| Clone Name | rbags10g12 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AF354659.1| Triticum aestivum isolate GCTG/CTC2 scab resistance-linked AFLP fragment gene sequence Length = 307 Score = 301 bits (152), Expect = 2e-78 Identities = 218/240 (90%), Gaps = 5/240 (2%) Strand = Plus / Plus Query: 95 agagaagatgtggctatgccttgagcatccgcaggtagtcttcgattatggacatggctg 154 |||||||| | ||||| ||||| ||||||| |||||||||||||||||||||||| |||| Sbjct: 51 agagaagacgaggctacgccttcagcatccccaggtagtcttcgattatggacatagctg 110 Query: 155 acgagcggtacccagagccgaaaaggttgtagtgattcaggtagtggtagagtaaataca 214 | ||||||||||||||||| ||||||||||||||||||||||||||||| || | ||||| Sbjct: 111 aggagcggtacccagagccaaaaaggttgtagtgattcaggtagtggtataggagataca 170 Query: 215 ggtccctccttttctcaaagcctggctgtttcggcatcacctgaataacagttcagcatg 274 |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||| Sbjct: 171 ggtccctcctcttctcaaagcctggctgcttcggcatcacctgaataacagttcagtatg 230 Query: 275 ttacatttaacttttcctttccatcaggacagtaaattgagaggccgacccggcacaaga 334 |||||| ||||| ||||||||||||||||||||||||||||| |||| |||||||| Sbjct: 231 ttacatgtaact-----tttccatcaggacagtaaattgagaggcccacccagcacaaga 285
>gb|AC134236.4| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0056G13, complete sequence Length = 148011 Score = 170 bits (86), Expect = 4e-39 Identities = 137/154 (88%) Strand = Plus / Minus Query: 107 gctatgccttgagcatccgcaggtagtcttcgattatggacatggctgacgagcggtacc 166 |||| ||||| ||||||| || |||||| ||||| |||||||| ||||| |||||||||| Sbjct: 113058 gctaagccttcagcatcctcaagtagtcatcgataatggacatagctgatgagcggtacc 112999 Query: 167 cagagccgaaaaggttgtagtgattcaggtagtggtagagtaaatacaggtccctccttt 226 | ||||| ||||| |||||||| ||||| |||||||| || | ||||||||||||||| | Sbjct: 112998 cggagccaaaaagattgtagtggttcagatagtggtacagaagatacaggtccctcctct 112939 Query: 227 tctcaaagcctggctgtttcggcatcacctgaat 260 |||||||||||||||||||||||||||||||||| Sbjct: 112938 tctcaaagcctggctgtttcggcatcacctgaat 112905 Score = 85.7 bits (43), Expect = 2e-13 Identities = 70/79 (88%) Strand = Plus / Minus Query: 523 acctcgaaataggagctgtagaaatcccctccgaatccagcgcaccatgacatcccaaac 582 ||||| ||||||||||| ||||| ||||| || |||||||||||||||||||| |||||| Sbjct: 112094 acctcaaaataggagctatagaattcccccccaaatccagcgcaccatgacataccaaac 112035 Query: 583 tctgcttcattgtgtccat 601 || ||||| ||||| |||| Sbjct: 112034 tccgcttcgttgtggccat 112016 Score = 48.1 bits (24), Expect = 0.037 Identities = 45/52 (86%) Strand = Plus / Minus Query: 602 agtagcatgctggatccaatattacaggatctccattagtatcggagcttat 653 ||||||| ||||| |||||||| ||||| || ||||||||||| || ||||| Sbjct: 111677 agtagcaagctgggtccaatataacaggttcaccattagtatcagaacttat 111626
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 170 bits (86), Expect = 4e-39 Identities = 137/154 (88%) Strand = Plus / Minus Query: 107 gctatgccttgagcatccgcaggtagtcttcgattatggacatggctgacgagcggtacc 166 |||| ||||| ||||||| || |||||| ||||| |||||||| ||||| |||||||||| Sbjct: 957861 gctaagccttcagcatcctcaagtagtcatcgataatggacatagctgatgagcggtacc 957802 Query: 167 cagagccgaaaaggttgtagtgattcaggtagtggtagagtaaatacaggtccctccttt 226 | ||||| ||||| |||||||| ||||| |||||||| || | ||||||||||||||| | Sbjct: 957801 cggagccaaaaagattgtagtggttcagatagtggtacagaagatacaggtccctcctct 957742 Query: 227 tctcaaagcctggctgtttcggcatcacctgaat 260 |||||||||||||||||||||||||||||||||| Sbjct: 957741 tctcaaagcctggctgtttcggcatcacctgaat 957708 Score = 85.7 bits (43), Expect = 2e-13 Identities = 70/79 (88%) Strand = Plus / Minus Query: 523 acctcgaaataggagctgtagaaatcccctccgaatccagcgcaccatgacatcccaaac 582 ||||| ||||||||||| ||||| ||||| || |||||||||||||||||||| |||||| Sbjct: 956897 acctcaaaataggagctatagaattcccccccaaatccagcgcaccatgacataccaaac 956838 Query: 583 tctgcttcattgtgtccat 601 || ||||| ||||| |||| Sbjct: 956837 tccgcttcgttgtggccat 956819 Score = 48.1 bits (24), Expect = 0.037 Identities = 45/52 (86%) Strand = Plus / Minus Query: 602 agtagcatgctggatccaatattacaggatctccattagtatcggagcttat 653 ||||||| ||||| |||||||| ||||| || ||||||||||| || ||||| Sbjct: 956480 agtagcaagctgggtccaatataacaggttcaccattagtatcagaacttat 956429
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 170 bits (86), Expect = 4e-39 Identities = 137/154 (88%) Strand = Plus / Minus Query: 107 gctatgccttgagcatccgcaggtagtcttcgattatggacatggctgacgagcggtacc 166 |||| ||||| ||||||| || |||||| ||||| |||||||| ||||| |||||||||| Sbjct: 957859 gctaagccttcagcatcctcaagtagtcatcgataatggacatagctgatgagcggtacc 957800 Query: 167 cagagccgaaaaggttgtagtgattcaggtagtggtagagtaaatacaggtccctccttt 226 | ||||| ||||| |||||||| ||||| |||||||| || | ||||||||||||||| | Sbjct: 957799 cggagccaaaaagattgtagtggttcagatagtggtacagaagatacaggtccctcctct 957740 Query: 227 tctcaaagcctggctgtttcggcatcacctgaat 260 |||||||||||||||||||||||||||||||||| Sbjct: 957739 tctcaaagcctggctgtttcggcatcacctgaat 957706 Score = 85.7 bits (43), Expect = 2e-13 Identities = 70/79 (88%) Strand = Plus / Minus Query: 523 acctcgaaataggagctgtagaaatcccctccgaatccagcgcaccatgacatcccaaac 582 ||||| ||||||||||| ||||| ||||| || |||||||||||||||||||| |||||| Sbjct: 956895 acctcaaaataggagctatagaattcccccccaaatccagcgcaccatgacataccaaac 956836 Query: 583 tctgcttcattgtgtccat 601 || ||||| ||||| |||| Sbjct: 956835 tccgcttcgttgtggccat 956817 Score = 48.1 bits (24), Expect = 0.037 Identities = 45/52 (86%) Strand = Plus / Minus Query: 602 agtagcatgctggatccaatattacaggatctccattagtatcggagcttat 653 ||||||| ||||| |||||||| ||||| || ||||||||||| || ||||| Sbjct: 956478 agtagcaagctgggtccaatataacaggttcaccattagtatcagaacttat 956427
>gb|AY110314.1| Zea mays CL24410_-1 mRNA sequence Length = 616 Score = 168 bits (85), Expect = 1e-38 Identities = 121/133 (90%) Strand = Plus / Plus Query: 127 aggtagtcttcgattatggacatggctgacgagcggtacccagagccgaaaaggttgtag 186 ||||||||||||||||||||||| ||||| || ||||| |||||||| || || |||||| Sbjct: 89 aggtagtcttcgattatggacatagctgatgaacggtagccagagccaaagagattgtag 148 Query: 187 tgattcaggtagtggtagagtaaatacaggtccctccttttctcaaagcctggctgtttc 246 |||||||||||||||||||| | ||| ||||||||||| |||||||| |||||||||||| Sbjct: 149 tgattcaggtagtggtagaggagatagaggtccctcctcttctcaaaccctggctgtttc 208 Query: 247 ggcatcacctgaa 259 ||||||||||||| Sbjct: 209 ggcatcacctgaa 221 Score = 73.8 bits (37), Expect = 6e-10 Identities = 64/73 (87%) Strand = Plus / Plus Query: 529 aaataggagctgtagaaatcccctccgaatccagcgcaccatgacatcccaaactctgct 588 ||||||| | ||||||| ||||| || |||||||| ||||| ||||||||||||||||| Sbjct: 221 aaataggcgttgtagaagtccccaccaaatccagcacaccaggacatcccaaactctgcc 280 Query: 589 tcattgtgtccat 601 || |||||||||| Sbjct: 281 tcgttgtgtccat 293 Score = 56.0 bits (28), Expect = 2e-04 Identities = 46/52 (88%) Strand = Plus / Plus Query: 602 agtagcatgctggatccaatattacaggatctccattagtatcggagcttat 653 ||||||| || |||||||||||||||||||| ||||| |||| |||||||| Sbjct: 394 agtagcaagcaggatccaatattacaggatccccattgctatcagagcttat 445
>dbj|AK066948.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013089A07, full insert sequence Length = 1335 Score = 163 bits (82), Expect = 9e-37 Identities = 133/150 (88%) Strand = Plus / Minus Query: 107 gctatgccttgagcatccgcaggtagtcttcgattatggacatggctgacgagcggtacc 166 |||| ||||| ||||||| || |||||| ||||| |||||||| ||||| |||||||||| Sbjct: 1099 gctaagccttcagcatcctcaagtagtcatcgataatggacatagctgatgagcggtacc 1040 Query: 167 cagagccgaaaaggttgtagtgattcaggtagtggtagagtaaatacaggtccctccttt 226 | ||||| ||||| |||||||| ||||| |||||||| || | ||||||||||||||| | Sbjct: 1039 cggagccaaaaagattgtagtggttcagatagtggtacagaagatacaggtccctcctct 980 Query: 227 tctcaaagcctggctgtttcggcatcacct 256 |||||||||||||||||||||||||||||| Sbjct: 979 tctcaaagcctggctgtttcggcatcacct 950 Score = 133 bits (67), Expect = 8e-28 Identities = 115/131 (87%) Strand = Plus / Minus Query: 523 acctcgaaataggagctgtagaaatcccctccgaatccagcgcaccatgacatcccaaac 582 ||||| ||||||||||| ||||| ||||| || |||||||||||||||||||| |||||| Sbjct: 953 acctcaaaataggagctatagaattcccccccaaatccagcgcaccatgacataccaaac 894 Query: 583 tctgcttcattgtgtccatagtagcatgctggatccaatattacaggatctccattagta 642 || ||||| ||||| ||||||||||| ||||| |||||||| ||||| || ||||||||| Sbjct: 893 tccgcttcgttgtggccatagtagcaagctgggtccaatataacaggttcaccattagta 834 Query: 643 tcggagcttat 653 || || ||||| Sbjct: 833 tcagaacttat 823
>gb|AC183426.2| Populus trichocarpa clone Pop1-45L17, complete sequence Length = 50019 Score = 65.9 bits (33), Expect = 2e-07 Identities = 66/77 (85%) Strand = Plus / Plus Query: 181 ttgtagtgattcaggtagtggtagagtaaatacaggtccctccttttctcaaagcctggc 240 ||||| |||||||||||||| || || ||||| | || ||||| |||||||||||||| Sbjct: 10778 ttgtaatgattcaggtagtgatacagcaaatagatctctctcctcttctcaaagcctggt 10837 Query: 241 tgtttcggcatcacctg 257 ||||| ||||||||||| Sbjct: 10838 tgtttgggcatcacctg 10854 Score = 63.9 bits (32), Expect = 6e-07 Identities = 47/52 (90%) Strand = Plus / Plus Query: 550 cctccgaatccagcgcaccatgacatcccaaactctgcttcattgtgtccat 601 ||||| || ||||| ||||||||||| ||||| ||||||||||||||||||| Sbjct: 11256 cctccaaaaccagcacaccatgacattccaaattctgcttcattgtgtccat 11307
>ref|NM_115972.3| Arabidopsis thaliana kinase AT3G61080 mRNA, complete cds Length = 1219 Score = 50.1 bits (25), Expect = 0.009 Identities = 94/117 (80%) Strand = Plus / Minus Query: 115 ttgagcatccgcaggtagtcttcgattatggacatggctgacgagcggtacccagagccg 174 ||||||||||| || || || ||||| || ||||| || || || ||||| || ||||| Sbjct: 996 ttgagcatccgtagataatcatcgatgattgacatcgcagatgatcggtagcccgagcca 937 Query: 175 aaaaggttgtagtgattcaggtagtggtagagtaaatacaggtccctccttttctca 231 || ||||| || || |||| ||| || ||||| |||||||| |||||||| |||||| Sbjct: 936 aacaggttataatggttcaagtaatgatagagcaaatacagatccctcctcttctca 880
>gb|AY117356.1| Arabidopsis thaliana unknown protein (At3g61080) mRNA, complete cds Length = 1012 Score = 50.1 bits (25), Expect = 0.009 Identities = 94/117 (80%) Strand = Plus / Minus Query: 115 ttgagcatccgcaggtagtcttcgattatggacatggctgacgagcggtacccagagccg 174 ||||||||||| || || || ||||| || ||||| || || || ||||| || ||||| Sbjct: 974 ttgagcatccgtagataatcatcgatgattgacatcgcagatgatcggtagcccgagcca 915 Query: 175 aaaaggttgtagtgattcaggtagtggtagagtaaatacaggtccctccttttctca 231 || ||||| || || |||| ||| || ||||| |||||||| |||||||| |||||| Sbjct: 914 aacaggttataatggttcaagtaatgatagagcaaatacagatccctcctcttctca 858
>gb|AY070080.1| Arabidopsis thaliana unknown protein (At3g61080) mRNA, complete cds Length = 1234 Score = 50.1 bits (25), Expect = 0.009 Identities = 94/117 (80%) Strand = Plus / Minus Query: 115 ttgagcatccgcaggtagtcttcgattatggacatggctgacgagcggtacccagagccg 174 ||||||||||| || || || ||||| || ||||| || || || ||||| || ||||| Sbjct: 995 ttgagcatccgtagataatcatcgatgattgacatcgcagatgatcggtagcccgagcca 936 Query: 175 aaaaggttgtagtgattcaggtagtggtagagtaaatacaggtccctccttttctca 231 || ||||| || || |||| ||| || ||||| |||||||| |||||||| |||||| Sbjct: 935 aacaggttataatggttcaagtaatgatagagcaaatacagatccctcctcttctca 879
>emb|AL358732.1|ATT27I15 Arabidopsis thaliana DNA chromosome 3, BAC clone T27I15 Length = 112584 Score = 50.1 bits (25), Expect = 0.009 Identities = 94/117 (80%) Strand = Plus / Minus Query: 115 ttgagcatccgcaggtagtcttcgattatggacatggctgacgagcggtacccagagccg 174 ||||||||||| || || || ||||| || ||||| || || || ||||| || ||||| Sbjct: 106672 ttgagcatccgtagataatcatcgatgattgacatcgcagatgatcggtagcccgagcca 106613 Query: 175 aaaaggttgtagtgattcaggtagtggtagagtaaatacaggtccctccttttctca 231 || ||||| || || |||| ||| || ||||| |||||||| |||||||| |||||| Sbjct: 106612 aacaggttataatggttcaagtaatgatagagcaaatacagatccctcctcttctca 106556
>emb|BX822693.1|CNS0A5VF Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB58ZF12 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1340 Score = 50.1 bits (25), Expect = 0.009 Identities = 94/117 (80%) Strand = Plus / Minus Query: 115 ttgagcatccgcaggtagtcttcgattatggacatggctgacgagcggtacccagagccg 174 ||||||||||| || || || ||||| || ||||| || || || ||||| || ||||| Sbjct: 1150 ttgagcatccgtagataatcatcgatgattgacatcgcagatgatcggtagcccgagcca 1091 Query: 175 aaaaggttgtagtgattcaggtagtggtagagtaaatacaggtccctccttttctca 231 || ||||| || || |||| ||| || ||||| |||||||| |||||||| |||||| Sbjct: 1090 aacaggttataatggttcaagtaatgatagagcaaatacagatccctcctcttctca 1034
>emb|AL079300.11|HSBK109D1 Human DNA sequence from clone CTA-109D1 on chromosome 22, complete sequence Length = 73844 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Minus Query: 344 taaacatgaagagagaaagaga 365 |||||||||||||||||||||| Sbjct: 65215 taaacatgaagagagaaagaga 65194
>emb|AL161532.2|ATCHRIV32 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 32 Length = 198788 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Minus Query: 35 tcatacatgcatgccattgtgg 56 |||||||||||||||||||||| Sbjct: 186776 tcatacatgcatgccattgtgg 186755
>emb|AL078606.1|ATT26M18 Arabidopsis thaliana DNA chromosome 4, BAC clone T26M18 (ESSA project) Length = 90824 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Minus Query: 35 tcatacatgcatgccattgtgg 56 |||||||||||||||||||||| Sbjct: 49476 tcatacatgcatgccattgtgg 49455
>gb|AC163614.4| Mus musculus BAC clone RP23-102K8 from chromosome 1, complete sequence Length = 201646 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Plus Query: 349 atgaagagagaaagagaagcag 370 |||||||||||||||||||||| Sbjct: 48694 atgaagagagaaagagaagcag 48715
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Plus Query: 116 tgagcatccgcaggtagtcttc 137 |||||||||||||||||||||| Sbjct: 26545066 tgagcatccgcaggtagtcttc 26545087
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Plus Query: 116 tgagcatccgcaggtagtcttc 137 |||||||||||||||||||||| Sbjct: 26473235 tgagcatccgcaggtagtcttc 26473256
>gb|AC161420.6| Mus musculus BAC clone RP24-358O9 from chromosome 1, complete sequence Length = 200763 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Plus Query: 349 atgaagagagaaagagaagcag 370 |||||||||||||||||||||| Sbjct: 160807 atgaagagagaaagagaagcag 160828
>emb|AL713945.5|CNS07YPO Oryza sativa chromosome 12, . BAC OJ1727_H11 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 85710 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Plus Query: 116 tgagcatccgcaggtagtcttc 137 |||||||||||||||||||||| Sbjct: 15071 tgagcatccgcaggtagtcttc 15092
>gb|AC147447.3| Gallus gallus BAC clone CH261-9P3 from chromosome unknown, complete sequence Length = 162933 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Minus Query: 349 atgaagagagaaagagaagcag 370 |||||||||||||||||||||| Sbjct: 49401 atgaagagagaaagagaagcag 49380
>gb|AC110173.11| Mus musculus chromosome 8, clone RP24-396D19, complete sequence Length = 136535 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 613 ggatccaatattacaggatctccat 637 |||||||| |||||||||||||||| Sbjct: 133270 ggatccaaaattacaggatctccat 133294
>gb|AY432028.1| Aedes aegypti ASAP ID: 34461 unknown mRNA sequence Length = 365 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 204 gagtaaatacaggtccctccttttc 228 |||||||||| |||||||||||||| Sbjct: 167 gagtaaatacgggtccctccttttc 143
>gb|AC158463.7| Mus musculus chromosome 19, clone RP23-71D10, complete sequence Length = 190195 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 349 atgaagagagaaagagaagca 369 ||||||||||||||||||||| Sbjct: 3486 atgaagagagaaagagaagca 3466
>gb|AC156576.3| Mus musculus BAC clone RP23-7C22 from chromosome 13, complete sequence Length = 205345 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 397 aaacatgcaggtgaactcaac 417 ||||||||||||||||||||| Sbjct: 205157 aaacatgcaggtgaactcaac 205177
>gb|AC160465.3| Mus musculus chromosome 8, clone RP23-267N9, complete sequence Length = 224985 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 613 ggatccaatattacaggatctccat 637 |||||||| |||||||||||||||| Sbjct: 210564 ggatccaaaattacaggatctccat 210540
>gb|AC101735.8| Mus musculus chromosome 19, clone RP23-426K3, complete sequence Length = 197927 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 349 atgaagagagaaagagaagca 369 ||||||||||||||||||||| Sbjct: 104254 atgaagagagaaagagaagca 104234
>emb|CR854914.10| Zebrafish DNA sequence from clone DKEY-256M11 in linkage group 5, complete sequence Length = 103750 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 395 gaaaacatgcaggtgaactca 415 ||||||||||||||||||||| Sbjct: 85088 gaaaacatgcaggtgaactca 85108
>gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete genome Length = 6260361 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 347 acatgaagagagaaagagaag 367 ||||||||||||||||||||| Sbjct: 2498006 acatgaagagagaaagagaag 2498026
>gb|AC096554.1| Homo sapiens BAC clone RP11-76I14 from 2, complete sequence Length = 144683 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 10 aagtggtacacatagaccatg 30 ||||||||||||||||||||| Sbjct: 90852 aagtggtacacatagaccatg 90872
>emb|BX927123.8| Zebrafish DNA sequence from clone CH211-278N15 in linkage group 20, complete sequence Length = 121145 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 345 aaacatgaagagagaaagaga 365 ||||||||||||||||||||| Sbjct: 30107 aaacatgaagagagaaagaga 30087
>gb|AC155292.2| Mus musculus BAC clone RP24-440O21 from chromosome 13, complete sequence Length = 184951 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 397 aaacatgcaggtgaactcaac 417 ||||||||||||||||||||| Sbjct: 42466 aaacatgcaggtgaactcaac 42486
>gb|AC120404.25| Mus musculus chromosome 6, clone RP24-405O23, complete sequence Length = 202146 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 93 aaagagaagatgtggctatg 112 |||||||||||||||||||| Sbjct: 25783 aaagagaagatgtggctatg 25802
>ref|NM_001003154.1| Canis familiaris triadin (TRDN), mRNA Length = 3649 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 422 agagctggaggtgagggact 441 |||||||||||||||||||| Sbjct: 2525 agagctggaggtgagggact 2544
>gb|AC161215.6| Mus musculus chromosome 7, clone RP24-185E6, complete sequence Length = 165330 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 614 gatccaatattacaggatctccat 637 ||||||| |||||||||||||||| Sbjct: 12820 gatccaaaattacaggatctccat 12797
>gb|AC162897.4| Mus musculus chromosome 7, clone RP23-371C4, complete sequence Length = 187677 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 614 gatccaatattacaggatctccat 637 ||||||| |||||||||||||||| Sbjct: 53599 gatccaaaattacaggatctccat 53576
>gb|AC164972.2| Mus musculus BAC clone RP23-143M15 from chromosome 9, complete sequence Length = 237322 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 346 aacatgaagagagaaagagaagca 369 ||||||||||||| |||||||||| Sbjct: 58206 aacatgaagagaggaagagaagca 58229
>gb|AC122488.3| Mus musculus BAC clone RP24-383B2 from chromosome 17, complete sequence Length = 206003 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 614 gatccaatattacaggatctccat 637 ||||||| |||||||||||||||| Sbjct: 7294 gatccaaaattacaggatctccat 7317
>gb|AC122404.4| Mus musculus BAC clone RP24-116G1 from chromosome 8, complete sequence Length = 188197 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 352 aagagagaaagagaagcagt 371 |||||||||||||||||||| Sbjct: 5983 aagagagaaagagaagcagt 6002
>gb|AC165343.3| Mus musculus BAC clone RP23-476C24 from chromosome 17, complete sequence Length = 190724 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 614 gatccaatattacaggatctccat 637 ||||||| |||||||||||||||| Sbjct: 103542 gatccaaaattacaggatctccat 103565
>emb|AL592158.14| Human DNA sequence from clone XXyac-38GF2 on chromosome 6, complete sequence Length = 38304 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 352 aagagagaaagagaagcagtcgag 375 |||||||||||||||| ||||||| Sbjct: 10484 aagagagaaagagaaggagtcgag 10461
>emb|AL592157.4| Human DNA sequence from clone RP11-392M9 on chromosome X Contains part of the DIAPH2 gene for diaphanous (Drosophila, homolog) 2 and a NADH dehydrogenase pseudogene, complete sequence Length = 86487 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 352 aagagagaaagagaagcagt 371 |||||||||||||||||||| Sbjct: 17556 aagagagaaagagaagcagt 17575
>emb|AL035588.21|HS696P19 Human DNA sequence from clone RP4-696P19 on chromosome 6p12.3-21.2 Contains the 3' end of the TFEB gene for transcription factor EB (TCFEB), a nucleophosmin (nucleolar phosphoprotein B23, numatrin) (NPM1) pseudogene, the MDFI gene for MyoD family inhibitor, the 5' end of a novel gene and two CpG islands, complete sequence Length = 110665 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 351 gaagagagaaagagaagcag 370 |||||||||||||||||||| Sbjct: 30592 gaagagagaaagagaagcag 30611
>emb|AL669839.13| Mouse DNA sequence from clone RP23-171P1 on chromosome 11 Contains part of the Slit 3 gene for slit homolog 3 (Drosophila), complete sequence Length = 169097 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 346 aacatgaagagagaaagaga 365 |||||||||||||||||||| Sbjct: 154453 aacatgaagagagaaagaga 154472
>gb|AC131888.1| Homo sapiens chromosome 16 clone RP11-626G3, complete sequence Length = 162957 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 56 gggagaagcacaggtgggtg 75 |||||||||||||||||||| Sbjct: 77464 gggagaagcacaggtgggtg 77483
>gb|AC092995.7| Homo sapiens 3 BAC RP11-692L6 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 115749 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 352 aagagagaaagagaagcagt 371 |||||||||||||||||||| Sbjct: 20735 aagagagaaagagaagcagt 20754
>gb|AC108099.2| Homo sapiens chromosome 5 clone RP11-112L7, complete sequence Length = 172945 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 352 aagagagaaagagaagcagt 371 |||||||||||||||||||| Sbjct: 106706 aagagagaaagagaagcagt 106687
>gb|AC092506.3| Homo sapiens chromosome 1 clone RP11-364B6, complete sequence Length = 198279 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 390 tgttggaaaacatgcaggtg 409 |||||||||||||||||||| Sbjct: 161444 tgttggaaaacatgcaggtg 161463
>gb|AF130351.2|AF130351 Homo sapiens chromosome 21 clone PAC 190N10 map 21q11.2, complete sequence Length = 102043 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 349 atgaagagagaaagagaagc 368 |||||||||||||||||||| Sbjct: 69864 atgaagagagaaagagaagc 69883
>emb|CR352834.1| Gallus gallus finished cDNA, clone ChEST119c6 Length = 1837 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 572 acatcccaaactctgcttca 591 |||||||||||||||||||| Sbjct: 1008 acatcccaaactctgcttca 989
>gb|AC083815.17|AC083815 Mus musculus 11 BAC RP23-270L8 (Roswell Park Cancer Institute Mouse BAC Library) complete sequence Length = 173810 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 275 ttacatttaacttttccttt 294 |||||||||||||||||||| Sbjct: 167387 ttacatttaacttttccttt 167368
>emb|AL928798.20| Mouse DNA sequence from clone RP23-7A19 on chromosome 2, complete sequence Length = 192734 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 267 tcagcatgttacatttaact 286 |||||||||||||||||||| Sbjct: 158865 tcagcatgttacatttaact 158846
>gb|AC004695.1|AC004695 Homo sapiens BAC clone CTA-317H1 from 3p13-3p14.2, complete sequence Length = 149572 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 23 agaccatgtcattcatacatgcat 46 ||||| |||||||||||||||||| Sbjct: 88111 agaccttgtcattcatacatgcat 88134
>emb|AL163207.2|HS21C007 Homo sapiens chromosome 21 segment HS21C007 Length = 340000 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 349 atgaagagagaaagagaagc 368 |||||||||||||||||||| Sbjct: 34998 atgaagagagaaagagaagc 35017
>gb|AF165917.1|AF165917 Canis familiaris triadin isoform 3 mRNA, complete cds Length = 3649 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 422 agagctggaggtgagggact 441 |||||||||||||||||||| Sbjct: 2525 agagctggaggtgagggact 2544
>gb|AC174597.2| Mus musculus BAC clone RP24-418F6 from chromosome 6, complete sequence Length = 188358 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 93 aaagagaagatgtggctatg 112 |||||||||||||||||||| Sbjct: 121385 aaagagaagatgtggctatg 121404
>gb|AC101752.14| Mus musculus chromosome 1, clone RP24-344C18, complete sequence Length = 164759 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 402 tgcaggtgaactcaacaagt 421 |||||||||||||||||||| Sbjct: 39878 tgcaggtgaactcaacaagt 39859
>gb|AC161463.3| Gallus gallus BAC clone CH261-127J9 from chromosome ul, complete sequence Length = 213261 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 572 acatcccaaactctgcttca 591 |||||||||||||||||||| Sbjct: 13449 acatcccaaactctgcttca 13468
>emb|AL824706.8| Mouse DNA sequence from clone RP23-218A4 on chromosome 4, complete sequence Length = 207687 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 280 tttaacttttcctttccatc 299 |||||||||||||||||||| Sbjct: 59066 tttaacttttcctttccatc 59047
>emb|CT025567.10| Mouse DNA sequence from clone RP23-302A9 on chromosome 9, complete sequence Length = 238033 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 346 aacatgaagagagaaagagaagca 369 ||||||||||||| |||||||||| Sbjct: 171663 aacatgaagagaggaagagaagca 171686
>emb|AL929013.9| Zebrafish DNA sequence from clone DKEY-77O15, complete sequence Length = 184257 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 275 ttacatttaacttttccttt 294 |||||||||||||||||||| Sbjct: 4957 ttacatttaacttttccttt 4976
>emb|AL645815.1| Human DNA sequence from clone RP13-209P2 on chromosome Xq21.31-22.1, complete sequence Length = 18295 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 352 aagagagaaagagaagcagt 371 |||||||||||||||||||| Sbjct: 2640 aagagagaaagagaagcagt 2621
>emb|AL078473.2|HS2A11 Homo sapiens chromosome 21 Cosmid LLNCO21A112, complete sequence Length = 46007 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 349 atgaagagagaaagagaagc 368 |||||||||||||||||||| Sbjct: 13344 atgaagagagaaagagaagc 13363
>emb|AL590992.12| Mouse DNA sequence from clone RP23-212C14 on chromosome 11, complete sequence Length = 118444 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 614 gatccaatattacaggatctccat 637 ||||||| |||||||||||||||| Sbjct: 50349 gatccaaaattacaggatctccat 50326 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,131,909 Number of Sequences: 3902068 Number of extensions: 6131909 Number of successful extensions: 140942 Number of sequences better than 10.0: 64 Number of HSP's better than 10.0 without gapping: 64 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 140626 Number of HSP's gapped (non-prelim): 315 length of query: 657 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 634 effective length of database: 17,143,297,704 effective search space: 10868850744336 effective search space used: 10868850744336 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)