| Clone Name | rbags10g03 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC117264.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1005_D04, complete sequence Length = 168424 Score = 109 bits (55), Expect = 2e-21 Identities = 85/95 (89%) Strand = Plus / Plus Query: 12 agtggaacacctttcttggacatcaccagagttgtacccggctgagttcccgaggggatc 71 ||||| |||||||||||||||||||| | ||||| || ||||| || || ||||||||| Sbjct: 157621 agtgggacacctttcttggacatcactaacgttgtgcctggctgggtaccggaggggatc 157680 Query: 72 ttcaggtcaaccaccccatcaacagtgggaacctt 106 ||||||||||||| ||||||||||||||||||||| Sbjct: 157681 ttcaggtcaaccatcccatcaacagtgggaacctt 157715 Score = 109 bits (55), Expect = 2e-21 Identities = 85/95 (89%) Strand = Plus / Plus Query: 12 agtggaacacctttcttggacatcaccagagttgtacccggctgagttcccgaggggatc 71 ||||| |||||||||||||||||||| | ||||| || ||||| || || ||||||||| Sbjct: 148733 agtgggacacctttcttggacatcactaacgttgtgcctggctgggtaccggaggggatc 148792 Query: 72 ttcaggtcaaccaccccatcaacagtgggaacctt 106 ||||||||||||| ||||||||||||||||||||| Sbjct: 148793 ttcaggtcaaccatcccatcaacagtgggaacctt 148827 Score = 109 bits (55), Expect = 2e-21 Identities = 85/95 (89%) Strand = Plus / Plus Query: 12 agtggaacacctttcttggacatcaccagagttgtacccggctgagttcccgaggggatc 71 ||||| |||||||||||||||||||| | ||||| || ||||| || || ||||||||| Sbjct: 139896 agtgggacacctttcttggacatcactaacgttgtgcctggctgggtaccggaggggatc 139955 Query: 72 ttcaggtcaaccaccccatcaacagtgggaacctt 106 ||||||||||||| ||||||||||||||||||||| Sbjct: 139956 ttcaggtcaaccatcccatcaacagtgggaacctt 139990
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 109 bits (55), Expect = 2e-21 Identities = 85/95 (89%) Strand = Plus / Plus Query: 12 agtggaacacctttcttggacatcaccagagttgtacccggctgagttcccgaggggatc 71 ||||| |||||||||||||||||||| | ||||| || ||||| || || ||||||||| Sbjct: 15502600 agtgggacacctttcttggacatcactaacgttgtgcctggctgggtaccggaggggatc 15502659 Query: 72 ttcaggtcaaccaccccatcaacagtgggaacctt 106 ||||||||||||| ||||||||||||||||||||| Sbjct: 15502660 ttcaggtcaaccatcccatcaacagtgggaacctt 15502694 Score = 109 bits (55), Expect = 2e-21 Identities = 85/95 (89%) Strand = Plus / Plus Query: 12 agtggaacacctttcttggacatcaccagagttgtacccggctgagttcccgaggggatc 71 ||||| |||||||||||||||||||| | ||||| || ||||| || || ||||||||| Sbjct: 15493712 agtgggacacctttcttggacatcactaacgttgtgcctggctgggtaccggaggggatc 15493771 Query: 72 ttcaggtcaaccaccccatcaacagtgggaacctt 106 ||||||||||||| ||||||||||||||||||||| Sbjct: 15493772 ttcaggtcaaccatcccatcaacagtgggaacctt 15493806 Score = 109 bits (55), Expect = 2e-21 Identities = 85/95 (89%) Strand = Plus / Plus Query: 12 agtggaacacctttcttggacatcaccagagttgtacccggctgagttcccgaggggatc 71 ||||| |||||||||||||||||||| | ||||| || ||||| || || ||||||||| Sbjct: 15484875 agtgggacacctttcttggacatcactaacgttgtgcctggctgggtaccggaggggatc 15484934 Query: 72 ttcaggtcaaccaccccatcaacagtgggaacctt 106 ||||||||||||| ||||||||||||||||||||| Sbjct: 15484935 ttcaggtcaaccatcccatcaacagtgggaacctt 15484969
>dbj|AK101370.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033035M17, full insert sequence Length = 2127 Score = 109 bits (55), Expect = 2e-21 Identities = 85/95 (89%) Strand = Plus / Minus Query: 12 agtggaacacctttcttggacatcaccagagttgtacccggctgagttcccgaggggatc 71 ||||| |||||||||||||||||||| | ||||| || ||||| || || ||||||||| Sbjct: 1527 agtgggacacctttcttggacatcactaacgttgtgcctggctgggtaccggaggggatc 1468 Query: 72 ttcaggtcaaccaccccatcaacagtgggaacctt 106 ||||||||||||| ||||||||||||||||||||| Sbjct: 1467 ttcaggtcaaccatcccatcaacagtgggaacctt 1433
>gb|AC144739.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0049D13, complete sequence Length = 136942 Score = 109 bits (55), Expect = 2e-21 Identities = 85/95 (89%) Strand = Plus / Plus Query: 12 agtggaacacctttcttggacatcaccagagttgtacccggctgagttcccgaggggatc 71 ||||| |||||||||||||||||||| | ||||| || ||||| || || ||||||||| Sbjct: 27106 agtgggacacctttcttggacatcactaacgttgtgcctggctgggtaccggaggggatc 27165 Query: 72 ttcaggtcaaccaccccatcaacagtgggaacctt 106 ||||||||||||| ||||||||||||||||||||| Sbjct: 27166 ttcaggtcaaccatcccatcaacagtgggaacctt 27200 Score = 109 bits (55), Expect = 2e-21 Identities = 85/95 (89%) Strand = Plus / Plus Query: 12 agtggaacacctttcttggacatcaccagagttgtacccggctgagttcccgaggggatc 71 ||||| |||||||||||||||||||| | ||||| || ||||| || || ||||||||| Sbjct: 18218 agtgggacacctttcttggacatcactaacgttgtgcctggctgggtaccggaggggatc 18277 Query: 72 ttcaggtcaaccaccccatcaacagtgggaacctt 106 ||||||||||||| ||||||||||||||||||||| Sbjct: 18278 ttcaggtcaaccatcccatcaacagtgggaacctt 18312 Score = 109 bits (55), Expect = 2e-21 Identities = 85/95 (89%) Strand = Plus / Plus Query: 12 agtggaacacctttcttggacatcaccagagttgtacccggctgagttcccgaggggatc 71 ||||| |||||||||||||||||||| | ||||| || ||||| || || ||||||||| Sbjct: 9381 agtgggacacctttcttggacatcactaacgttgtgcctggctgggtaccggaggggatc 9440 Query: 72 ttcaggtcaaccaccccatcaacagtgggaacctt 106 ||||||||||||| ||||||||||||||||||||| Sbjct: 9441 ttcaggtcaaccatcccatcaacagtgggaacctt 9475
>dbj|AB055405.1| Oryza sativa mRNA for DNAJ homologue, complete cds Length = 1987 Score = 105 bits (53), Expect = 3e-20 Identities = 80/89 (89%) Strand = Plus / Minus Query: 18 acacctttcttggacatcaccagagttgtacccggctgagttcccgaggggatcttcagg 77 |||||||||||||||||||| | ||||| || ||||| || || ||||||||||||||| Sbjct: 1371 acacctttcttggacatcactaacgttgtgcctggctgggtaccggaggggatcttcagg 1312 Query: 78 tcaaccaccccatcaacagtgggaacctt 106 ||||||| ||||||||||||||||||||| Sbjct: 1311 tcaaccatcccatcaacagtgggaacctt 1283
>gb|AY109723.1| Zea mays CL825_1 mRNA sequence Length = 3035 Score = 87.7 bits (44), Expect = 6e-15 Identities = 80/92 (86%) Strand = Plus / Minus Query: 9 agaagtggaacacctttcttggacatcaccagagttgtacccggctgagttcccgagggg 68 ||||| || ||||||||||||||||||||||||||||| || |||||||| || ||||| Sbjct: 2494 agaagcgggacacctttcttggacatcaccagagttgtgcctggctgagtccctgagggt 2435 Query: 69 atcttcaggtcaaccaccccatcaacagtggg 100 ||||| ||||||||| || ||||||||||| Sbjct: 2434 atcttaaggtcaaccgttccgtcaacagtggg 2403
>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence Length = 3806533 Score = 38.2 bits (19), Expect = 4.9 Identities = 22/23 (95%) Strand = Plus / Minus Query: 74 caggtcaaccaccccatcaacag 96 ||||||||||||| ||||||||| Sbjct: 2300266 caggtcaaccaccacatcaacag 2300244
>emb|AL138702.8| Human DNA sequence from clone RP11-407E23 on chromosome 13, complete sequence Length = 191567 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 84 accccatcaacagtgggaa 102 ||||||||||||||||||| Sbjct: 60239 accccatcaacagtgggaa 60257
>emb|AL121913.4|HSJ1059L7 Human DNA sequence from clone RP5-1059L7 on chromosome 20q13.2-13.33 Contains the 5' end of the TMEPAI gene for transmembrane prostate androgen induced mRNA, ESTs, STSs, GSSs and two CpG islands, complete sequence Length = 150224 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 72 ttcaggtcaaccaccccat 90 ||||||||||||||||||| Sbjct: 30554 ttcaggtcaaccaccccat 30536
>gb|AF305426.1|AF305426 Homo sapiens solid tumor-associated 1 protein (STAG1/PMEPA1) gene, complete cds Length = 61505 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 72 ttcaggtcaaccaccccat 90 ||||||||||||||||||| Sbjct: 22251 ttcaggtcaaccaccccat 22269
>dbj|AB097116.1| Brassica rapa SRK-60, SLG-60 genes for S receptor kinase, S-locus glycoprotein, partial cds Length = 86379 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 8 aagaagtggaacacctttc 26 ||||||||||||||||||| Sbjct: 43332 aagaagtggaacacctttc 43350 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 712,566 Number of Sequences: 3902068 Number of extensions: 712566 Number of successful extensions: 45707 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 11 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 45669 Number of HSP's gapped (non-prelim): 38 length of query: 109 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 88 effective length of database: 17,151,101,840 effective search space: 1509296961920 effective search space used: 1509296961920 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)