ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags10g06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_476029.1| Oryza sativa (japonica cultivar-group), predic... 307 3e-80
2dbj|AK068013.1| Oryza sativa (japonica cultivar-group) cDNA clon... 307 3e-80
3dbj|AK058332.1| Oryza sativa (japonica cultivar-group) cDNA clon... 307 3e-80
4gb|AY104877.1| Zea mays PCO129004 mRNA sequence 182 1e-42
5gb|DQ196183.1|DQ196183S1 Triticum monococcum cultivar DV92 putat... 100 1e-17
6gb|AC136217.4| Oryza sativa (japonica cultivar-group) chromosome... 96 2e-16
7dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 96 2e-16
8gb|AE017308.1| Mycoplasma mobile 163K complete genome 42 2.4
9gb|AC146277.2| Pan troglodytes BAC clone CH251-17J20 from X, com... 42 2.4
10gb|AC146276.2| Pan troglodytes BAC clone CH251-149B14 from X, co... 42 2.4
11gb|AC144386.2| Pan troglodytes BAC clone CH251-313C12 from X, co... 42 2.4
12emb|Z70689.2|HSU19D8 Human DNA sequence from clone LL0XNC01-19D8... 42 2.4
13emb|AL590069.5| Human DNA sequence from clone RP11-353J17 on chr... 42 2.4
14gb|AY103409.1| Pyrus communis S-RNase (S) gene, Sl allele, exons... 42 2.4
15dbj|AB236425.1| Pyrus communis Sl-RNase gene for Sl-RNase, compl... 42 2.4
16gb|AC132217.15| Homo sapiens chromosome 11, clone RP11-889I17, c... 42 2.4
17gb|AC151524.2| Medicago truncatula chromosome 7 BAC clone mth2-6... 40 9.3
18gb|AC154426.2| Mus musculus BAC clone RP24-199A21 from chromosom... 40 9.3
19gb|AY619685.1| Uncultured gamma proteobacterium eBACHOT4E07 clon... 40 9.3
20ref|XR_002961.1| PREDICTED: Mus musculus similar to ribosomal pr... 40 9.3
21gb|AC137994.19| Medicago truncatula clone mth2-23f15, complete s... 40 9.3
22gb|AC148238.4| Medicago truncatula clone mth2-4a11, complete seq... 40 9.3
23emb|AL121931.10|HS1131C10 Human DNA sequence from clone RP5-1131... 40 9.3
24gb|AC013587.10| Homo sapiens chromosome 18, clone RP11-7L24, com... 40 9.3
25gb|AC084701.5| Homo sapiens chromosome 18, clone RP11-1005F9, co... 40 9.3
26gb|AC063927.15| Homo sapiens 3 BAC RP11-52L11 (Roswell Park Canc... 40 9.3
27gb|AC112650.2| Homo sapiens 3 BAC RP11-3J16 (Roswell Park Cancer... 40 9.3
28gb|AC096769.3| Homo sapiens BAC clone RP11-734O19 from 4, comple... 40 9.3
29gb|AC079856.7| Homo sapiens BAC clone RP11-521B4 from 4, complet... 40 9.3
30gb|AC128031.4| Rattus norvegicus BAC CH230-418E23 (Children's H... 40 9.3
31gb|AC013660.9| Homo sapiens, clone RP11-20A14, complete sequence 40 9.3
32emb|CR392361.2| Zebrafish DNA sequence from clone DKEY-73H23 in ... 40 9.3
33gb|AE016826.1| Buchnera aphidicola str. Bp (Baizongia pistaciae)... 40 9.3
34gb|AC163699.4| Gallus gallus BAC clone CH261-138A17 from chromos... 40 9.3
35gb|AC048347.27| Homo sapiens 12 BAC RP11-367G12 (Roswell Park Ca... 40 9.3
36gb|AC164654.3| Gallus gallus BAC clone CH261-5H7 from chromosome... 40 9.3
37dbj|BA000003.2| Buchnera aphidicola str. APS (Acyrthosiphon pisu... 40 9.3
38gb|CP000029.1| Staphylococcus epidermidis RP62A, complete genome 40 9.3
39gb|AC154333.2| Mus musculus BAC clone RP24-496M21 from 14, compl... 40 9.3
40emb|CR936503.1| Lactobacillus sakei strain 23K complete genome 40 9.3
41gb|CP000020.1| Vibrio fischeri ES114 chromosome I, complete sequ... 40 9.3
42emb|BX005134.5| Zebrafish DNA sequence from clone CH211-162G1 in... 40 9.3
43gb|AE015929.1| Staphylococcus epidermidis ATCC 12228, complete g... 40 9.3
44emb|CT573047.6| Mouse DNA sequence from clone RP23-73L5 on chrom... 40 9.3
45emb|AL626772.10| Mouse DNA sequence from clone RP23-90D4 on chro... 40 9.3
46emb|AL672096.4| Mouse DNA sequence from clone RP23-293N20 on chr... 40 9.3 
>ref|XM_476029.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 921

 Score =  307 bits (155), Expect = 3e-80
 Identities = 287/331 (86%)
 Strand = Plus / Minus

                                                                       
Query: 351 aactctcgtccatgggatcatttccaccatctttcttggtctttgaatcattgcctccat 410
           ||||||| ||||||||||||||||||||  || ||| || || |||||| ||| ||||| 
Sbjct: 919 aactctcatccatgggatcatttccaccgcctctctgggactctgaatccttgtctccag 860

                                                                       
Query: 411 ctgtacaagcgtttgccacagagtcttccaatgcctccaggaacgaagcaactgtgaatt 470
           ||    |||| |||||||| |||||||| |  ||||||||||||||||| ||||||||||
Sbjct: 859 ctcctgaagcttttgccacggagtcttcaagagcctccaggaacgaagctactgtgaatt 800

                                                                       
Query: 471 tatatttactagggtccactccaaattgagcaagatctatttggccagtctgcagcacat 530
           |||||||||||||||| ||||||||||| || ||||||||||| |||||| |||||||||
Sbjct: 799 tatatttactagggtcaactccaaattgtgctagatctatttgcccagtccgcagcacat 740

                                                                       
Query: 531 gagtaaaagcatccagttgctgtcgcaaaggaggactttgcagcagctcaagaatatcac 590
           | ||||| || || | |||||| |||||||||||||||||||  || |||||||||||||
Sbjct: 739 gggtaaacgcttctacttgctgccgcaaaggaggactttgcaatagttcaagaatatcac 680

                                                                       
Query: 591 cagcagtccaagaaccctccggaagatgtgatgccaactgttcaatgggcaaagtttcaa 650
           |||||||||| |  ||||| ||||||| |||||||||||||||||||||||||||||| |
Sbjct: 679 cagcagtccatgggccctctggaagatatgatgccaactgttcaatgggcaaagtttcca 620

                                          
Query: 651 ttagtggcaatatcaaatcaggcttcaagat 681
           | ||||| || | ||||||||||||||||||
Sbjct: 619 tgagtggtaacaccaaatcaggcttcaagat 589
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>dbj|AK068013.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013129L24, full
            insert sequence
          Length = 1356

 Score =  307 bits (155), Expect = 3e-80
 Identities = 287/331 (86%)
 Strand = Plus / Minus

                                                                        
Query: 351  aactctcgtccatgggatcatttccaccatctttcttggtctttgaatcattgcctccat 410
            ||||||| ||||||||||||||||||||  || ||| || || |||||| ||| ||||| 
Sbjct: 1037 aactctcatccatgggatcatttccaccgcctctctgggactctgaatccttgtctccag 978

                                                                        
Query: 411  ctgtacaagcgtttgccacagagtcttccaatgcctccaggaacgaagcaactgtgaatt 470
            ||    |||| |||||||| |||||||| |  ||||||||||||||||| ||||||||||
Sbjct: 977  ctcctgaagcttttgccacggagtcttcaagagcctccaggaacgaagctactgtgaatt 918

                                                                        
Query: 471  tatatttactagggtccactccaaattgagcaagatctatttggccagtctgcagcacat 530
            |||||||||||||||| ||||||||||| || ||||||||||| |||||| |||||||||
Sbjct: 917  tatatttactagggtcaactccaaattgtgctagatctatttgcccagtccgcagcacat 858

                                                                        
Query: 531  gagtaaaagcatccagttgctgtcgcaaaggaggactttgcagcagctcaagaatatcac 590
            | ||||| || || | |||||| |||||||||||||||||||  || |||||||||||||
Sbjct: 857  gggtaaacgcttctacttgctgccgcaaaggaggactttgcaatagttcaagaatatcac 798

                                                                        
Query: 591  cagcagtccaagaaccctccggaagatgtgatgccaactgttcaatgggcaaagtttcaa 650
            |||||||||| |  ||||| ||||||| |||||||||||||||||||||||||||||| |
Sbjct: 797  cagcagtccatgggccctctggaagatatgatgccaactgttcaatgggcaaagtttcca 738

                                           
Query: 651  ttagtggcaatatcaaatcaggcttcaagat 681
            | ||||| || | ||||||||||||||||||
Sbjct: 737  tgagtggtaacaccaaatcaggcttcaagat 707
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>dbj|AK058332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-014-C10, full
            insert sequence
          Length = 1701

 Score =  307 bits (155), Expect = 3e-80
 Identities = 287/331 (86%)
 Strand = Plus / Minus

                                                                        
Query: 351  aactctcgtccatgggatcatttccaccatctttcttggtctttgaatcattgcctccat 410
            ||||||| ||||||||||||||||||||  || ||| || || |||||| ||| ||||| 
Sbjct: 1056 aactctcatccatgggatcatttccaccgcctctctgggactctgaatccttgtctccag 997

                                                                        
Query: 411  ctgtacaagcgtttgccacagagtcttccaatgcctccaggaacgaagcaactgtgaatt 470
            ||    |||| |||||||| |||||||| |  ||||||||||||||||| ||||||||||
Sbjct: 996  ctcctgaagcttttgccacggagtcttcaagagcctccaggaacgaagctactgtgaatt 937

                                                                        
Query: 471  tatatttactagggtccactccaaattgagcaagatctatttggccagtctgcagcacat 530
            |||||||||||||||| ||||||||||| || ||||||||||| |||||| |||||||||
Sbjct: 936  tatatttactagggtcaactccaaattgtgctagatctatttgcccagtccgcagcacat 877

                                                                        
Query: 531  gagtaaaagcatccagttgctgtcgcaaaggaggactttgcagcagctcaagaatatcac 590
            | ||||| || || | |||||| |||||||||||||||||||  || |||||||||||||
Sbjct: 876  gggtaaacgcttctacttgctgccgcaaaggaggactttgcaatagttcaagaatatcac 817

                                                                        
Query: 591  cagcagtccaagaaccctccggaagatgtgatgccaactgttcaatgggcaaagtttcaa 650
            |||||||||| |  ||||| ||||||| |||||||||||||||||||||||||||||| |
Sbjct: 816  cagcagtccatgggccctctggaagatatgatgccaactgttcaatgggcaaagtttcca 757

                                           
Query: 651  ttagtggcaatatcaaatcaggcttcaagat 681
            | ||||| || | ||||||||||||||||||
Sbjct: 756  tgagtggtaacaccaaatcaggcttcaagat 726
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>gb|AY104877.1| Zea mays PCO129004 mRNA sequence
          Length = 1659

 Score =  182 bits (92), Expect = 1e-42
 Identities = 214/254 (84%), Gaps = 3/254 (1%)
 Strand = Plus / Minus

                                                                        
Query: 431  gagtcttccaatgcctccaggaacgaagcaactgtgaatttatatttactagggtccact 490
            ||||||||||||||||||||||||||  | || ||||| ||||||||   |||||| |||
Sbjct: 1088 gagtcttccaatgcctccaggaacgacaccaccgtgaacttatatttgtcagggtcaact 1029

                                                                        
Query: 491  ccaaattgagcaagatctatttggccagtctgcagcacatgagtaaaagcatccagttgc 550
            |||||||||||||||||||| || |||||| |||| || || || || ||||| | ||| 
Sbjct: 1028 ccaaattgagcaagatctatctgcccagtccgcagaacgtgggtgaatgcatctaattgt 969

                                                                        
Query: 551  tgtcgcaaaggaggactttgcagcagctcaagaatatcaccagcagtccaaga---accc 607
            || ||||||||||||||||| || |||||||  |||||||||| | |||| ||   ||||
Sbjct: 968  tggcgcaaaggaggactttggagaagctcaacgatatcaccaggactccatgagccaccc 909

                                                                        
Query: 608  tccggaagatgtgatgccaactgttcaatgggcaaagtttcaattagtggcaatatcaaa 667
            |||||||||||||||||||| ||||||||||||||    ||||||| |||||| | || |
Sbjct: 908  tccggaagatgtgatgccaattgttcaatgggcaagtcctcaattaatggcaagaccaga 849

                          
Query: 668  tcaggcttcaagat 681
            ||||||||||||||
Sbjct: 848  tcaggcttcaagat 835



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                          
Query: 348  atcaactctcgtccatgggatcatttccac 377
            |||||||||||||||||| |||||||||||
Sbjct: 1174 atcaactctcgtccatggcatcatttccac 1145
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>gb|DQ196183.1|DQ196183S1 Triticum monococcum cultivar DV92 putative adhesion regulating
           protein gene, partial cds
          Length = 1348

 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 62/66 (93%)
 Strand = Plus / Plus

                                                                       
Query: 616 atgtgatgccaactgttcaatgggcaaagtttcaattagtggcaatatcaaatcaggctt 675
           |||||||||||||||| |||||||||||||||||||||| ||||||||||| ||||| ||
Sbjct: 1   atgtgatgccaactgtccaatgggcaaagtttcaattaggggcaatatcaattcaggttt 60

                 
Query: 676 caagat 681
           ||||||
Sbjct: 61  caagat 66
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>gb|AC136217.4| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0030I14, complete sequence
          Length = 159035

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 69/76 (90%)
 Strand = Plus / Plus

                                                                         
Query: 606   cctccggaagatgtgatgccaactgttcaatgggcaaagtttcaattagtggcaatatca 665
             |||| ||||||| |||||||||||||||||||||||||||||| || ||||| || | ||
Sbjct: 47087 cctctggaagatatgatgccaactgttcaatgggcaaagtttccatgagtggtaacacca 47146

                             
Query: 666   aatcaggcttcaagat 681
             ||||||||||||||||
Sbjct: 47147 aatcaggcttcaagat 47162



 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 103/123 (83%)
 Strand = Plus / Plus

                                                                         
Query: 351   aactctcgtccatgggatcatttccaccatctttcttggtctttgaatcattgcctccat 410
             ||||||| ||||||||||||||||||||  || ||| || || |||||| ||| ||||| 
Sbjct: 46248 aactctcatccatgggatcatttccaccgcctctctgggactctgaatccttgtctccag 46307

                                                                         
Query: 411   ctgtacaagcgtttgccacagagtcttccaatgcctccaggaacgaagcaactgtgaatt 470
             ||    |||| |||||||| |||||||| |  ||||||||||||||||| ||||||||||
Sbjct: 46308 ctcctgaagcttttgccacggagtcttcaagagcctccaggaacgaagctactgtgaatt 46367

                
Query: 471   tat 473
             |||
Sbjct: 46368 tat 46370



 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 50/54 (92%)
 Strand = Plus / Plus

                                                                   
Query: 547   ttgctgtcgcaaaggaggactttgcagcagctcaagaatatcaccagcagtcca 600
             |||||| |||||||||||||||||||  || |||||||||||||||||||||||
Sbjct: 46947 ttgctgccgcaaaggaggactttgcaatagttcaagaatatcaccagcagtcca 47000



 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 50/55 (90%)
 Strand = Plus / Plus

                                                                    
Query: 474   atttactagggtccactccaaattgagcaagatctatttggccagtctgcagcac 528
             ||||||||||||| ||||||||||| || ||||||||||| |||||| |||||||
Sbjct: 46782 atttactagggtcaactccaaattgtgctagatctatttgcccagtccgcagcac 46836
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 69/76 (90%)
 Strand = Plus / Plus

                                                                            
Query: 606      cctccggaagatgtgatgccaactgttcaatgggcaaagtttcaattagtggcaatatca 665
                |||| ||||||| |||||||||||||||||||||||||||||| || ||||| || | ||
Sbjct: 29399062 cctctggaagatatgatgccaactgttcaatgggcaaagtttccatgagtggtaacacca 29399121

                                
Query: 666      aatcaggcttcaagat 681
                ||||||||||||||||
Sbjct: 29399122 aatcaggcttcaagat 29399137



 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 103/123 (83%)
 Strand = Plus / Plus

                                                                            
Query: 351      aactctcgtccatgggatcatttccaccatctttcttggtctttgaatcattgcctccat 410
                ||||||| ||||||||||||||||||||  || ||| || || |||||| ||| ||||| 
Sbjct: 29398223 aactctcatccatgggatcatttccaccgcctctctgggactctgaatccttgtctccag 29398282

                                                                            
Query: 411      ctgtacaagcgtttgccacagagtcttccaatgcctccaggaacgaagcaactgtgaatt 470
                ||    |||| |||||||| |||||||| |  ||||||||||||||||| ||||||||||
Sbjct: 29398283 ctcctgaagcttttgccacggagtcttcaagagcctccaggaacgaagctactgtgaatt 29398342

                   
Query: 471      tat 473
                |||
Sbjct: 29398343 tat 29398345



 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 50/54 (92%)
 Strand = Plus / Plus

                                                                      
Query: 547      ttgctgtcgcaaaggaggactttgcagcagctcaagaatatcaccagcagtcca 600
                |||||| |||||||||||||||||||  || |||||||||||||||||||||||
Sbjct: 29398922 ttgctgccgcaaaggaggactttgcaatagttcaagaatatcaccagcagtcca 29398975



 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 50/55 (90%)
 Strand = Plus / Plus

                                                                       
Query: 474      atttactagggtccactccaaattgagcaagatctatttggccagtctgcagcac 528
                ||||||||||||| ||||||||||| || ||||||||||| |||||| |||||||
Sbjct: 29398757 atttactagggtcaactccaaattgtgctagatctatttgcccagtccgcagcac 29398811
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>gb|AE017308.1| Mycoplasma mobile 163K complete genome
          Length = 777079

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 267    gatttaaaaattgatactttc 287
              |||||||||||||||||||||
Sbjct: 257324 gatttaaaaattgatactttc 257304
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>gb|AC146277.2| Pan troglodytes BAC clone CH251-17J20 from X, complete sequence
          Length = 160219

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 489   ctccaaattgagcaagatctatttg 513
             |||||||||||| ||||||||||||
Sbjct: 90684 ctccaaattgagaaagatctatttg 90660
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>gb|AC146276.2| Pan troglodytes BAC clone CH251-149B14 from X, complete sequence
          Length = 180335

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 489    ctccaaattgagcaagatctatttg 513
              |||||||||||| ||||||||||||
Sbjct: 107458 ctccaaattgagaaagatctatttg 107482
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>gb|AC144386.2| Pan troglodytes BAC clone CH251-313C12 from X, complete sequence
          Length = 202661

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 489    ctccaaattgagcaagatctatttg 513
              |||||||||||| ||||||||||||
Sbjct: 202213 ctccaaattgagaaagatctatttg 202237
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>emb|Z70689.2|HSU19D8 Human DNA sequence from clone LL0XNC01-19D8 on chromosome X Contains
            the 5' end of the NXF2 gene for nuclear RNA export factor
            2, complete sequence
          Length = 33884

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 489  ctccaaattgagcaagatctatttg 513
            |||||||||||| ||||||||||||
Sbjct: 6043 ctccaaattgagaaagatctatttg 6067
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>emb|AL590069.5| Human DNA sequence from clone RP11-353J17 on chromosome X, complete
              sequence
          Length = 158828

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 489    ctccaaattgagcaagatctatttg 513
              |||||||||||| ||||||||||||
Sbjct: 129102 ctccaaattgagaaagatctatttg 129126
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>gb|AY103409.1| Pyrus communis S-RNase (S) gene, Sl allele, exons 1 and 2 and
           partial cds
          Length = 1751

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 73  tttgaaaatatatccatgtca 93
           |||||||||||||||||||||
Sbjct: 813 tttgaaaatatatccatgtca 833
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>dbj|AB236425.1| Pyrus communis Sl-RNase gene for Sl-RNase, complete cds
          Length = 2072

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 73  tttgaaaatatatccatgtca 93
           |||||||||||||||||||||
Sbjct: 968 tttgaaaatatatccatgtca 988
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>gb|AC132217.15| Homo sapiens chromosome 11, clone RP11-889I17, complete sequence
          Length = 170027

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 389    gtctttgaatcattgcctcca 409
              |||||||||||||||||||||
Sbjct: 145902 gtctttgaatcattgcctcca 145922
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>gb|AC151524.2| Medicago truncatula chromosome 7 BAC clone mth2-67a20, complete
             sequence
          Length = 99692

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 381   ctttcttggtctttgaatca 400
             ||||||||||||||||||||
Sbjct: 11168 ctttcttggtctttgaatca 11149
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>gb|AC154426.2| Mus musculus BAC clone RP24-199A21 from chromosome 14, complete
             sequence
          Length = 210568

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 456   aagcaactgtgaatttatatttac 479
             ||||| ||||||||||||||||||
Sbjct: 43710 aagcagctgtgaatttatatttac 43733
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>gb|AY619685.1| Uncultured gamma proteobacterium eBACHOT4E07 clone eBACHOT4E07,
             complete sequence
          Length = 71264

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 263   atcagatttaaaaattgata 282
             ||||||||||||||||||||
Sbjct: 26752 atcagatttaaaaattgata 26733
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>ref|XR_002961.1| PREDICTED: Mus musculus similar to ribosomal protein L6
           (LOC382872), mRNA
          Length = 1041

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 513 ggccagtctgcagcacatga 532
           ||||||||||||||||||||
Sbjct: 880 ggccagtctgcagcacatga 861
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>gb|AC137994.19| Medicago truncatula clone mth2-23f15, complete sequence
          Length = 131563

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 381   ctttcttggtctttgaatca 400
             ||||||||||||||||||||
Sbjct: 21740 ctttcttggtctttgaatca 21759
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>gb|AC148238.4| Medicago truncatula clone mth2-4a11, complete sequence
          Length = 98424

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 655   tggcaatatcaaatcaggcttcaa 678
             ||||||||||| ||||||||||||
Sbjct: 70431 tggcaatatcagatcaggcttcaa 70408
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>emb|AL121931.10|HS1131C10 Human DNA sequence from clone RP5-1131C10 on chromosome 6q12-13,
             complete sequence
          Length = 133751

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 502   aagatctatttggccagtct 521
             ||||||||||||||||||||
Sbjct: 30073 aagatctatttggccagtct 30092
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>gb|AC013587.10| Homo sapiens chromosome 18, clone RP11-7L24, complete sequence
          Length = 128755

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 460   aactgtgaatttatatttac 479
             ||||||||||||||||||||
Sbjct: 80129 aactgtgaatttatatttac 80148
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>gb|AC084701.5| Homo sapiens chromosome 18, clone RP11-1005F9, complete sequence
          Length = 140712

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 263   atcagatttaaaaattgatacttt 286
             |||| |||||||||||||||||||
Sbjct: 80824 atcaaatttaaaaattgatacttt 80801
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>gb|AC063927.15| Homo sapiens 3 BAC RP11-52L11 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 129769

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 15    agacagagcatatgtattca 34
             ||||||||||||||||||||
Sbjct: 23341 agacagagcatatgtattca 23322
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>gb|AC112650.2| Homo sapiens 3 BAC RP11-3J16 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 108449

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 15    agacagagcatatgtattca 34
             ||||||||||||||||||||
Sbjct: 85111 agacagagcatatgtattca 85130
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>gb|AC096769.3| Homo sapiens BAC clone RP11-734O19 from 4, complete sequence
          Length = 70806

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 455   gaagcaactgtgaatttatattta 478
             ||||||||||||| ||||||||||
Sbjct: 59733 gaagcaactgtgattttatattta 59710
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>gb|AC079856.7| Homo sapiens BAC clone RP11-521B4 from 4, complete sequence
          Length = 155340

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 179   actgaaagcatctaaaattcacag 202
             |||||||||||||||||| |||||
Sbjct: 22234 actgaaagcatctaaaatacacag 22257
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>gb|AC128031.4| Rattus norvegicus  BAC CH230-418E23 (Children's Hospital Oakland
             Research Institute Rat (BN/SsNHsd/MCW) BAC library)
             complete sequence
          Length = 176784

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 58    aacctcagaagcatttttgaaaat 81
             |||||| |||||||||||||||||
Sbjct: 25643 aacctctgaagcatttttgaaaat 25620
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>gb|AC013660.9| Homo sapiens, clone RP11-20A14, complete sequence
          Length = 164324

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 263   atcagatttaaaaattgatacttt 286
             |||| |||||||||||||||||||
Sbjct: 14547 atcaaatttaaaaattgatacttt 14570
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>emb|CR392361.2| Zebrafish DNA sequence from clone DKEY-73H23 in linkage group 9,
             complete sequence
          Length = 163815

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 51    cagctagaacctcagaagca 70
             ||||||||||||||||||||
Sbjct: 49077 cagctagaacctcagaagca 49096
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>gb|AE016826.1| Buchnera aphidicola str. Bp (Baizongia pistaciae), complete genome
          Length = 615980

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 267    gatttaaaaattgatacttt 286
              ||||||||||||||||||||
Sbjct: 182362 gatttaaaaattgatacttt 182381
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>gb|AC163699.4| Gallus gallus BAC clone CH261-138A17 from chromosome unknown, complete
             sequence
          Length = 240555

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 527   acatgagtaaaagcatccag 546
             ||||||||||||||||||||
Sbjct: 39281 acatgagtaaaagcatccag 39300
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>gb|AC048347.27| Homo sapiens 12 BAC RP11-367G12 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 54478

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 70    atttttgaaaatatatccatgtca 93
             ||||||||||||||||| ||||||
Sbjct: 27208 atttttgaaaatatatcaatgtca 27185
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>gb|AC164654.3| Gallus gallus BAC clone CH261-5H7 from chromosome unknown, complete
              sequence
          Length = 250515

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 527    acatgagtaaaagcatccag 546
              ||||||||||||||||||||
Sbjct: 214119 acatgagtaaaagcatccag 214138
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>dbj|BA000003.2| Buchnera aphidicola str. APS (Acyrthosiphon pisum) genomic DNA, complete
              sequence
          Length = 640681

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 267    gatttaaaaattgatacttt 286
              ||||||||||||||||||||
Sbjct: 185198 gatttaaaaattgatacttt 185217
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>gb|CP000029.1| Staphylococcus epidermidis RP62A, complete genome
          Length = 2616530

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 266     agatttaaaaattgatactt 285
               ||||||||||||||||||||
Sbjct: 1762509 agatttaaaaattgatactt 1762490
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>gb|AC154333.2| Mus musculus BAC clone RP24-496M21 from 14, complete sequence
          Length = 163565

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 513   ggccagtctgcagcacatga 532
             ||||||||||||||||||||
Sbjct: 28650 ggccagtctgcagcacatga 28669
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>emb|CR936503.1| Lactobacillus sakei strain 23K complete genome
          Length = 1884661

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 612     gaagatgtgatgccaactgttcaa 635
               ||||||||||||||||||| ||||
Sbjct: 1354877 gaagatgtgatgccaactggtcaa 1354854
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>gb|CP000020.1| Vibrio fischeri ES114 chromosome I, complete sequence
          Length = 2906179

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 265    cagatttaaaaattgatactttcc 288
              |||| |||||||||||||||||||
Sbjct: 839472 cagacttaaaaattgatactttcc 839495
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>emb|BX005134.5| Zebrafish DNA sequence from clone CH211-162G1 in linkage group 12,
              complete sequence
          Length = 132434

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 51     cagctagaacctcagaagca 70
              ||||||||||||||||||||
Sbjct: 118449 cagctagaacctcagaagca 118430
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>gb|AE015929.1| Staphylococcus epidermidis ATCC 12228, complete genome
          Length = 2499279

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 266     agatttaaaaattgatactt 285
               ||||||||||||||||||||
Sbjct: 1767484 agatttaaaaattgatactt 1767465
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>emb|CT573047.6| Mouse DNA sequence from clone RP23-73L5 on chromosome 14, complete
              sequence
          Length = 211944

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 513    ggccagtctgcagcacatga 532
              ||||||||||||||||||||
Sbjct: 101508 ggccagtctgcagcacatga 101489
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>emb|AL626772.10| Mouse DNA sequence from clone RP23-90D4 on chromosome 4, complete
             sequence
          Length = 230614

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 559   aggaggactttgcagcagct 578
             ||||||||||||||||||||
Sbjct: 62842 aggaggactttgcagcagct 62861
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>emb|AL672096.4| Mouse DNA sequence from clone RP23-293N20 on chromosome X, complete
             sequence
          Length = 179420

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 261   ccatcagatttaaaaattgatact 284
             |||||||||||||||||| |||||
Sbjct: 98285 ccatcagatttaaaaatttatact 98262


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,546,191
Number of Sequences: 3902068
Number of extensions: 6546191
Number of successful extensions: 126768
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 126444
Number of HSP's gapped (non-prelim): 317
length of query: 681
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 658
effective length of database: 17,143,297,704
effective search space: 11280289889232
effective search space used: 11280289889232
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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