ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags10g14
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DME_ARATH (Q8LK56) Transcriptional activator DEMETER (DNA glycos... 57 3e-08
2ROS1_ARATH (Q9SJQ6) ROS1 protein (Repressor of silencing 1) (DEM... 54 4e-07
3DML3_ARATH (O49498) DEMETER-like protein 3 35 0.16
4HAP2_HAEIN (P45387) Adhesion and penetration protein precursor (... 31 3.0

>DME_ARATH (Q8LK56) Transcriptional activator DEMETER (DNA glycosylase-related|
            protein DME)
          Length = 1729

 Score = 57.4 bits (137), Expect = 3e-08
 Identities = 25/33 (75%), Positives = 29/33 (87%)
 Frame = -2

Query: 587  GFVCVRGFDRTSRAPRPLYARLHFPASKIIRNK 489
            GFVCVRGF++ +RAPRPL ARLHFPASK+  NK
Sbjct: 1696 GFVCVRGFEQKTRAPRPLMARLHFPASKLKNNK 1728



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>ROS1_ARATH (Q9SJQ6) ROS1 protein (Repressor of silencing 1) (DEMETER-like|
            protein 1)
          Length = 1393

 Score = 53.5 bits (127), Expect = 4e-07
 Identities = 22/29 (75%), Positives = 26/29 (89%)
 Frame = -2

Query: 587  GFVCVRGFDRTSRAPRPLYARLHFPASKI 501
            G+VCVRGFDR +R P+PL ARLHFPASK+
Sbjct: 1357 GYVCVRGFDRKTRGPKPLIARLHFPASKL 1385



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>DML3_ARATH (O49498) DEMETER-like protein 3|
          Length = 1044

 Score = 35.0 bits (79), Expect = 0.16
 Identities = 14/25 (56%), Positives = 17/25 (68%)
 Frame = -2

Query: 587  GFVCVRGFDRTSRAPRPLYARLHFP 513
            GF+C+R FDR  R P+ L  RLH P
Sbjct: 1006 GFLCLRAFDRKQRDPKELVRRLHTP 1030



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>HAP2_HAEIN (P45387) Adhesion and penetration protein precursor (EC 3.4.21.-)|
          Length = 1394

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 91  NNMNNFEWMTSPMYNSWFKSHENNKQNG 174
           NN+N  ++     YN WF   + NK NG
Sbjct: 551 NNINKLDYRKEIAYNGWFGETDKNKHNG 578


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,181,783
Number of Sequences: 219361
Number of extensions: 1638928
Number of successful extensions: 3314
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3311
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5101629520
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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