ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags10h04 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT009064.1| Triticum aestivum clone wds3f.pk002.b4:fis, full insert mRNA sequence Length = 1201 Score = 852 bits (430), Expect = 0.0 Identities = 602/658 (91%), Gaps = 10/658 (1%) Strand = Plus / Minus Query: 29 ttacaaggttacaaatatctggaactatgagaggttgtttgcagcgacaaggtacaacaa 88 |||| ||||||| || | ||| |||||||| || |||||||| |||||||| |||||||| Sbjct: 1179 ttaccaggttaccaacacctgaaactatgatagattgtttgcggcgacaagatacaacaa 1120 Query: 89 cagaacacgcccagcgcttttatccttctccagataaaatagttgcgttctctccagcat 148 ||||||||||| ||| ||||||||||||| ||| | ||| |||| ||||||||||| Sbjct: 1119 cagaacacgccaagcttttttatccttctctaga----acagtcgcgtcctctccagcat 1064 Query: 149 atacattattaccaaaaatagaacacactgttattaaggaaacgtttccttttacaaatc 208 ||||||||||||||||| ||| |||||||| ||| ||||| ||||| |||||| Sbjct: 1063 atacattattaccaaaataagaccacactgt----aagcaaacgcctcctt--acaaatt 1010 Query: 209 aaaagatgtaccatttggtatcctcctatccaagaaaagcttctgagagcctcatgttga 268 ||| |||||||||||||||||||||| ||||||||||||||||||||||||| |||||| Sbjct: 1009 gaaacatgtaccatttggtatcctcctgtccaagaaaagcttctgagagcctcgtgttga 950 Query: 269 agagtcgggcgtgttggggaacgtctgggccaactggaaccgctcgcctcatcaacacaa 328 |||||| || ||||| |||| ||||||||| || ||||||||||||||| ||||||||| Sbjct: 949 agagtcctgcatgttgcggaaagtctgggccgaccggaaccgctcgcctcgtcaacacaa 890 Query: 329 tttaggagaacctctcattgaagattcctgcaagttgggcaaaaccatttccctttgaat 388 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 889 tttaggagaacctctcattgaagattcctgcaagttgggcaaaaccatttccctttgaat 830 Query: 389 cttgtttctggtgtcagaccaacacaagagtagtggaaccattcgcctccttcacaattt 448 ||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||| Sbjct: 829 cttgtttctggtgtcagaccaacgcacgagtaatggaaccattcgcctccttcacaattc 770 Query: 449 tcattgtcacaagcaatcatatcaccatatgaaacctggtggcatatacaatatgtcggc 508 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 769 tcattgtcacaagcaatcatatcaccatatgaaacctggtggcatatacaatatgttggt 710 Query: 509 tcatttggatcaatcatttgatccacatccatagatgcaacggctttcttgttgctgcta 568 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 709 tcatttggatcaatcatttgatccacatccatagatgcaacggccttcttgttgctgcta 650 Query: 569 cctggagggggcattaaatcgaagtccatacctctctccctatccctctcccattccttc 628 ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| Sbjct: 649 cctggagggggcattaagtcgaagtccatacctctctccctatccctatcccattccttc 590 Query: 629 tctctgacaaacttcctggctgcttggggtgtactaaaactggacctncgtctttcat 686 ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| Sbjct: 589 tctctgacaaacttccttgctgcttggggtgtactaaaactggacctccgtctttcat 532
>gb|BT009098.1| Triticum aestivum clone wkm2c.pk006.d11:fis, full insert mRNA sequence Length = 772 Score = 688 bits (347), Expect = 0.0 Identities = 493/540 (91%), Gaps = 10/540 (1%) Strand = Plus / Minus Query: 25 atggttacaaggttacaaatatctggaactatgagaggttgtttgcagcgacaaggtaca 84 |||||||| ||||||| || | |||||||||||| || |||||||| |||||||| |||| Sbjct: 537 atggttaccaggttaccaacacctggaactatgatagattgtttgcggcgacaagataca 478 Query: 85 acaacagaacacgcccagcgcttttatccttctccagataaaatagttgcgttctctcca 144 ||||||||||||||| |||| ||||||||||||| || || |||||||| ||||||| Sbjct: 477 acaacagaacacgccaagcgtttttatccttctc----tagaacagttgcgtcctctcca 422 Query: 145 gcatatacattattaccaaaaatagaacacactgttattaaggaaacgtttccttttaca 204 ||||||||||||||||||||| ||| ||| ||| |||| || || |||| |||| Sbjct: 421 gcatatacattattaccaaaataagagcacgctg----taagtaatcgcctcct--taca 368 Query: 205 aatcaaaagatgtaccatttggtatcctcctatccaagaaaagcttctgagagcctcatg 264 ||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 367 aattgaaacatgtaccatttggtatcctcctgtccaagaaaagcttctgagagcctcatg 308 Query: 265 ttgaagagtcgggcgtgttggggaacgtctgggccaactggaaccgctcgcctcatcaac 324 |||||||||| || ||||| |||| ||||||||| ||||||||||||| |||||||||| Sbjct: 307 ttgaagagtcctgcatgttgcggaaagtctgggccgactggaaccgctcccctcatcaac 248 Query: 325 acaatttaggagaacctctcattgaagattcctgcaagttgggcaaaaccatttcccttt 384 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 247 acaatttaggagaacctctcattgaagattcctgcaagttgggcaaaaccatttcccttt 188 Query: 385 gaatcttgtttctggtgtcagaccaacacaagagtagtggaaccattcgcctccttcaca 444 ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| Sbjct: 187 gaatcttgtttctggtgtcagaccaacgcacgagtagtggaaccattcgcctccttcaca 128 Query: 445 attttcattgtcacaagcaatcatatcaccatatgaaacctggtggcatatacaatatgt 504 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 127 attctcattgtcacaagcaatcatatcaccatatgaaacctggtggcatatacaatatgt 68 Query: 505 cggctcatttggatcaatcatttgatccacatccatagatgcaacggctttcttgttgct 564 ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 67 cggttcatttggatcaatcatttgatccacatccatagatgcaacggccttcttgttgct 8
>dbj|AK106146.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-207-H03, full insert sequence Length = 1283 Score = 335 bits (169), Expect = 1e-88 Identities = 261/291 (89%), Gaps = 3/291 (1%) Strand = Plus / Minus Query: 324 cacaatttaggagaacctctcattgaagattcctgcaagttgggcaaaaccatttccctt 383 ||||| || ||||||||||||||| |||||||||||| |||||||||||||||||||| | Sbjct: 936 cacaactttggagaacctctcattaaagattcctgcatgttgggcaaaaccatttcccct 877 Query: 384 tgaatcttgtttctggtgtcagaccaacacaagagtagtggaaccattcgcctccttcac 443 ||||||| ||||||||||||||||||||||||| ||| ||||||||||| |||||||| | Sbjct: 876 tgaatctcgtttctggtgtcagaccaacacaagtgtaatggaaccattcacctccttcgc 817 Query: 444 aattttcattgtcacaagcaatcatatcaccatatgaaacctggtggcatatacaatatg 503 | || |||||||||||||||||||||||||||||||||| ||||||||||||||| |||| Sbjct: 816 agttatcattgtcacaagcaatcatatcaccatatgaaatctggtggcatatacagtatg 757 Query: 504 tcggctcatttggatcaatcatttgatccacatccatagatgcaacggctttcttgttgc 563 | || |||||||||||||| |||||||||||||||||| |||| | |||||||| Sbjct: 756 ttggttcatttggatcaattgtttgatccacatccataggtgcagttgttttcttgt--- 700 Query: 564 tgctacctggagggggcattaaatcgaagtccatacctctctccctatccc 614 |||||||||||||||||||||| |||||||||||||| || ||||| |||| Sbjct: 699 tgctacctggagggggcattaagtcgaagtccatacccctttccctgtccc 649
>ref|XM_469742.1| Oryza sativa (japonica cultivar-group), mRNA Length = 759 Score = 182 bits (92), Expect = 1e-42 Identities = 148/166 (89%), Gaps = 3/166 (1%) Strand = Plus / Minus Query: 449 tcattgtcacaagcaatcatatcaccatatgaaacctggtggcatatacaatatgtcggc 508 |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| || Sbjct: 686 tcattgtcacaagcaatcatatcaccatatgaaatctggtggcatatacagtatgttggt 627 Query: 509 tcatttggatcaatcatttgatccacatccatagatgcaacggctttcttgttgctgcta 568 |||||||||||||| |||||||||||||||||| |||| | |||||||| ||||| Sbjct: 626 tcatttggatcaattgtttgatccacatccataggtgcagttgttttcttgt---tgcta 570 Query: 569 cctggagggggcattaaatcgaagtccatacctctctccctatccc 614 ||||||||||||||||| |||||||||||||| || ||||| |||| Sbjct: 569 cctggagggggcattaagtcgaagtccatacccctttccctgtccc 524
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 161 bits (81), Expect = 4e-36 Identities = 102/109 (93%) Strand = Plus / Minus Query: 333 ggagaacctctcattgaagattcctgcaagttgggcaaaaccatttccctttgaatcttg 392 ||||||||||||||| |||||||||||| |||||||||||||||||||| |||||||| | Sbjct: 30502915 ggagaacctctcattaaagattcctgcatgttgggcaaaaccatttccccttgaatctcg 30502856 Query: 393 tttctggtgtcagaccaacacaagagtagtggaaccattcgcctccttc 441 |||||||||||||||||||||||| ||| ||||||||||| |||||||| Sbjct: 30502855 tttctggtgtcagaccaacacaagtgtaatggaaccattcacctccttc 30502807 Score = 125 bits (63), Expect = 2e-25 Identities = 116/133 (87%), Gaps = 3/133 (2%) Strand = Plus / Minus Query: 482 acctggtggcatatacaatatgtcggctcatttggatcaatcatttgatccacatccata 541 ||||||||||||||||| ||||| || |||||||||||||| ||||||||||||||||| Sbjct: 30501543 acctggtggcatatacagtatgttggttcatttggatcaattgtttgatccacatccata 30501484 Query: 542 gatgcaacggctttcttgttgctgctacctggagggggcattaaatcgaagtccatacct 601 | |||| | |||||||| |||||||||||||||||||||| |||||||||||||| Sbjct: 30501483 ggtgcagttgttttcttgt---tgctacctggagggggcattaagtcgaagtccataccc 30501427 Query: 602 ctctccctatccc 614 || ||||| |||| Sbjct: 30501426 ctttccctgtccc 30501414 Score = 67.9 bits (34), Expect = 4e-08 Identities = 34/34 (100%) Strand = Plus / Minus Query: 449 tcattgtcacaagcaatcatatcaccatatgaaa 482 |||||||||||||||||||||||||||||||||| Sbjct: 30501678 tcattgtcacaagcaatcatatcaccatatgaaa 30501645
>gb|AC091811.7| Oryza sativa chromosome 3 BAC OSJNBa0069E14 genomic sequence, complete sequence Length = 139872 Score = 161 bits (81), Expect = 4e-36 Identities = 102/109 (93%) Strand = Plus / Minus Query: 333 ggagaacctctcattgaagattcctgcaagttgggcaaaaccatttccctttgaatcttg 392 ||||||||||||||| |||||||||||| |||||||||||||||||||| |||||||| | Sbjct: 34488 ggagaacctctcattaaagattcctgcatgttgggcaaaaccatttccccttgaatctcg 34429 Query: 393 tttctggtgtcagaccaacacaagagtagtggaaccattcgcctccttc 441 |||||||||||||||||||||||| ||| ||||||||||| |||||||| Sbjct: 34428 tttctggtgtcagaccaacacaagtgtaatggaaccattcacctccttc 34380 Score = 125 bits (63), Expect = 2e-25 Identities = 116/133 (87%), Gaps = 3/133 (2%) Strand = Plus / Minus Query: 482 acctggtggcatatacaatatgtcggctcatttggatcaatcatttgatccacatccata 541 ||||||||||||||||| ||||| || |||||||||||||| ||||||||||||||||| Sbjct: 33116 acctggtggcatatacagtatgttggttcatttggatcaattgtttgatccacatccata 33057 Query: 542 gatgcaacggctttcttgttgctgctacctggagggggcattaaatcgaagtccatacct 601 | |||| | |||||||| |||||||||||||||||||||| |||||||||||||| Sbjct: 33056 ggtgcagttgttttcttgt---tgctacctggagggggcattaagtcgaagtccataccc 33000 Query: 602 ctctccctatccc 614 || ||||| |||| Sbjct: 32999 ctttccctgtccc 32987 Score = 67.9 bits (34), Expect = 4e-08 Identities = 34/34 (100%) Strand = Plus / Minus Query: 449 tcattgtcacaagcaatcatatcaccatatgaaa 482 |||||||||||||||||||||||||||||||||| Sbjct: 33251 tcattgtcacaagcaatcatatcaccatatgaaa 33218
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 161 bits (81), Expect = 4e-36 Identities = 102/109 (93%) Strand = Plus / Minus Query: 333 ggagaacctctcattgaagattcctgcaagttgggcaaaaccatttccctttgaatcttg 392 ||||||||||||||| |||||||||||| |||||||||||||||||||| |||||||| | Sbjct: 30594337 ggagaacctctcattaaagattcctgcatgttgggcaaaaccatttccccttgaatctcg 30594278 Query: 393 tttctggtgtcagaccaacacaagagtagtggaaccattcgcctccttc 441 |||||||||||||||||||||||| ||| ||||||||||| |||||||| Sbjct: 30594277 tttctggtgtcagaccaacacaagtgtaatggaaccattcacctccttc 30594229 Score = 125 bits (63), Expect = 2e-25 Identities = 116/133 (87%), Gaps = 3/133 (2%) Strand = Plus / Minus Query: 482 acctggtggcatatacaatatgtcggctcatttggatcaatcatttgatccacatccata 541 ||||||||||||||||| ||||| || |||||||||||||| ||||||||||||||||| Sbjct: 30592965 acctggtggcatatacagtatgttggttcatttggatcaattgtttgatccacatccata 30592906 Query: 542 gatgcaacggctttcttgttgctgctacctggagggggcattaaatcgaagtccatacct 601 | |||| | |||||||| |||||||||||||||||||||| |||||||||||||| Sbjct: 30592905 ggtgcagttgttttcttgt---tgctacctggagggggcattaagtcgaagtccataccc 30592849 Query: 602 ctctccctatccc 614 || ||||| |||| Sbjct: 30592848 ctttccctgtccc 30592836 Score = 67.9 bits (34), Expect = 4e-08 Identities = 34/34 (100%) Strand = Plus / Minus Query: 449 tcattgtcacaagcaatcatatcaccatatgaaa 482 |||||||||||||||||||||||||||||||||| Sbjct: 30593100 tcattgtcacaagcaatcatatcaccatatgaaa 30593067
>ref|NM_202298.1| Arabidopsis thaliana protein binding / zinc ion binding AT1G54390 transcript variant AT1G54390.4 mRNA, complete cds Length = 1161 Score = 73.8 bits (37), Expect = 7e-10 Identities = 82/97 (84%) Strand = Plus / Minus Query: 372 accatttccctttgaatcttgtttctggtgtcagaccaacacaagagtagtggaaccatt 431 ||||||||||||||||||| || || ||||| || ||||| || | ||||| ||||||| Sbjct: 798 accatttccctttgaatctggtctcaggtgtgaggccaacgcatgtatagtgaaaccatt 739 Query: 432 cgcctccttcacaattttcattgtcacaagcaatcat 468 | ||||||| ||||| ||||||||||| |||||||| Sbjct: 738 cacctccttggcaattctcattgtcacaggcaatcat 702
>ref|NM_202297.1| Arabidopsis thaliana protein binding / zinc ion binding AT1G54390 transcript variant AT1G54390.3 mRNA, complete cds Length = 1330 Score = 73.8 bits (37), Expect = 7e-10 Identities = 82/97 (84%) Strand = Plus / Minus Query: 372 accatttccctttgaatcttgtttctggtgtcagaccaacacaagagtagtggaaccatt 431 ||||||||||||||||||| || || ||||| || ||||| || | ||||| ||||||| Sbjct: 798 accatttccctttgaatctggtctcaggtgtgaggccaacgcatgtatagtgaaaccatt 739 Query: 432 cgcctccttcacaattttcattgtcacaagcaatcat 468 | ||||||| ||||| ||||||||||| |||||||| Sbjct: 738 cacctccttggcaattctcattgtcacaggcaatcat 702
>emb|BX816051.1|CNS0ADE6 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH25ZB04 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1128 Score = 73.8 bits (37), Expect = 7e-10 Identities = 82/97 (84%) Strand = Plus / Minus Query: 372 accatttccctttgaatcttgtttctggtgtcagaccaacacaagagtagtggaaccatt 431 ||||||||||||||||||| || || ||||| || ||||| || | ||||| ||||||| Sbjct: 784 accatttccctttgaatctggtctcaggtgtgaggccaacgcatgtatagtgaaaccatt 725 Query: 432 cgcctccttcacaattttcattgtcacaagcaatcat 468 | ||||||| ||||| ||||||||||| |||||||| Sbjct: 724 cacctccttggcaattctcattgtcacaggcaatcat 688
>emb|BX817142.1|CNS0AD79 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH89ZE11 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1326 Score = 73.8 bits (37), Expect = 7e-10 Identities = 82/97 (84%) Strand = Plus / Minus Query: 372 accatttccctttgaatcttgtttctggtgtcagaccaacacaagagtagtggaaccatt 431 ||||||||||||||||||| || || ||||| || ||||| || | ||||| ||||||| Sbjct: 794 accatttccctttgaatctggtctcaggtgtgaggccaacgcatgtatagtgaaaccatt 735 Query: 432 cgcctccttcacaattttcattgtcacaagcaatcat 468 | ||||||| ||||| ||||||||||| |||||||| Sbjct: 734 cacctccttggcaattctcattgtcacaggcaatcat 698
>emb|BX817807.1|CNS0ACNZ Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL42ZH01 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1150 Score = 73.8 bits (37), Expect = 7e-10 Identities = 82/97 (84%) Strand = Plus / Minus Query: 372 accatttccctttgaatcttgtttctggtgtcagaccaacacaagagtagtggaaccatt 431 ||||||||||||||||||| || || ||||| || ||||| || | ||||| ||||||| Sbjct: 787 accatttccctttgaatctggtctcaggtgttaggccaacgcatgtatagtgaaaccatt 728 Query: 432 cgcctccttcacaattttcattgtcacaagcaatcat 468 | ||||||| ||||| ||||||||||| |||||||| Sbjct: 727 cacctccttggcaattctcattgtcacaggcaatcat 691
>emb|BX817335.1|CNS0ACQM Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL16ZB11 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1206 Score = 73.8 bits (37), Expect = 7e-10 Identities = 82/97 (84%) Strand = Plus / Minus Query: 372 accatttccctttgaatcttgtttctggtgtcagaccaacacaagagtagtggaaccatt 431 ||||||||||||||||||| || || ||||| || ||||| || | ||||| ||||||| Sbjct: 814 accatttccctttgaatctggtctcaggtgtgaggccaacgcatgtatagtgaaaccatt 755 Query: 432 cgcctccttcacaattttcattgtcacaagcaatcat 468 | ||||||| ||||| ||||||||||| |||||||| Sbjct: 754 cacctccttggcaattctcattgtcacaggcaatcat 718
>gb|AY085569.1| Arabidopsis thaliana clone 157730 mRNA, complete sequence Length = 1190 Score = 73.8 bits (37), Expect = 7e-10 Identities = 82/97 (84%) Strand = Plus / Minus Query: 372 accatttccctttgaatcttgtttctggtgtcagaccaacacaagagtagtggaaccatt 431 ||||||||||||||||||| || || ||||| || ||||| || | ||||| ||||||| Sbjct: 787 accatttccctttgaatctggtctcaggtgtgaggccaacgcatgtatagtgaaaccatt 728 Query: 432 cgcctccttcacaattttcattgtcacaagcaatcat 468 | ||||||| ||||| ||||||||||| |||||||| Sbjct: 727 cacctccttggcaattctcattgtcacaggcaatcat 691
>gb|AC167711.1| Medicago truncatula chromosome 7 BAC clone mth2-167p21, complete sequence Length = 132340 Score = 63.9 bits (32), Expect = 6e-07 Identities = 71/84 (84%) Strand = Plus / Plus Query: 356 ctgcaagttgggcaaaaccatttccctttgaatcttgtttctggtgtcagaccaacacaa 415 ||||| ||||||||| |||| || || ||||| ||||| ||| |||| || |||||||| Sbjct: 40759 ctgcacgttgggcaataccactttcccttgaaccttgtctcttgtgttaggccaacacat 40818 Query: 416 gagtagtggaaccattcgcctcct 439 || |||||||||||||| |||||| Sbjct: 40819 gaatagtggaaccattcacctcct 40842 Score = 46.1 bits (23), Expect = 0.15 Identities = 26/27 (96%) Strand = Plus / Plus Query: 445 attttcattgtcacaagcaatcatatc 471 |||||| |||||||||||||||||||| Sbjct: 40953 attttcgttgtcacaagcaatcatatc 40979
>gb|AC092218.2| Drosophila melanogaster clone BACR12B06, complete sequence Length = 164565 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Minus Query: 462 caatcatatcaccatatgaaacctggtggcatatacaatatgtcggctcatttggatc 519 ||||||| || ||||| || ||||||||||||| |||||||| |||||||| ||||| Sbjct: 149267 caatcatctctccataggacacctggtggcataggcaatatgtgggctcattgggatc 149210
>gb|BT025072.1| Drosophila melanogaster IP15341 full insert cDNA Length = 695 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Minus Query: 462 caatcatatcaccatatgaaacctggtggcatatacaatatgtcggctcatttggatc 519 ||||||| || ||||| || ||||||||||||| |||||||| |||||||| ||||| Sbjct: 472 caatcatctctccataggacacctggtggcataggcaatatgtgggctcattgggatc 415
>ref|NM_165042.1| Drosophila melanogaster CG9293-RB, transcript variant B (CG9293), mRNA Length = 990 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Minus Query: 462 caatcatatcaccatatgaaacctggtggcatatacaatatgtcggctcatttggatc 519 ||||||| || ||||| || ||||||||||||| |||||||| |||||||| ||||| Sbjct: 783 caatcatctctccataggacacctggtggcataggcaatatgtgggctcattgggatc 726
>ref|NM_135803.2| Drosophila melanogaster CG9293-RA, transcript variant A (CG9293), mRNA Length = 1032 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Minus Query: 462 caatcatatcaccatatgaaacctggtggcatatacaatatgtcggctcatttggatc 519 ||||||| || ||||| || ||||||||||||| |||||||| |||||||| ||||| Sbjct: 825 caatcatctctccataggacacctggtggcataggcaatatgtgggctcattgggatc 768
>gb|AY061507.1| Drosophila melanogaster LD46333 full length cDNA Length = 1031 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Minus Query: 462 caatcatatcaccatatgaaacctggtggcatatacaatatgtcggctcatttggatc 519 ||||||| || ||||| || ||||||||||||| |||||||| |||||||| ||||| Sbjct: 807 caatcatctctccataggacacctggtggcataggcaatatgtgggctcattgggatc 750
>gb|AC009340.4|AC009340 Drosophila melanogaster, chromosome 2L, region 34A-34E, BAC clone BACR04E19, complete sequence Length = 197159 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Plus Query: 462 caatcatatcaccatatgaaacctggtggcatatacaatatgtcggctcatttggatc 519 ||||||| || ||||| || ||||||||||||| |||||||| |||||||| ||||| Sbjct: 175295 caatcatctctccataggacacctggtggcataggcaatatgtgggctcattgggatc 175352
>gb|AE003640.4| Drosophila melanogaster chromosome 2L, section 49 of 83 of the complete sequence Length = 271118 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Plus Query: 462 caatcatatcaccatatgaaacctggtggcatatacaatatgtcggctcatttggatc 519 ||||||| || ||||| || ||||||||||||| |||||||| |||||||| ||||| Sbjct: 3680 caatcatctctccataggacacctggtggcataggcaatatgtgggctcattgggatc 3737
>gb|AC005443.1|AC005443 Drosophila melanogaster, chromosome 2L, region 34B5-34B9, P1 clone DS05554, complete sequence Length = 81194 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Plus Query: 462 caatcatatcaccatatgaaacctggtggcatatacaatatgtcggctcatttggatc 519 ||||||| || ||||| || ||||||||||||| |||||||| |||||||| ||||| Sbjct: 77965 caatcatctctccataggacacctggtggcataggcaatatgtgggctcattgggatc 78022
>ref|NM_202296.1| Arabidopsis thaliana unknown protein AT1G54390 transcript variant AT1G54390.2 mRNA, complete cds Length = 1259 Score = 50.1 bits (25), Expect = 0.010 Identities = 58/69 (84%) Strand = Plus / Minus Query: 372 accatttccctttgaatcttgtttctggtgtcagaccaacacaagagtagtggaaccatt 431 ||||||||||||||||||| || || ||||| || ||||| || | ||||| ||||||| Sbjct: 884 accatttccctttgaatctggtctcaggtgtgaggccaacgcatgtatagtgaaaccatt 825 Query: 432 cgcctcctt 440 | ||||||| Sbjct: 824 cacctcctt 816
>ref|NM_104317.2| Arabidopsis thaliana unknown protein AT1G54390 transcript variant AT1G54390.1 mRNA, complete cds Length = 1400 Score = 50.1 bits (25), Expect = 0.010 Identities = 58/69 (84%) Strand = Plus / Minus Query: 372 accatttccctttgaatcttgtttctggtgtcagaccaacacaagagtagtggaaccatt 431 ||||||||||||||||||| || || ||||| || ||||| || | ||||| ||||||| Sbjct: 881 accatttccctttgaatctggtctcaggtgtgaggccaacgcatgtatagtgaaaccatt 822 Query: 432 cgcctcctt 440 | ||||||| Sbjct: 821 cacctcctt 813
>gb|AC005287.4| Arabidopsis thaliana chromosome I BAC F20D21 genomic sequence, complete sequence Length = 143186 Score = 50.1 bits (25), Expect = 0.010 Identities = 58/69 (84%) Strand = Plus / Plus Query: 372 accatttccctttgaatcttgtttctggtgtcagaccaacacaagagtagtggaaccatt 431 ||||||||||||||||||| || || ||||| || ||||| || | ||||| ||||||| Sbjct: 76597 accatttccctttgaatctggtctcaggtgtgaggccaacgcatgtatagtgaaaccatt 76656 Query: 432 cgcctcctt 440 | ||||||| Sbjct: 76657 cacctcctt 76665
>gb|AY099578.1| Arabidopsis thaliana unknown protein (At1g54390) mRNA, complete cds Length = 1361 Score = 50.1 bits (25), Expect = 0.010 Identities = 58/69 (84%) Strand = Plus / Minus Query: 372 accatttccctttgaatcttgtttctggtgtcagaccaacacaagagtagtggaaccatt 431 ||||||||||||||||||| || || ||||| || ||||| || | ||||| ||||||| Sbjct: 863 accatttccctttgaatctggtctcaggtgtgaggccaacgcatgtatagtgaaaccatt 804 Query: 432 cgcctcctt 440 | ||||||| Sbjct: 803 cacctcctt 795
>emb|BX814363.1|CNS0AAV4 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB6ZE01 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1254 Score = 50.1 bits (25), Expect = 0.010 Identities = 58/69 (84%) Strand = Plus / Minus Query: 372 accatttccctttgaatcttgtttctggtgtcagaccaacacaagagtagtggaaccatt 431 ||||||||||||||||||| || || ||||| || ||||| || | ||||| ||||||| Sbjct: 884 accatttccctttgaatctggtctcaggtgtgaggccaacgcatgtatagtgaaaccatt 825 Query: 432 cgcctcctt 440 | ||||||| Sbjct: 824 cacctcctt 816
>gb|BT002159.1| Arabidopsis thaliana unknown protein (At1g54390) mRNA, complete cds Length = 1066 Score = 50.1 bits (25), Expect = 0.010 Identities = 58/69 (84%) Strand = Plus / Minus Query: 372 accatttccctttgaatcttgtttctggtgtcagaccaacacaagagtagtggaaccatt 431 ||||||||||||||||||| || || ||||| || ||||| || | ||||| ||||||| Sbjct: 834 accatttccctttgaatctggtctcaggtgtgaggccaacgcatgtatagtgaaaccatt 775 Query: 432 cgcctcctt 440 | ||||||| Sbjct: 774 cacctcctt 766
>gb|AC153624.20| Mus musculus 6 BAC RP23-117P3 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 224115 Score = 48.1 bits (24), Expect = 0.038 Identities = 30/32 (93%) Strand = Plus / Minus Query: 602 ctctccctatccctctcccattccttctctct 633 |||||||| ||||||||||||||| ||||||| Sbjct: 24774 ctctccctctccctctcccattccctctctct 24743
>gb|AC140786.3| Mus musculus BAC clone RP23-455E11 from chromosome 3, complete sequence Length = 174791 Score = 48.1 bits (24), Expect = 0.038 Identities = 30/32 (93%) Strand = Plus / Plus Query: 599 cctctctccctatccctctcccattccttctc 630 ||||||||||| |||||||||||| ||||||| Sbjct: 100655 cctctctccctctccctctcccatcccttctc 100686
>gb|AC161223.4| Mus musculus chromosome 3, clone RP24-173A7, complete sequence Length = 156824 Score = 48.1 bits (24), Expect = 0.038 Identities = 27/28 (96%) Strand = Plus / Plus Query: 593 tccatacctctctccctatccctctccc 620 ||||||||||||||||| |||||||||| Sbjct: 145674 tccatacctctctccctctccctctccc 145701
>gb|AC084052.9| Mus Musculus Strain C57BL6/J chromosome 3 RP23-43D3, complete sequence Length = 134464 Score = 48.1 bits (24), Expect = 0.038 Identities = 30/32 (93%) Strand = Plus / Plus Query: 599 cctctctccctatccctctcccattccttctc 630 ||||||||||| |||||||||||| ||||||| Sbjct: 38718 cctctctccctctccctctcccatcccttctc 38749
>gb|AC090750.25| Mus musculus strain C57BL/6J clone rp23-329l13 map 3, complete sequence Length = 209304 Score = 48.1 bits (24), Expect = 0.038 Identities = 30/32 (93%) Strand = Plus / Plus Query: 599 cctctctccctatccctctcccattccttctc 630 ||||||||||| |||||||||||| ||||||| Sbjct: 156569 cctctctccctctccctctcccatcccttctc 156600
>gb|AC115935.9| Mus musculus chromosome 3, clone RP24-545D23, complete sequence Length = 145137 Score = 48.1 bits (24), Expect = 0.038 Identities = 27/28 (96%) Strand = Plus / Minus Query: 593 tccatacctctctccctatccctctccc 620 ||||||||||||||||| |||||||||| Sbjct: 127381 tccatacctctctccctctccctctccc 127354
>gb|AC155729.3| Mus musculus 6 BAC RP24-173B18 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 198782 Score = 48.1 bits (24), Expect = 0.038 Identities = 30/32 (93%) Strand = Plus / Minus Query: 602 ctctccctatccctctcccattccttctctct 633 |||||||| ||||||||||||||| ||||||| Sbjct: 166132 ctctccctctccctctcccattccctctctct 166101
>ref|NM_133957.2| Mus musculus nuclear factor of activated T-cells 5 (Nfat5), transcript variant a, mRNA Length = 13040 Score = 46.1 bits (23), Expect = 0.15 Identities = 32/35 (91%) Strand = Plus / Plus Query: 599 cctctctccctatccctctcccattccttctctct 633 ||||||||||| |||||||||| |||| ||||||| Sbjct: 8195 cctctctccctttccctctccctttccctctctct 8229
>gb|AY812502.1| Schistosoma japonicum SJCHGC08302 protein mRNA, partial cds Length = 341 Score = 46.1 bits (23), Expect = 0.15 Identities = 56/67 (83%) Strand = Plus / Minus Query: 455 tcacaagcaatcatatcaccatatgaaacctggtggcatatacaatatgtcggctcattt 514 ||||| |||| ||| |||||||| || || || || ||||| ||||| || ||||||||| Sbjct: 258 tcacatgcaaccatttcaccataagatacttgttgacatatgcaataggtaggctcattt 199 Query: 515 ggatcaa 521 ||||||| Sbjct: 198 ggatcaa 192
>gb|AY555278.1| Mus musculus strain 129/SvJ chromosome 17 clone 522h13, complete sequence Length = 148334 Score = 46.1 bits (23), Expect = 0.15 Identities = 29/31 (93%) Strand = Plus / Minus Query: 602 ctctccctatccctctcccattccttctctc 632 |||||||| |||||||||| ||||||||||| Sbjct: 120209 ctctccctctccctctccctttccttctctc 120179
>gb|AC158364.4| Mus musculus BAC clone RP23-187J8 from chromosome 8, complete sequence Length = 208153 Score = 46.1 bits (23), Expect = 0.15 Identities = 32/35 (91%) Strand = Plus / Plus Query: 599 cctctctccctatccctctcccattccttctctct 633 ||||||||||| |||||||||| |||| ||||||| Sbjct: 154215 cctctctccctttccctctccctttccctctctct 154249
>gb|AF532116.1| Mus musculus strain 129/SvJ BAC clone citb585c7 from the MHC region, complete sequence Length = 192871 Score = 46.1 bits (23), Expect = 0.15 Identities = 29/31 (93%) Strand = Plus / Minus Query: 602 ctctccctatccctctcccattccttctctc 632 |||||||| |||||||||| ||||||||||| Sbjct: 36615 ctctccctctccctctccctttccttctctc 36585
>gb|AF453571.2| Mus musculus transcription factor NFAT5 (Nfat5) mRNA, complete cds Length = 13040 Score = 46.1 bits (23), Expect = 0.15 Identities = 32/35 (91%) Strand = Plus / Plus Query: 599 cctctctccctatccctctcccattccttctctct 633 ||||||||||| |||||||||| |||| ||||||| Sbjct: 8195 cctctctccctttccctctccctttccctctctct 8229
>gb|AC005807.1|AC005807 Mus musculus chromosome 17 BAC clone citb585c7 from MHC region, complete sequence Length = 65870 Score = 46.1 bits (23), Expect = 0.15 Identities = 29/31 (93%) Strand = Plus / Plus Query: 602 ctctccctatccctctcccattccttctctc 632 |||||||| |||||||||| ||||||||||| Sbjct: 29393 ctctccctctccctctccctttccttctctc 29423
>gb|AC132126.3| Mus musculus BAC clone RP23-400E10 from 8, complete sequence Length = 204800 Score = 46.1 bits (23), Expect = 0.15 Identities = 32/35 (91%) Strand = Plus / Minus Query: 599 cctctctccctatccctctcccattccttctctct 633 ||||||||||| |||||||||| |||| ||||||| Sbjct: 194343 cctctctccctttccctctccctttccctctctct 194309
>gb|AC104862.15| Mus musculus chromosome 15, clone RP23-124I9, complete sequence Length = 168581 Score = 44.1 bits (22), Expect = 0.60 Identities = 31/34 (91%) Strand = Plus / Plus Query: 602 ctctccctatccctctcccattccttctctctga 635 |||||||| |||||||||| ||||||||||||| Sbjct: 45698 ctctccctctccctctccctctccttctctctga 45731 Score = 40.1 bits (20), Expect = 9.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 599 cctctctccctatccctctcccattcct 626 ||||||||||| |||||||||| ||||| Sbjct: 102129 cctctctccctctccctctccctttcct 102156
>gb|BC059768.1| Xenopus tropicalis inhibitor of growth family, member 5, mRNA (cDNA clone MGC:76007 IMAGE:5384618), complete cds Length = 1295 Score = 44.1 bits (22), Expect = 0.60 Identities = 37/42 (88%) Strand = Plus / Minus Query: 451 attgtcacaagcaatcatatcaccatatgaaacctggtggca 492 |||||||||| ||||||| || ||||| || ||||||||||| Sbjct: 671 attgtcacaaccaatcatttccccataggacacctggtggca 630
>emb|CT030479.1| Xenopus tropicalis finished cDNA, clone TGas087m13 Length = 2331 Score = 44.1 bits (22), Expect = 0.60 Identities = 37/42 (88%) Strand = Plus / Minus Query: 451 attgtcacaagcaatcatatcaccatatgaaacctggtggca 492 |||||||||| ||||||| || ||||| || ||||||||||| Sbjct: 1447 attgtcacaaccaatcatttccccataggacacctggtggca 1406
>emb|BX323862.18| Zebrafish DNA sequence from clone DKEYP-97A5 in linkage group 6, complete sequence Length = 184810 Score = 44.1 bits (22), Expect = 0.60 Identities = 31/34 (91%) Strand = Plus / Minus Query: 599 cctctctccctatccctctcccattccttctctc 632 ||||||||||| |||||||||| |||| |||||| Sbjct: 81048 cctctctccctctccctctccctttccctctctc 81015
>ref|NM_203536.1| Xenopus tropicalis inhibitor of growth family, member 5 (ing5), mRNA Length = 1295 Score = 44.1 bits (22), Expect = 0.60 Identities = 37/42 (88%) Strand = Plus / Minus Query: 451 attgtcacaagcaatcatatcaccatatgaaacctggtggca 492 |||||||||| ||||||| || ||||| || ||||||||||| Sbjct: 671 attgtcacaaccaatcatttccccataggacacctggtggca 630
>emb|AL672173.9| Mouse DNA sequence from clone RP23-149O19 on chromosome 11 Contains a novel pseudogene similar to RIKEN cDNA 1700066C05 gene, complete sequence Length = 118767 Score = 44.1 bits (22), Expect = 0.60 Identities = 22/22 (100%) Strand = Plus / Plus Query: 599 cctctctccctatccctctccc 620 |||||||||||||||||||||| Sbjct: 78582 cctctctccctatccctctccc 78603
>dbj|AP007154.1| Aspergillus oryzae RIB40 genomic DNA, SC001 Length = 2005935 Score = 44.1 bits (22), Expect = 0.60 Identities = 22/22 (100%) Strand = Plus / Minus Query: 635 acaaacttcctggctgcttggg 656 |||||||||||||||||||||| Sbjct: 140046 acaaacttcctggctgcttggg 140025
>ref|XM_392728.2| PREDICTED: Apis mellifera similar to inhibitor of growth family, member 3 isoform 1 (LOC409204), mRNA Length = 2004 Score = 44.1 bits (22), Expect = 0.60 Identities = 58/70 (82%) Strand = Plus / Minus Query: 451 attgtcacaagcaatcatatcaccatatgaaacctggtggcatatacaatatgtcggctc 510 ||||||||| |||| |||||| ||||| || || || | |||||||||||| | || || Sbjct: 981 attgtcacaggcaaccatatctccataagatacttgattacatatacaatatcttggttc 922 Query: 511 atttggatca 520 |||||||||| Sbjct: 921 atttggatca 912
>gb|AC005297.1| Homo sapiens X BAC GS1-466O4 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 177503 Score = 44.1 bits (22), Expect = 0.60 Identities = 22/22 (100%) Strand = Plus / Plus Query: 622 ttccttctctctgacaaacttc 643 |||||||||||||||||||||| Sbjct: 166867 ttccttctctctgacaaacttc 166888
>emb|AL928974.12| Mouse DNA sequence from clone RP23-56C2 on chromosome 2, complete sequence Length = 195442 Score = 44.1 bits (22), Expect = 0.60 Identities = 31/34 (91%) Strand = Plus / Minus Query: 600 ctctctccctatccctctcccattccttctctct 633 |||||||||| ||||||||| |||||||||||| Sbjct: 74093 ctctctccctctccctctccttttccttctctct 74060
>emb|CT025675.12| Mouse DNA sequence from clone RP24-289M11 on chromosome 14, complete sequence Length = 147656 Score = 44.1 bits (22), Expect = 0.60 Identities = 31/34 (91%) Strand = Plus / Plus Query: 600 ctctctccctatccctctcccattccttctctct 633 |||||||||| |||||||||| ||||||||||| Sbjct: 111350 ctctctccctctccctctccctctccttctctct 111383
>emb|AL806514.8| Mouse DNA sequence from clone RP23-18D24 on chromosome 2, complete sequence Length = 206358 Score = 44.1 bits (22), Expect = 0.60 Identities = 31/34 (91%) Strand = Plus / Minus Query: 599 cctctctccctatccctctcccattccttctctc 632 ||||||||||| |||||||||| |||| |||||| Sbjct: 203578 cctctctccctttccctctccctttccctctctc 203545
>emb|AL691474.29| Mouse DNA sequence from clone RP23-406D5 on chromosome 4, complete sequence Length = 176652 Score = 44.1 bits (22), Expect = 0.60 Identities = 31/34 (91%) Strand = Plus / Minus Query: 599 cctctctccctatccctctcccattccttctctc 632 ||||||||||| |||||||||| |||| |||||| Sbjct: 173930 cctctctccctctccctctccctttccctctctc 173897
>gb|AC161435.7| Mus musculus chromosome 8, clone RP23-78L21, complete sequence Length = 219937 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 600 ctctctccctatccctctccc 620 ||||||||||||||||||||| Sbjct: 168166 ctctctccctatccctctccc 168186
>gb|AC091477.6| Mus musculus chromosome 1, clone RP23-309P1, complete sequence Length = 218109 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 602 ctctccctatccctctcccattccttctc 630 |||||||| ||||||||||||||| |||| Sbjct: 136150 ctctccctctccctctcccattccctctc 136178
>ref|XM_416146.1| PREDICTED: Gallus gallus similar to RIKEN cDNA 4921537D05 (LOC417904), mRNA Length = 1916 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 373 ccatttccctttgaatcttgtttct 397 ||||||| ||||||||||||||||| Sbjct: 1227 ccatttcactttgaatcttgtttct 1203
>gb|AC162897.4| Mus musculus chromosome 7, clone RP23-371C4, complete sequence Length = 187677 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 602 ctctccctatccctctcccattcct 626 |||||||| |||||||||||||||| Sbjct: 18421 ctctccctctccctctcccattcct 18445
>gb|AC125125.4| Mus musculus BAC clone RP24-274E6 from chromosome 8, complete sequence Length = 180801 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 600 ctctctccctatccctctccc 620 ||||||||||||||||||||| Sbjct: 3272 ctctctccctatccctctccc 3292
>gb|AC126271.4| Mus musculus BAC clone RP23-237H9 from chromosome 5, complete sequence Length = 194736 Score = 42.1 bits (21), Expect = 2.4 Identities = 30/33 (90%) Strand = Plus / Plus Query: 602 ctctccctatccctctcccattccttctctctg 634 |||||||| |||||||||| |||||||||||| Sbjct: 94870 ctctccctctccctctccctctccttctctctg 94902
>gb|AC123040.4| Mus musculus BAC clone RP24-532L16 from chromosome 8, complete sequence Length = 171193 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 601 tctctccctatccctctcccattcc 625 ||||||||| ||||||||||||||| Sbjct: 113125 tctctccctctccctctcccattcc 113149
>gb|AC122453.4| Mus musculus BAC clone RP24-258A18 from chromosome 17, complete sequence Length = 177389 Score = 42.1 bits (21), Expect = 2.4 Identities = 30/33 (90%) Strand = Plus / Plus Query: 601 tctctccctatccctctcccattccttctctct 633 ||||||| | |||||||||| |||||||||||| Sbjct: 57367 tctctccttttccctctccctttccttctctct 57399
>gb|AC122016.4| Mus musculus BAC clone RP24-359J23 from chromosome 16, complete sequence Length = 163943 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 154 ttattaccaaaaatagaacac 174 ||||||||||||||||||||| Sbjct: 44903 ttattaccaaaaatagaacac 44883
>gb|AC121890.3| Mus musculus BAC clone RP24-146K18 from chromosome 16, complete sequence Length = 136955 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 154 ttattaccaaaaatagaacac 174 ||||||||||||||||||||| Sbjct: 2384 ttattaccaaaaatagaacac 2404
>gb|AC110820.4| Mus musculus BAC clone RP23-273L3 from 15, complete sequence Length = 168415 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 600 ctctctccctatccctctccc 620 ||||||||||||||||||||| Sbjct: 55268 ctctctccctatccctctccc 55288
>emb|AL162691.1|ATT28A8 Arabidopsis thaliana DNA chromosome 3, BAC clone T28A8 Length = 97371 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 317 tcatcaacacaatttaggagaacct 341 ||||||||||||| ||||||||||| Sbjct: 70867 tcatcaacacaatataggagaacct 70843
>emb|AL627348.12| Mouse DNA sequence from clone RP23-421L2 on chromosome 11 Contains part of the gene for a novel protein similar to human RAP1 GTPase activating protein 1 RAP1GA1 and a CpG island, complete sequence Length = 146061 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 611 tccctctcccattccttctct 631 ||||||||||||||||||||| Sbjct: 60320 tccctctcccattccttctct 60340
>emb|AL669826.10| Mouse DNA sequence from clone RP23-5N19 on chromosome 11 Contains a novel gene and a CpG island, complete sequence Length = 154338 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 600 ctctctccctatccctctcccattccttc 628 |||||||||| |||||| ||||||||||| Sbjct: 140783 ctctctccctctccctcccccattccttc 140755
>emb|AL807825.5| Mouse DNA sequence from clone RP23-453B22 on chromosome 11 Contains a transformer 2 alpha homolog (Drosophila) (Tra2a) pseudogene, three novel genes, the Sf3a1 gene for splicing factor 3a subunit 1, the ortholog of human EBP50-PDZ interactor EPI64, a ribosomal protein L18a (Rpl18a) pseudogene, the Osm gene for oncostatin M and two CpG islands, complete sequence Length = 116081 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 612 ccctctcccattccttctctc 632 ||||||||||||||||||||| Sbjct: 74136 ccctctcccattccttctctc 74116
>emb|AJ719950.1| Gallus gallus mRNA for hypothetical protein, clone 8l5 Length = 1610 Score = 42.1 bits (21), Expect = 2.4 Identities = 36/41 (87%) Strand = Plus / Minus Query: 452 ttgtcacaagcaatcatatcaccatatgaaacctggtggca 492 |||||||| ||||||| || ||||| |||||||||||||| Sbjct: 664 ttgtcacagccaatcatctccccataggaaacctggtggca 624
>ref|NM_001006251.1| Gallus gallus inhibitor of growth family, member 4 (ING4), mRNA Length = 1610 Score = 42.1 bits (21), Expect = 2.4 Identities = 36/41 (87%) Strand = Plus / Minus Query: 452 ttgtcacaagcaatcatatcaccatatgaaacctggtggca 492 |||||||| ||||||| || ||||| |||||||||||||| Sbjct: 664 ttgtcacagccaatcatctccccataggaaacctggtggca 624
>emb|BX324207.7| Zebrafish DNA sequence from clone DKEY-11F7 in linkage group 16, complete sequence Length = 251037 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 145 gcatatacattattaccaaaa 165 ||||||||||||||||||||| Sbjct: 144304 gcatatacattattaccaaaa 144284
>gb|AC155830.7| Mus musculus 10 BAC RP24-495I3 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 189267 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 612 ccctctcccattccttctctctgac 636 ||||||| ||||||||||||||||| Sbjct: 159235 ccctctctcattccttctctctgac 159211
>gb|AC090386.13| Homo sapiens chromosome 18, clone RP11-797E24, complete sequence Length = 185563 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 612 ccctctcccattccttctctc 632 ||||||||||||||||||||| Sbjct: 88510 ccctctcccattccttctctc 88490
>gb|AC068273.5| Homo sapiens BAC clone RP11-89O10 from 2, complete sequence Length = 181016 Score = 42.1 bits (21), Expect = 2.4 Identities = 30/33 (90%) Strand = Plus / Minus Query: 600 ctctctccctatccctctcccattccttctctc 632 |||||||||| | |||||||| ||||||||||| Sbjct: 164287 ctctctcccttttcctctccctttccttctctc 164255
>gb|AC007376.9|AC007376 Homo sapiens chromosome 14 clone 99E15 containing gene for KIAA 1036, complete CDS, complete sequence Length = 186330 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 602 ctctccctatccctctcccattccttctc 630 ||||||||||||||||||| |||||||| Sbjct: 149951 ctctccctatccctctccctctccttctc 149979
>gb|AC007653.5|AC007653 Homo sapiens chromosome , clone RP11-51A1, complete sequence Length = 159926 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 161 caaaaatagaacacactgttattaa 185 |||||||| |||||||||||||||| Sbjct: 35577 caaaaatataacacactgttattaa 35601
>gb|AC092939.8| Homo sapiens 3 BAC RP11-791G22 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 167152 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 161 caaaaatagaacacactgttattaa 185 |||||||| |||||||||||||||| Sbjct: 164371 caaaaatataacacactgttattaa 164395
>emb|CT571251.8| Mouse DNA sequence from clone RP23-169N10 on chromosome 14, complete sequence Length = 58749 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 596 atacctctctccctatccctctccc 620 |||||||||||||| |||||||||| Sbjct: 27350 atacctctctccctctccctctccc 27374
>gb|AC131795.3| Mus musculus BAC clone RP24-490N11 from 10, complete sequence Length = 181961 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 605 tccctatccctctcccattcc 625 ||||||||||||||||||||| Sbjct: 89774 tccctatccctctcccattcc 89754
>gb|AC122892.4| Mus musculus BAC clone RP23-66P19 from 8, complete sequence Length = 216389 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 600 ctctctccctatccctctccc 620 ||||||||||||||||||||| Sbjct: 30827 ctctctccctatccctctccc 30807
>emb|AL607025.21| Mouse DNA sequence from clone RP23-331L12 on chromosome 11, complete sequence Length = 142870 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 599 cctctctccctatccctctcc 619 ||||||||||||||||||||| Sbjct: 86641 cctctctccctatccctctcc 86621
>emb|AL591882.12| Mouse DNA sequence from clone RP23-53L16 on chromosome 2, complete sequence Length = 251814 Score = 42.1 bits (21), Expect = 2.4 Identities = 30/33 (90%) Strand = Plus / Minus Query: 599 cctctctccctatccctctcccattccttctct 631 ||||||||||| |||||||||| |||| ||||| Sbjct: 226738 cctctctccctctccctctccctttccctctct 226706
>gb|AC152947.1| Mus musculus 10 BAC RP23-12H20 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 222139 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 598 acctctctccctatccctctccca 621 |||||||||||| ||||||||||| Sbjct: 194703 acctctctccctctccctctccca 194726
>gb|AC153973.33| Mus musculus 10 BAC RP24-158P6 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 164139 Score = 40.1 bits (20), Expect = 9.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 602 ctctccctatccctctcccattccttctctct 633 |||||||| |||||||||| ||||||||||| Sbjct: 116589 ctctccctctccctctccctctccttctctct 116558
>gb|AC107838.16| Mus musculus chromosome 1, clone RP23-274N9, complete sequence Length = 160232 Score = 40.1 bits (20), Expect = 9.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 602 ctctccctatccctctcccattccttctctct 633 |||||||| |||||||||| ||||||||||| Sbjct: 39772 ctctccctctccctctccctctccttctctct 39741
>gb|AC113448.14| Mus musculus chromosome 15, clone RP23-1N23, complete sequence Length = 216103 Score = 40.1 bits (20), Expect = 9.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 599 cctctctccctatccctctcccattccttctc 630 ||||||||||| |||||||||| |||| |||| Sbjct: 69851 cctctctccctctccctctccctttccctctc 69882
>gb|AC102151.8| Mus musculus chromosome 18, clone RP23-312L17, complete sequence Length = 175398 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 600 ctctctccctatccctctcc 619 |||||||||||||||||||| Sbjct: 135632 ctctctccctatccctctcc 135651
>gb|AC117621.7| Mus musculus chromosome 8, clone RP23-114B10, complete sequence Length = 214933 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 600 ctctctccctatccctctcc 619 |||||||||||||||||||| Sbjct: 26860 ctctctccctatccctctcc 26879
>gb|AC165072.13| Mus musculus chromosome 18, clone RP23-345E17, complete sequence Length = 223019 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 600 ctctctccctatccctctcc 619 |||||||||||||||||||| Sbjct: 24320 ctctctccctatccctctcc 24339
>gb|AC134871.3| Mus musculus BAC clone RP23-183L19 from chromosome 3, complete sequence Length = 193373 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 601 tctctccctatccctctccc 620 |||||||||||||||||||| Sbjct: 84969 tctctccctatccctctccc 84988
>ref|XM_592235.2| PREDICTED: Bos taurus similar to G-protein coupled receptor TG1019 (LOC540198), mRNA Length = 1452 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 610 atccctctcccattccttctctct 633 ||||||||||| |||||||||||| Sbjct: 338 atccctctccccttccttctctct 361
>gb|AC166982.4| Mus musculus chromosome 18, clone RP24-377P23, complete sequence Length = 154269 Score = 40.1 bits (20), Expect = 9.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 602 ctctccctatccctctcccattccttctctct 633 |||||||| |||||||||| ||||||||||| Sbjct: 36796 ctctccctctccctctccctctccttctctct 36827
>gb|AC144621.3| Mus musculus BAC clone RP24-335I14 from chromosome 17, complete sequence Length = 207330 Score = 40.1 bits (20), Expect = 9.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 602 ctctccctatccctctcccattccttctctct 633 |||||||| |||||||||| ||||||||||| Sbjct: 91894 ctctccctctccctctccctctccttctctct 91925
>gb|AF235103.5| Homo sapiens chromosome 8 multiple clones map q24.3, complete sequence Length = 345524 Score = 40.1 bits (20), Expect = 9.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 602 ctctccctatccctctcccattccttctctct 633 ||||| ||||||||||| | |||||||||||| Sbjct: 336546 ctctctctatccctctctctttccttctctct 336515
>gb|AC161236.6| Mus musculus chromosome 3, clone RP23-403O4, complete sequence Length = 206652 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 602 ctctccctatccctctcccattcc 625 ||||||||||||||||||| |||| Sbjct: 68546 ctctccctatccctctccctttcc 68523
>gb|AC116591.4| Mus musculus BAC clone RP24-90K1 from chromosome 14, complete sequence Length = 237561 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 599 cctctctccctatccctctc 618 |||||||||||||||||||| Sbjct: 193721 cctctctccctatccctctc 193702
>gb|AC125132.4| Mus musculus BAC clone RP24-314B3 from chromosome 8, complete sequence Length = 190472 Score = 40.1 bits (20), Expect = 9.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 602 ctctccctatccctctcccattccttctctct 633 |||||||| |||||||||| ||||||||||| Sbjct: 125317 ctctccctctccctctccctctccttctctct 125348
>gb|AC122010.3| Mus musculus BAC clone RP24-349I15 from chromosome 8, complete sequence Length = 198118 Score = 40.1 bits (20), Expect = 9.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 602 ctctccctatccctctcccattccttctctct 633 |||||||| |||||||||| ||||||||||| Sbjct: 126611 ctctccctctccctctccctctccttctctct 126580
>gb|AC122188.4| Mus musculus BAC clone RP23-33B7 from chromosome 10, complete sequence Length = 217173 Score = 40.1 bits (20), Expect = 9.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 602 ctctccctatccctctcccattccttctctct 633 |||||||| |||||||||| ||||||||||| Sbjct: 187542 ctctccctctccctctccctctccttctctct 187511
>gb|AC141429.4| Mus musculus BAC clone RP23-56L6 from chromosome 18, complete sequence Length = 192527 Score = 40.1 bits (20), Expect = 9.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 602 ctctccctatccctctcccattccttctctct 633 |||||||| |||||||||| ||||||||||| Sbjct: 141912 ctctccctctccctctccctctccttctctct 141881
>gb|AC127341.3| Mus musculus BAC clone RP23-189L19 from chromosome 17, complete sequence Length = 213609 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 393 tttctggtgtcagaccaacacaag 416 |||||||||| ||||||||||||| Sbjct: 84691 tttctggtgtaagaccaacacaag 84714
>gb|AC126553.4| Mus musculus BAC clone RP23-448L16 from chromosome 18, complete sequence Length = 184463 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 611 tccctctcccattccttctctctg 634 |||||||||| ||||||||||||| Sbjct: 18127 tccctctccctttccttctctctg 18150
>gb|AC124720.3| Mus musculus BAC clone RP23-387F14 from chromosome 5, complete sequence Length = 193210 Score = 40.1 bits (20), Expect = 9.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 601 tctctccctatccctctcccattccttctctc 632 ||||||||| |||| ||||| ||||||||||| Sbjct: 139234 tctctccctctccccctccccttccttctctc 139203
>gb|AC122219.3| Mus musculus BAC clone RP23-119F18 from 3, complete sequence Length = 196563 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 601 tctctccctatccctctccc 620 |||||||||||||||||||| Sbjct: 189277 tctctccctatccctctccc 189296
>gb|AC112792.4| Mus musculus BAC clone RP23-192J17 from 18, complete sequence Length = 219784 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 611 tccctctcccattccttctctctg 634 |||||||||| ||||||||||||| Sbjct: 47605 tccctctccctttccttctctctg 47582
>gb|AC125217.3| Mus musculus BAC clone RP23-112D14 from 8, complete sequence Length = 191344 Score = 40.1 bits (20), Expect = 9.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 602 ctctccctatccctctcccattccttctctct 633 ||||||||||||||||| | ||||||||||| Sbjct: 124671 ctctccctatccctctctctatccttctctct 124640
>gb|AC131736.2| Mus musculus BAC clone RP23-104E2 from 18, complete sequence Length = 180201 Score = 40.1 bits (20), Expect = 9.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 602 ctctccctatccctctcccattccttctctct 633 |||||||| |||||||||| ||||||||||| Sbjct: 90777 ctctccctctccctctccctctccttctctct 90746
>gb|AC121582.3| Mus musculus BAC clone RP23-257I21 from 3, complete sequence Length = 201935 Score = 40.1 bits (20), Expect = 9.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 602 ctctccctatccctctcccattccttctctct 633 ||||||||||||||||||| ||| ||||||| Sbjct: 63620 ctctccctatccctctccctctccctctctct 63651
>gb|DQ459491.1| Cricetulus barabensis clone LB16microsatellite sequence Length = 589 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 242 gaaaagcttctgagagcctc 261 |||||||||||||||||||| Sbjct: 345 gaaaagcttctgagagcctc 364
>gb|AC114575.8| Mus musculus chromosome 12, clone RP23-152I9, complete sequence Length = 193164 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 614 ctctcccattccttctctct 633 |||||||||||||||||||| Sbjct: 158326 ctctcccattccttctctct 158307
>gb|AC114549.9| Mus musculus chromosome 19, clone RP24-216P17, complete sequence Length = 200425 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 600 ctctctccctatccctctcccatt 623 |||||||||| ||||||||||||| Sbjct: 180962 ctctctccctctccctctcccatt 180985
>gb|AC116669.7| Mus musculus chromosome 9, clone RP23-181I6, complete sequence Length = 191075 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 602 ctctccctatccctctcccattcc 625 |||||||| ||||||||||||||| Sbjct: 86094 ctctccctctccctctcccattcc 86071 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 602 ctctccctatccctctcccattcc 625 |||||||| ||||||||||||||| Sbjct: 85862 ctctccctctccctctcccattcc 85839
>gb|AC121524.6| Mus musculus chromosome 18, clone RP24-342F19, complete sequence Length = 148255 Score = 40.1 bits (20), Expect = 9.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 602 ctctccctatccctctcccattccttctctct 633 |||||||| |||||||||| ||||||||||| Sbjct: 129394 ctctccctctccctctccctctccttctctct 129363
>gb|AC137522.11| Medicago truncatula clone mth2-9h8, complete sequence Length = 117720 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 600 ctctctccctatccctctcc 619 |||||||||||||||||||| Sbjct: 64635 ctctctccctatccctctcc 64616
>emb|AL662788.7| Human DNA sequence from clone RP11-778P13 on chromosome 9 Contains part of the C9orf93 gene for chromosome 9 open reading frame 93, complete sequence Length = 106363 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 329 tttaggagaacctctcattgaaga 352 |||||||||| ||||||||||||| Sbjct: 99723 tttaggagaagctctcattgaaga 99746
>emb|AL591051.7| Human DNA sequence from clone RP11-613I8 on chromosome 6 Contains a CpG island, complete sequence Length = 128615 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 353 ttcctgcaagttgggcaaaa 372 |||||||||||||||||||| Sbjct: 20796 ttcctgcaagttgggcaaaa 20815
>emb|AL590395.4| Human DNA sequence from clone RP11-390H11 on chromosome 6, complete sequence Length = 154747 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 437 ccttcacaattttcattgtc 456 |||||||||||||||||||| Sbjct: 84917 ccttcacaattttcattgtc 84936
>emb|AL391423.16| Human DNA sequence from clone RP13-43J18 on chromosome 10 Contains part of the gene for a novel protein (FLJ32798), complete sequence Length = 114294 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 626 ttctctctgacaaacttcct 645 |||||||||||||||||||| Sbjct: 109009 ttctctctgacaaacttcct 108990
>emb|AL157890.11| Human DNA sequence from clone RP11-164I17 on chromosome 10 Contains the 5' end of the SORBS1 gene for sorbin and SH3 domain containing 1 (CAP, SH3D5, SORB1, SH3P12, ponsin, sh3p12) (KIAA1296, DKFZp586P1422, FLJ12406), complete sequence Length = 95681 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 169 gaacacactgttattaagga 188 |||||||||||||||||||| Sbjct: 17468 gaacacactgttattaagga 17487
>gb|AC107743.14| Mus musculus chromosome 1, clone RP23-326A12, complete sequence Length = 221645 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 602 ctctccctatccctctcccattcc 625 |||||||| ||||||||||||||| Sbjct: 86298 ctctccctctccctctcccattcc 86321
>emb|AL022345.2|HSY738F9 Human DNA sequence from clone XX-Y738F9 on chromosome 10 Contains the ZNF37B pseudogene for zinc finger protein 37b (KOX 21), a eukaryotic translation initiation factor 3 subunit 6 interacting protein (EIF3S6IP) pseudogene, the 3' end of the ZNF11B gene for zinc finger protein 11b (KOX 2), a novel gene (FLJ23327) and two CpG Islands, complete sequence Length = 146328 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 612 ccctctcccattccttctctctga 635 |||||||||||||||| ||||||| Sbjct: 74018 ccctctcccattccttatctctga 74041
>gb|AC160461.3| Mus musculus chromosome 15, clone RP23-174B9, complete sequence Length = 208877 Score = 40.1 bits (20), Expect = 9.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 599 cctctctccctatccctctcccattccttctc 630 ||||||||||| |||||||||| |||| |||| Sbjct: 103172 cctctctccctctccctctccctttccctctc 103203
>gb|AC162797.6| Mus musculus chromosome 8, clone RP23-293E17, complete sequence Length = 142444 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 600 ctctctccctatccctctcc 619 |||||||||||||||||||| Sbjct: 53978 ctctctccctatccctctcc 53997
>gb|AC163438.3| Mus musculus chromosome 8, clone RP23-278M23, complete sequence Length = 186102 Score = 40.1 bits (20), Expect = 9.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 602 ctctccctatccctctcccattccttctctct 633 |||||||| |||||||||| ||||||||||| Sbjct: 5431 ctctccctctccctctccctctccttctctct 5400
>emb|CR378681.1| Photobacterium profundum SS9 chromosome 2; segment 7/7 Length = 147669 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 638 aacttcctggctgcttggggtgta 661 ||||||||||||||| |||||||| Sbjct: 130800 aacttcctggctgctgggggtgta 130823
>emb|AL596025.22| Mouse DNA sequence from clone RP23-215H18 on chromosome 11 Contains a novel gene and the 3' end of a gene that is a possible ortholog of human dynein axonemal heavy polypeptide 9 (DNAH9), complete sequence Length = 190066 Score = 40.1 bits (20), Expect = 9.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 602 ctctccctatccctctcccattccttctctct 633 |||||||| |||||||||| ||||||||||| Sbjct: 108114 ctctccctctccctctccctctccttctctct 108145
>gb|AC132086.4| Mus musculus BAC clone RP24-556M16 from chromosome 10, complete sequence Length = 182855 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 602 ctctccctatccctctccca 621 |||||||||||||||||||| Sbjct: 150122 ctctccctatccctctccca 150141
>gb|AC139103.3| Homo sapiens chromosome 8, clone, complete sequence Length = 166920 Score = 40.1 bits (20), Expect = 9.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 602 ctctccctatccctctcccattccttctctct 633 ||||| ||||||||||| | |||||||||||| Sbjct: 45055 ctctctctatccctctctctttccttctctct 45086
>emb|AL669825.10| Mouse DNA sequence from clone RP23-327K3 on chromosome 11 Contains a cyclic AMP phosphoprotein (Arpp19) pseudogene, a heat shock protein (Hsp) pseudogene and a ribosomal protein S6 (Rps6) pseudogene, complete sequence Length = 199649 Score = 40.1 bits (20), Expect = 9.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 602 ctctccctatccctctcccattccttctctct 633 |||||||| ||||||||||| ||| ||||||| Sbjct: 128237 ctctccctctccctctcccaatccctctctct 128206
>gb|AC087815.6| Homo sapiens chromosome 8, clone RP5-1109M23, complete sequence Length = 77745 Score = 40.1 bits (20), Expect = 9.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 602 ctctccctatccctctcccattccttctctct 633 ||||| ||||||||||| | |||||||||||| Sbjct: 68767 ctctctctatccctctctctttccttctctct 68736
>gb|BC095338.1| Danio rerio zgc:110619, mRNA (cDNA clone MGC:110619 IMAGE:7163269), complete cds Length = 2137 Score = 40.1 bits (20), Expect = 9.4 Identities = 44/52 (84%) Strand = Plus / Minus Query: 462 caatcatatcaccatatgaaacctggtggcatatacaatatgtcggctcatt 513 ||||||| || || ||||||||||||||||| | ||||| || |||||||| Sbjct: 658 caatcatctctccgtatgaaacctggtggcagaggcaataggtgggctcatt 607
>ref|NM_001020468.1| Danio rerio zgc:110619 (zgc:110619), mRNA Length = 2137 Score = 40.1 bits (20), Expect = 9.4 Identities = 44/52 (84%) Strand = Plus / Minus Query: 462 caatcatatcaccatatgaaacctggtggcatatacaatatgtcggctcatt 513 ||||||| || || ||||||||||||||||| | ||||| || |||||||| Sbjct: 658 caatcatctctccgtatgaaacctggtggcagaggcaataggtgggctcatt 607
>dbj|BS000658.1| Pan troglodytes chromosome Y clone:PTBY-004A05, complete sequences Length = 15000 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 601 tctctccctatccctctccc 620 |||||||||||||||||||| Sbjct: 13924 tctctccctatccctctccc 13905
>dbj|BS000659.1| Pan troglodytes chromosome Y clone:PTBY-005K16, complete sequences Length = 106160 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 601 tctctccctatccctctccc 620 |||||||||||||||||||| Sbjct: 96058 tctctccctatccctctccc 96077
>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence Length = 23952694 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 601 tctctccctatccctctccc 620 |||||||||||||||||||| Sbjct: 19172417 tctctccctatccctctccc 19172436
>gb|AC166644.7| Mus musculus chromosome 1, clone RP23-375C6, complete sequence Length = 175851 Score = 40.1 bits (20), Expect = 9.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 602 ctctccctatccctctcccattccttctctct 633 |||||||| |||||||||||||| ||||||| Sbjct: 83720 ctctccctctccctctcccattctctctctct 83751
>ref|XM_689261.1| PREDICTED: Danio rerio similar to CG9293-PA, isoform A (LOC565996), partial mRNA Length = 876 Score = 40.1 bits (20), Expect = 9.4 Identities = 44/52 (84%) Strand = Plus / Minus Query: 462 caatcatatcaccatatgaaacctggtggcatatacaatatgtcggctcatt 513 ||||||| || || ||||||||||||||||| | ||||| || |||||||| Sbjct: 142 caatcatctctccgtatgaaacctggtggcagaggcaataggtgggctcatt 91
>gb|AC113815.6| Rattus norvegicus BAC CH230-221C20 (Children's Hospital Oakland Research Institute Rat (BN/SsNHsd/MCW) BAC library) complete sequence Length = 229621 Score = 40.1 bits (20), Expect = 9.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 602 ctctccctatccctctcccattccttctctct 633 |||||||| |||||||||| ||||||||||| Sbjct: 32216 ctctccctctccctctccctctccttctctct 32185
>gb|AC073529.15| Homo sapiens X BAC RP11-120D5 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 78659 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 601 tctctccctatccctctccc 620 |||||||||||||||||||| Sbjct: 21882 tctctccctatccctctccc 21863
>emb|BX465196.11| Mouse DNA sequence from clone RP23-459K15 on chromosome X, complete sequence Length = 184607 Score = 40.1 bits (20), Expect = 9.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 602 ctctccctatccctctcccattccttctctct 633 |||||||| ||||||||| |||||||||||| Sbjct: 131760 ctctccctccccctctccctttccttctctct 131791
>gb|AC156949.9| Mus musculus 10 BAC RP24-347J14 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 149183 Score = 40.1 bits (20), Expect = 9.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 599 cctctctccctatccctctcccattccttctc 630 ||||||||||| |||||||||| |||||||| Sbjct: 57718 cctctctccctctccctctccctctccttctc 57687
>gb|AC152004.4| Pan troglodytes FOSMID clone CH1251-1187E2 from chromosome y, complete sequence Length = 40597 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 601 tctctccctatccctctccc 620 |||||||||||||||||||| Sbjct: 6087 tctctccctatccctctccc 6106
>gb|AC093650.5| Homo sapiens BAC clone RP11-364I15 from 2, complete sequence Length = 83055 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 360 aagttgggcaaaaccatttc 379 |||||||||||||||||||| Sbjct: 20441 aagttgggcaaaaccatttc 20422
>ref|XM_233620.3| PREDICTED: Rattus norvegicus similar to PR-domain zinc finger protein 2 (Retinoblastoma protein-interacting zinc-finger protein) (Zinc finger protein RIZ) (LOC313678), mRNA Length = 5211 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 603 tctccctatccctctcccattcct 626 ||||||| |||||||||||||||| Sbjct: 3125 tctccctctccctctcccattcct 3148
>gb|AC092569.2| Homo sapiens BAC clone CTD-2024L7 from 2, complete sequence Length = 139880 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 444 aattttcattgtcacaagca 463 |||||||||||||||||||| Sbjct: 26725 aattttcattgtcacaagca 26744
>gb|AC109146.26| Mus musculus chromosome 8, clone RP23-54G23, complete sequence Length = 197868 Score = 40.1 bits (20), Expect = 9.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 602 ctctccctatccctctcccattccttctctct 633 |||||||| |||||||||| ||||||||||| Sbjct: 96713 ctctccctctccctctccctctccttctctct 96682
>emb|AL929126.25| Mouse DNA sequence from clone RP23-424N5 on chromosome 2, complete sequence Length = 151556 Score = 40.1 bits (20), Expect = 9.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 602 ctctccctatccctctcccattccttctctct 633 |||||||| |||||||||| ||||||||||| Sbjct: 19671 ctctccctctccctctccctctccttctctct 19640
>emb|CR388038.9| Zebrafish DNA sequence from clone CH211-163F20 in linkage group 19, complete sequence Length = 79031 Score = 40.1 bits (20), Expect = 9.4 Identities = 44/52 (84%) Strand = Plus / Minus Query: 462 caatcatatcaccatatgaaacctggtggcatatacaatatgtcggctcatt 513 ||||||| || || ||||||||||||||||| | ||||| || |||||||| Sbjct: 53773 caatcatctctccgtatgaaacctggtggcagaggcaataggtgggctcatt 53722
>gb|AC153824.9| Mus musculus 10 BAC RP23-53D13 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 233119 Score = 40.1 bits (20), Expect = 9.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 599 cctctctccctatccctctcccattccttctc 630 ||||||||||| |||||||||| |||||||| Sbjct: 174065 cctctctccctctccctctccctctccttctc 174034
>gb|AC101745.9| Mus musculus chromosome 19, clone RP23-473I8, complete sequence Length = 174866 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 600 ctctctccctatccctctcccatt 623 |||||||||| ||||||||||||| Sbjct: 70106 ctctctccctctccctctcccatt 70129
>gb|AC171401.8| Mus musculus chromosome 7, clone RP23-174D7, complete sequence Length = 211696 Score = 40.1 bits (20), Expect = 9.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 602 ctctccctatccctctcccattccttctctct 633 |||||||| |||||||||| ||||||||||| Sbjct: 136414 ctctccctctccctctccctctccttctctct 136383
>dbj|AP005976.2| Homo sapiens genomic DNA, chromosome 8qtel, clone: KB1585H8, complete sequence Length = 226221 Score = 40.1 bits (20), Expect = 9.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 602 ctctccctatccctctcccattccttctctct 633 ||||| ||||||||||| | |||||||||||| Sbjct: 185610 ctctctctatccctctctctttccttctctct 185579
>gb|AY609390.1| Sus scrofa clone Clu_100775.scr.msk.p1.Contig1, mRNA sequence Length = 1430 Score = 40.1 bits (20), Expect = 9.4 Identities = 59/72 (81%) Strand = Plus / Minus Query: 448 ttcattgtcacaagcaatcatatcaccatatgaaacctggtggcatatacaatatgtcgg 507 |||||||||||| ||||||| || ||||| || || |||| |||| ||||||||| || Sbjct: 1129 ttcattgtcacatccaatcatttccccataagacacttggttacataaacaatatgtagg 1070 Query: 508 ctcatttggatc 519 ||||| ||||| Sbjct: 1069 ttcattgggatc 1058
>emb|AL772305.15| Mouse DNA sequence from clone RP23-86E8 on chromosome 4, complete sequence Length = 260935 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 159 accaaaaatagaacacactg 178 |||||||||||||||||||| Sbjct: 192912 accaaaaatagaacacactg 192893
>gb|AC114627.8| Mus musculus chromosome 3, clone RP24-108F9, complete sequence Length = 152152 Score = 40.1 bits (20), Expect = 9.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 599 cctctctccctatccctctcccattccttctc 630 ||||||||||| |||||||||| |||||||| Sbjct: 100883 cctctctccctctccctctccctctccttctc 100852
>gb|AC140491.4| Mus musculus BAC clone RP24-136G21 from 9, complete sequence Length = 163404 Score = 40.1 bits (20), Expect = 9.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 602 ctctccctatccctctcccattccttctctct 633 |||||||| |||||||||| ||||||||||| Sbjct: 69241 ctctccctctccctctccctctccttctctct 69210
>gb|AC146596.4| Mus musculus BAC clone RP24-175L7 from 13, complete sequence Length = 163780 Score = 40.1 bits (20), Expect = 9.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 602 ctctccctatccctctcccattccttctctct 633 |||||||| |||||||||| ||||||||||| Sbjct: 46110 ctctccctctccctctccctctccttctctct 46141
>gb|AC139317.4| Mus musculus BAC clone RP24-495N6 from 15, complete sequence Length = 182415 Score = 40.1 bits (20), Expect = 9.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 602 ctctccctatccctctcccattccttctctct 633 |||||||| |||||||||| ||||||||||| Sbjct: 99408 ctctccctctccctctccctctccttctctct 99439
>gb|AC140410.3| Mus musculus BAC clone RP23-141J11 from 10, complete sequence Length = 205197 Score = 40.1 bits (20), Expect = 9.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 602 ctctccctatccctctcccattccttctctct 633 |||||||| |||||||||| ||||||||||| Sbjct: 92246 ctctccctctccctctccctctccttctctct 92277
>gb|AC141895.4| Mus musculus BAC clone RP23-299L22 from 10, complete sequence Length = 178358 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 602 ctctccctatccctctccca 621 |||||||||||||||||||| Sbjct: 152753 ctctccctatccctctccca 152734
>gb|AC134604.5| Mus musculus BAC clone RP23-296I5 from 12, complete sequence Length = 203284 Score = 40.1 bits (20), Expect = 9.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 602 ctctccctatccctctcccattccttctctct 633 |||||||| |||||||||| ||||||||||| Sbjct: 142604 ctctccctctccctctccctctccttctctct 142635
>gb|AC144947.4| Mus musculus BAC clone RP23-319M19 from 1, complete sequence Length = 185575 Score = 40.1 bits (20), Expect = 9.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 602 ctctccctatccctctcccattccttctctct 633 |||||||| |||||||||| ||||||||||| Sbjct: 64138 ctctccctctccctctccctctccttctctct 64107
>emb|BX001062.7| Mouse DNA sequence from clone RP23-275J15 on chromosome X, complete sequence Length = 154573 Score = 40.1 bits (20), Expect = 9.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 602 ctctccctatccctctcccattccttctctct 633 |||||||| ||||||||| |||||||||||| Sbjct: 106015 ctctccctccccctctccctttccttctctct 106046
>emb|CT009512.6| Mouse DNA sequence from clone RP23-94B13 on chromosome 14, complete sequence Length = 232468 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 599 cctctctccctatccctctc 618 |||||||||||||||||||| Sbjct: 72226 cctctctccctatccctctc 72207
>gb|U69729.1|HSU69729 Human Xp22 cosmid U110E1, complete sequence Length = 44185 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 601 tctctccctatccctctccc 620 |||||||||||||||||||| Sbjct: 22977 tctctccctatccctctccc 22996
>emb|AL805906.7| Mouse DNA sequence from clone RP23-113J20 on chromosome 4, complete sequence Length = 176416 Score = 40.1 bits (20), Expect = 9.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 602 ctctccctatccctctcccattccttctctct 633 |||||||| |||||||||| ||||||||||| Sbjct: 163708 ctctccctctccctctccctctccttctctct 163739
>emb|AL928992.7| Mouse DNA sequence from clone RP23-208O9 on chromosome 2, complete sequence Length = 136064 Score = 40.1 bits (20), Expect = 9.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 602 ctctccctatccctctcccattccttctctct 633 |||||||| |||||||||| ||||||||||| Sbjct: 99101 ctctccctctccctctccctctccttctctct 99132
>gb|AC160120.2| Mus musculus BAC clone RP23-407B7 from chromosome 14, complete sequence Length = 202981 Score = 40.1 bits (20), Expect = 9.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 602 ctctccctatccctctcccattccttctctct 633 |||||||| |||||||||| ||||||||||| Sbjct: 102986 ctctccctctccctctccctctccttctctct 102955
>gb|AC170995.4| Mus musculus chromosome 7, clone wi1-88C3, complete sequence Length = 39791 Score = 40.1 bits (20), Expect = 9.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 602 ctctccctatccctctcccattccttctctct 633 |||||||| |||||||||| ||||||||||| Sbjct: 7746 ctctccctctccctctccctctccttctctct 7777
>gb|U17837.1|RRU17837 Rattus sp. zinc finger protein RIZ mRNA, complete cds Length = 6152 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 603 tctccctatccctctcccattcct 626 ||||||| |||||||||||||||| Sbjct: 3214 tctccctctccctctcccattcct 3237
>emb|AL731552.11| Mouse DNA sequence from clone RP23-113K24 on chromosome 2, complete sequence Length = 203304 Score = 40.1 bits (20), Expect = 9.4 Identities = 32/36 (88%) Strand = Plus / Plus Query: 599 cctctctccctatccctctcccattccttctctctg 634 ||||||||||| |||||||||| ||| |||||||| Sbjct: 18435 cctctctccctctccctctccctctccctctctctg 18470
>emb|AL662925.12| Mouse DNA sequence from clone RP23-226M12 on chromosome X, complete sequence Length = 199774 Score = 40.1 bits (20), Expect = 9.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 599 cctctctccctatccctctcccattccttctc 630 ||||||||||| |||||||||| |||| |||| Sbjct: 194332 cctctctccctctccctctccctttccctctc 194363
>emb|AL133167.4|CNS01DU1 Human chromosome 14 DNA sequence BAC R-185P18 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 163096 Score = 40.1 bits (20), Expect = 9.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 593 tccatacctctctccctatccctctccc 620 ||||| ||||||||||| |||||||||| Sbjct: 63298 tccatccctctctccctctccctctccc 63271 Score = 40.1 bits (20), Expect = 9.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 593 tccatacctctctccctatccctctccc 620 ||||| ||||||||||| |||||||||| Sbjct: 63082 tccatccctctctccctctccctctccc 63055
>emb|AL669976.11| Mouse DNA sequence from clone RP23-15J3 on chromosome X, complete sequence Length = 227762 Score = 40.1 bits (20), Expect = 9.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 602 ctctccctatccctctcccattccttctctct 633 |||||||| ||||||||| |||||||||||| Sbjct: 225726 ctctccctccccctctccctttccttctctct 225695
>emb|AL731871.12| Mouse DNA sequence from clone RP23-111J19 on chromosome 2, complete sequence Length = 195003 Score = 40.1 bits (20), Expect = 9.4 Identities = 32/36 (88%) Strand = Plus / Plus Query: 602 ctctccctatccctctcccattccttctctctgaca 637 |||||||| |||||||||| ||| ||||||||||| Sbjct: 142521 ctctccctctccctctccctctccctctctctgaca 142556
>emb|AL671975.12| Mouse DNA sequence from clone RP23-25O15 on chromosome X, complete sequence Length = 231530 Score = 40.1 bits (20), Expect = 9.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 602 ctctccctatccctctcccattccttctctct 633 |||||||| |||||||||| ||||||||||| Sbjct: 206393 ctctccctctccctctccctctccttctctct 206362
>gb|M38396.1|DYGGTPBP Discopyge ommata GTP-binding protein mRNA, complete cds Length = 840 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 612 ccctctcccattccttctct 631 |||||||||||||||||||| Sbjct: 732 ccctctcccattccttctct 751 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,761,322 Number of Sequences: 3902068 Number of extensions: 6761322 Number of successful extensions: 130515 Number of sequences better than 10.0: 181 Number of HSP's better than 10.0 without gapping: 181 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 129935 Number of HSP's gapped (non-prelim): 573 length of query: 686 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 663 effective length of database: 17,143,297,704 effective search space: 11366006377752 effective search space used: 11366006377752 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
