ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags10g03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC117264.2| Oryza sativa (japonica cultivar-group) chromosome... 109 2e-21
2dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 109 2e-21
3dbj|AK101370.1| Oryza sativa (japonica cultivar-group) cDNA clon... 109 2e-21
4gb|AC144739.3| Oryza sativa (japonica cultivar-group) chromosome... 109 2e-21
5dbj|AB055405.1| Oryza sativa mRNA for DNAJ homologue, complete cds 105 3e-20
6gb|AY109723.1| Zea mays CL825_1 mRNA sequence 88 6e-15
7gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete ... 38 4.9
8emb|AL138702.8| Human DNA sequence from clone RP11-407E23 on chr... 38 4.9
9emb|AL121913.4|HSJ1059L7 Human DNA sequence from clone RP5-1059L... 38 4.9
10gb|AF305426.1|AF305426 Homo sapiens solid tumor-associated 1 pro... 38 4.9
11dbj|AB097116.1| Brassica rapa SRK-60, SLG-60 genes for S recepto... 38 4.9

>gb|AC117264.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1005_D04,
              complete sequence
          Length = 168424

 Score =  109 bits (55), Expect = 2e-21
 Identities = 85/95 (89%)
 Strand = Plus / Plus

                                                                          
Query: 12     agtggaacacctttcttggacatcaccagagttgtacccggctgagttcccgaggggatc 71
              ||||| |||||||||||||||||||| |  ||||| || ||||| || || |||||||||
Sbjct: 157621 agtgggacacctttcttggacatcactaacgttgtgcctggctgggtaccggaggggatc 157680

                                                 
Query: 72     ttcaggtcaaccaccccatcaacagtgggaacctt 106
              ||||||||||||| |||||||||||||||||||||
Sbjct: 157681 ttcaggtcaaccatcccatcaacagtgggaacctt 157715



 Score =  109 bits (55), Expect = 2e-21
 Identities = 85/95 (89%)
 Strand = Plus / Plus

                                                                          
Query: 12     agtggaacacctttcttggacatcaccagagttgtacccggctgagttcccgaggggatc 71
              ||||| |||||||||||||||||||| |  ||||| || ||||| || || |||||||||
Sbjct: 148733 agtgggacacctttcttggacatcactaacgttgtgcctggctgggtaccggaggggatc 148792

                                                 
Query: 72     ttcaggtcaaccaccccatcaacagtgggaacctt 106
              ||||||||||||| |||||||||||||||||||||
Sbjct: 148793 ttcaggtcaaccatcccatcaacagtgggaacctt 148827



 Score =  109 bits (55), Expect = 2e-21
 Identities = 85/95 (89%)
 Strand = Plus / Plus

                                                                          
Query: 12     agtggaacacctttcttggacatcaccagagttgtacccggctgagttcccgaggggatc 71
              ||||| |||||||||||||||||||| |  ||||| || ||||| || || |||||||||
Sbjct: 139896 agtgggacacctttcttggacatcactaacgttgtgcctggctgggtaccggaggggatc 139955

                                                 
Query: 72     ttcaggtcaaccaccccatcaacagtgggaacctt 106
              ||||||||||||| |||||||||||||||||||||
Sbjct: 139956 ttcaggtcaaccatcccatcaacagtgggaacctt 139990



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  109 bits (55), Expect = 2e-21
 Identities = 85/95 (89%)
 Strand = Plus / Plus

                                                                            
Query: 12       agtggaacacctttcttggacatcaccagagttgtacccggctgagttcccgaggggatc 71
                ||||| |||||||||||||||||||| |  ||||| || ||||| || || |||||||||
Sbjct: 15502600 agtgggacacctttcttggacatcactaacgttgtgcctggctgggtaccggaggggatc 15502659

                                                   
Query: 72       ttcaggtcaaccaccccatcaacagtgggaacctt 106
                ||||||||||||| |||||||||||||||||||||
Sbjct: 15502660 ttcaggtcaaccatcccatcaacagtgggaacctt 15502694



 Score =  109 bits (55), Expect = 2e-21
 Identities = 85/95 (89%)
 Strand = Plus / Plus

                                                                            
Query: 12       agtggaacacctttcttggacatcaccagagttgtacccggctgagttcccgaggggatc 71
                ||||| |||||||||||||||||||| |  ||||| || ||||| || || |||||||||
Sbjct: 15493712 agtgggacacctttcttggacatcactaacgttgtgcctggctgggtaccggaggggatc 15493771

                                                   
Query: 72       ttcaggtcaaccaccccatcaacagtgggaacctt 106
                ||||||||||||| |||||||||||||||||||||
Sbjct: 15493772 ttcaggtcaaccatcccatcaacagtgggaacctt 15493806



 Score =  109 bits (55), Expect = 2e-21
 Identities = 85/95 (89%)
 Strand = Plus / Plus

                                                                            
Query: 12       agtggaacacctttcttggacatcaccagagttgtacccggctgagttcccgaggggatc 71
                ||||| |||||||||||||||||||| |  ||||| || ||||| || || |||||||||
Sbjct: 15484875 agtgggacacctttcttggacatcactaacgttgtgcctggctgggtaccggaggggatc 15484934

                                                   
Query: 72       ttcaggtcaaccaccccatcaacagtgggaacctt 106
                ||||||||||||| |||||||||||||||||||||
Sbjct: 15484935 ttcaggtcaaccatcccatcaacagtgggaacctt 15484969



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>dbj|AK101370.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033035M17, full
            insert sequence
          Length = 2127

 Score =  109 bits (55), Expect = 2e-21
 Identities = 85/95 (89%)
 Strand = Plus / Minus

                                                                        
Query: 12   agtggaacacctttcttggacatcaccagagttgtacccggctgagttcccgaggggatc 71
            ||||| |||||||||||||||||||| |  ||||| || ||||| || || |||||||||
Sbjct: 1527 agtgggacacctttcttggacatcactaacgttgtgcctggctgggtaccggaggggatc 1468

                                               
Query: 72   ttcaggtcaaccaccccatcaacagtgggaacctt 106
            ||||||||||||| |||||||||||||||||||||
Sbjct: 1467 ttcaggtcaaccatcccatcaacagtgggaacctt 1433



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>gb|AC144739.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0049D13, complete sequence
          Length = 136942

 Score =  109 bits (55), Expect = 2e-21
 Identities = 85/95 (89%)
 Strand = Plus / Plus

                                                                         
Query: 12    agtggaacacctttcttggacatcaccagagttgtacccggctgagttcccgaggggatc 71
             ||||| |||||||||||||||||||| |  ||||| || ||||| || || |||||||||
Sbjct: 27106 agtgggacacctttcttggacatcactaacgttgtgcctggctgggtaccggaggggatc 27165

                                                
Query: 72    ttcaggtcaaccaccccatcaacagtgggaacctt 106
             ||||||||||||| |||||||||||||||||||||
Sbjct: 27166 ttcaggtcaaccatcccatcaacagtgggaacctt 27200



 Score =  109 bits (55), Expect = 2e-21
 Identities = 85/95 (89%)
 Strand = Plus / Plus

                                                                         
Query: 12    agtggaacacctttcttggacatcaccagagttgtacccggctgagttcccgaggggatc 71
             ||||| |||||||||||||||||||| |  ||||| || ||||| || || |||||||||
Sbjct: 18218 agtgggacacctttcttggacatcactaacgttgtgcctggctgggtaccggaggggatc 18277

                                                
Query: 72    ttcaggtcaaccaccccatcaacagtgggaacctt 106
             ||||||||||||| |||||||||||||||||||||
Sbjct: 18278 ttcaggtcaaccatcccatcaacagtgggaacctt 18312



 Score =  109 bits (55), Expect = 2e-21
 Identities = 85/95 (89%)
 Strand = Plus / Plus

                                                                        
Query: 12   agtggaacacctttcttggacatcaccagagttgtacccggctgagttcccgaggggatc 71
            ||||| |||||||||||||||||||| |  ||||| || ||||| || || |||||||||
Sbjct: 9381 agtgggacacctttcttggacatcactaacgttgtgcctggctgggtaccggaggggatc 9440

                                               
Query: 72   ttcaggtcaaccaccccatcaacagtgggaacctt 106
            ||||||||||||| |||||||||||||||||||||
Sbjct: 9441 ttcaggtcaaccatcccatcaacagtgggaacctt 9475



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>dbj|AB055405.1| Oryza sativa mRNA for DNAJ homologue, complete cds
          Length = 1987

 Score =  105 bits (53), Expect = 3e-20
 Identities = 80/89 (89%)
 Strand = Plus / Minus

                                                                        
Query: 18   acacctttcttggacatcaccagagttgtacccggctgagttcccgaggggatcttcagg 77
            |||||||||||||||||||| |  ||||| || ||||| || || |||||||||||||||
Sbjct: 1371 acacctttcttggacatcactaacgttgtgcctggctgggtaccggaggggatcttcagg 1312

                                         
Query: 78   tcaaccaccccatcaacagtgggaacctt 106
            ||||||| |||||||||||||||||||||
Sbjct: 1311 tcaaccatcccatcaacagtgggaacctt 1283



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>gb|AY109723.1| Zea mays CL825_1 mRNA sequence
          Length = 3035

 Score = 87.7 bits (44), Expect = 6e-15
 Identities = 80/92 (86%)
 Strand = Plus / Minus

                                                                        
Query: 9    agaagtggaacacctttcttggacatcaccagagttgtacccggctgagttcccgagggg 68
            ||||| || ||||||||||||||||||||||||||||| || |||||||| || ||||| 
Sbjct: 2494 agaagcgggacacctttcttggacatcaccagagttgtgcctggctgagtccctgagggt 2435

                                            
Query: 69   atcttcaggtcaaccaccccatcaacagtggg 100
            ||||| |||||||||   || |||||||||||
Sbjct: 2434 atcttaaggtcaaccgttccgtcaacagtggg 2403



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>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence
          Length = 3806533

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                      
Query: 74      caggtcaaccaccccatcaacag 96
               ||||||||||||| |||||||||
Sbjct: 2300266 caggtcaaccaccacatcaacag 2300244



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>emb|AL138702.8| Human DNA sequence from clone RP11-407E23 on chromosome 13, complete
             sequence
          Length = 191567

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 84    accccatcaacagtgggaa 102
             |||||||||||||||||||
Sbjct: 60239 accccatcaacagtgggaa 60257



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>emb|AL121913.4|HSJ1059L7 Human DNA sequence from clone RP5-1059L7 on chromosome 20q13.2-13.33
             Contains the 5' end of the TMEPAI gene for transmembrane
             prostate androgen induced mRNA, ESTs, STSs, GSSs and two
             CpG islands, complete sequence
          Length = 150224

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 72    ttcaggtcaaccaccccat 90
             |||||||||||||||||||
Sbjct: 30554 ttcaggtcaaccaccccat 30536



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>gb|AF305426.1|AF305426 Homo sapiens solid tumor-associated 1 protein (STAG1/PMEPA1) gene,
             complete cds
          Length = 61505

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 72    ttcaggtcaaccaccccat 90
             |||||||||||||||||||
Sbjct: 22251 ttcaggtcaaccaccccat 22269



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>dbj|AB097116.1| Brassica rapa SRK-60, SLG-60 genes for S receptor kinase, S-locus
             glycoprotein, partial cds
          Length = 86379

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 8     aagaagtggaacacctttc 26
             |||||||||||||||||||
Sbjct: 43332 aagaagtggaacacctttc 43350


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 712,566
Number of Sequences: 3902068
Number of extensions: 712566
Number of successful extensions: 45707
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 45669
Number of HSP's gapped (non-prelim): 38
length of query: 109
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 88
effective length of database: 17,151,101,840
effective search space: 1509296961920
effective search space used: 1509296961920
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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