321.4| Mus musculus BAC clone RP23-371B13 from chromosome 9, complete sequence
          Length = 196150

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 42    caacaacaacaaaagatagcagca 65
             ||||||||| ||||||||||||||
Sbjct: 41406 caacaacaaaaaaagatagcagca 41429

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>gb|AC122447.4| Mus musculus BAC clone RP24-240O5 from chromosome 9, complete
            sequence
          Length = 158058

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 42   caacaacaacaaaagatagcagca 65
            ||||||||| ||||||||||||||
Sbjct: 4411 caacaacaaaaaaagatagcagca 4388

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>emb|Z81581.1|CET02E1 Caenorhabditis elegans Cosmid T02E1, complete sequence
          Length = 33520

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 427   ataaaatgttcaaacttttc 446
             ||||||||||||||||||||
Sbjct: 22873 ataaaatgttcaaacttttc 22854

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>emb|AL354794.16| Human DNA sequence from clone RP11-203L2 on chromosome 9q21.11-21.2
              Contains the 5' end of the PIP5K1B gene for
              phosphatidylinositol-4-phosphate 5-kinase, type I, beta
              (MSS4, STM7), a novel gene (MGC17374), a adaptor-related
              protein complex 3, mu 2 subunit (P47B, AP47B, CLA20)
              (AP3M2) pseudogene, the 3' end of a novel gene and 2 CpG
              islands, complete sequence
          Length = 154071

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 402    gagccattctgagaattgat 421
              ||||||||||||||||||||
Sbjct: 124912 gagccattctgagaattgat 124931

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>emb|AL354694.18| Human DNA sequence from clone RP11-77E14 on chromosome 9 Contains a novel
              gene, complete sequence
          Length = 153324

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 337    cccctcaaaccaggcttggc 356
              ||||||||||||||||||||
Sbjct: 113455 cccctcaaaccaggcttggc 113436

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>emb|AL031782.1|HS708F5 Human DNA sequence from clone RP4-708F5 on chromosome 6p11.2-12.3
             Contains part of the COL21A1 gene for collagen, type XXI,
             alpha 1 (collagen XXI, collagen, type XX, alpha 1, COLA1L,
             COL20A1, DKFZp564B052), complete sequence
          Length = 126501

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 83    ttctgggataatcagttcat 102
             ||||||||||||||||||||
Sbjct: 93133 ttctgggataatcagttcat 93152

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>emb|Z47746.1|SC8557 S.cerevisiae chromosome IV cosmid 8557
          Length = 36217

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 666   aatatcttgcttggtggcgt 685
             ||||||||||||||||||||
Sbjct: 13717 aatatcttgcttggtggcgt 13736

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>emb|AJ508355.1|BMA508355 Brugia malayi ORF1, ORF2, ORF3 and ORF4 DNA and alt-1 gene
          Length = 32442

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 428   taaaatgttcaaacttttcg 447
             ||||||||||||||||||||
Sbjct: 22062 taaaatgttcaaacttttcg 22043

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>gb|AC121541.31| Mus musculus chromosome 5, clone RP24-132B11, complete sequence
          Length = 171770

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 608  ggatgaatttgagggatgtt 627
            ||||||||||||||||||||
Sbjct: 5321 ggatgaatttgagggatgtt 5340

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>gb|AC010069.9| Drosophila melanogaster 3L BAC RP98-17C18 (Roswell Park Cancer
             Institute Drosophila BAC Library) complete sequence
          Length = 166352

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 47    acaacaaaagatagcagcag 66
             ||||||||||||||||||||
Sbjct: 27723 acaacaaaagatagcagcag 27742

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>gb|AC116662.1| Rattus norvegicus, clone RP31-256A2, complete sequence
          Length = 112570

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 42    caacaacaacaaaagatagc 61
             ||||||||||||||||||||
Sbjct: 96363 caacaacaacaaaagatagc 96344

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>gb|AF438327.1| Homo sapiens alpha 1 type XXI collagen precursor (COL21A1) gene, complete
              cds, alternatively spliced
          Length = 381696

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 83     ttctgggataatcagttcat 102
              ||||||||||||||||||||
Sbjct: 184174 ttctgggataatcagttcat 184155

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>gb|AC091742.5| Homo sapiens BAC clone RP11-1220K2 from 7, complete sequence
          Length = 191041

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 41     gcaacaacaacaaaagatag 60
              ||||||||||||||||||||
Sbjct: 122006 gcaacaacaacaaaagatag 121987

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>gb|AC091614.3| Homo sapiens chromosome 1 clone RP4-665J23, complete sequence
          Length = 107764

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 507   cttctgttgagttgccggat 526
             ||||||||||||||||||||
Sbjct: 16125 cttctgttgagttgccggat 16106

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>emb|BX897687.7| Zebrafish DNA sequence from clone DKEY-151O8, complete sequence
          Length = 208227

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 38     gccgcaacaacaacaaaaga 57
              ||||||||||||||||||||
Sbjct: 148997 gccgcaacaacaacaaaaga 149016

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>ref|NM_001026692.2| Caenorhabditis elegans human KRIT 1 (Krev interaction
            trapped/cerebral cavernous malformation 1) homolog family
            member (kri-1) (kri-1) mRNA, complete cds
          Length = 2227

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 427  ataaaatgttcaaacttttc 446
            ||||||||||||||||||||
Sbjct: 2195 ataaaatgttcaaacttttc 2214

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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 128      ggcgagcgagttggagacca 147
                ||||||||||||||||||||
Sbjct: 28508650 ggcgagcgagttggagacca 28508669

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>gb|AC068790.36| Homo sapiens 12 BAC RP11-214K3 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 198537

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 559   ctgtgggtcttgaccttatc 578
             ||||||||||||||||||||
Sbjct: 74567 ctgtgggtcttgaccttatc 74548

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>gb|AC007278.4| Homo sapiens BAC clone RP11-308G20 from 2, complete sequence
          Length = 162508

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 79    agcattctgggataatcagttcat 102
             ||||||||||||||| ||||||||
Sbjct: 37421 agcattctgggataagcagttcat 37444

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>gb|AC005037.2| Homo sapiens BAC clone RP11-469M7 from 2, complete sequence
          Length = 190508

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 358    gtatcatctgccaccagatc 377
              ||||||||||||||||||||
Sbjct: 169597 gtatcatctgccaccagatc 169578

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>dbj|AP006268.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0037D09
          Length = 140470

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 128   ggcgagcgagttggagacca 147
             ||||||||||||||||||||
Sbjct: 74402 ggcgagcgagttggagacca 74421

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>dbj|AP004343.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0618H09
          Length = 142306

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 128   ggcgagcgagttggagacca 147
             ||||||||||||||||||||
Sbjct: 66191 ggcgagcgagttggagacca 66210

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>gb|AC144691.3| Didelphis virginiana clone LB3-241H11, complete sequence
          Length = 158347

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 58    tagcagcagtagtagagtag 77
             ||||||||||||||||||||
Sbjct: 27406 tagcagcagtagtagagtag 27425

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>dbj|AK101251.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033032F02, full
           insert sequence
          Length = 2035

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 128 ggcgagcgagttggagacca 147
           ||||||||||||||||||||
Sbjct: 731 ggcgagcgagttggagacca 712

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>gb|AE003524.5| Drosophila melanogaster chromosome 3L, section 61 of 83 of the complete
             sequence
          Length = 425677

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 47    acaacaaaagatagcagcag 66
             ||||||||||||||||||||
Sbjct: 98708 acaacaaaagatagcagcag 98689

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>gb|AC015583.34| Mus musculus chromosome 6, clone RP23-329P9, complete sequence
          Length = 201379

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 42     caacaacaacaaaagatagc 61
              ||||||||||||||||||||
Sbjct: 165007 caacaacaacaaaagatagc 164988

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>gb|AC091106.17| Mus musculus chromosome 6, clone RP23-103L13, complete sequence
          Length = 192344

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 42    caacaacaacaaaagatagc 61
             ||||||||||||||||||||
Sbjct: 40621 caacaacaacaaaagatagc 40602

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>emb|CT027681.7| Mouse DNA sequence from clone RP24-330H24 on chromosome 16, complete
             sequence
          Length = 190475

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 656   catccttagcaatatcttgc 675
             ||||||||||||||||||||
Sbjct: 78525 catccttagcaatatcttgc 78506

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>gb|DP000023.1| Didelphis virginiana target 1 genomic scaffold
          Length = 1751794

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 58      tagcagcagtagtagagtag 77
               ||||||||||||||||||||
Sbjct: 1251550 tagcagcagtagtagagtag 1251569


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,990,363
Number of Sequences: 3902068
Number of extensions: 6990363
Number of successful extensions: 231154
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 230907
Number of HSP's gapped (non-prelim): 245
length of query: 697
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 674
effective length of database: 17,143,297,704
effective search space: 11554582652496
effective search space used: 11554582652496
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result