ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags10g02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|NM_197133.1| Oryza sativa (japonica cultivar-group) putative... 103 6e-19
2gb|AC023240.9| Oryza sativa chromosome 10 BAC OSJNBa0051D19 geno... 103 6e-19
3dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 103 6e-19
4gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 103 6e-19
5ref|XM_535982.2| PREDICTED: Canis familiaris cardiac titin (TTN)... 42 1.9
6gb|AF508982.1| Homo sapiens Na+/Ca2+ exchanger isoform 3 (SLC8A3... 42 1.9
7emb|CR956416.5| Pig DNA sequence from clone PigI-464E6 on chromo... 42 1.9
8gb|AC148981.7| Mus musculus BAC clone RP23-201L15 from chromosom... 42 1.9
9gb|AC150843.16| Medicago truncatula clone mth2-103p8, complete s... 42 1.9
10emb|BX324156.6| Zebrafish DNA sequence from clone CH211-215C3 in... 42 1.9
11emb|AL135747.4|CNS01DVE Human chromosome 14 DNA sequence BAC R-1... 42 1.9
12emb|AL160191.3|CNS01RGT Human chromosome 14 DNA sequence BAC R-4... 42 1.9
13gb|AC171274.2| Gallus gallus BAC clone CH261-121C13 from chromos... 42 1.9
14emb|AL928888.5| Mouse DNA sequence from clone RP23-390M20 on chr... 42 1.9
15gb|AC164523.4| Mus musculus chromosome 5, clone RP24-245O20, com... 40 7.4
16gb|AC146257.3| Pan troglodytes BAC clone CH251-113A6 from Y, com... 40 7.4
17emb|AL732423.12| Human DNA sequence from clone RP11-345L8 on chr... 40 7.4
18gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome 40 7.4
19gb|AC008810.8| Homo sapiens chromosome 5 clone CTD-2096I23, comp... 40 7.4
20dbj|BS000583.2| Pan troglodytes chromosome Y clone:PTB-614F22, c... 40 7.4
21dbj|BS000591.1| Pan troglodytes chromosome Y clone:PTB-113D22, c... 40 7.4
22gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence 40 7.4
23gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 40 7.4
24gb|AC007303.7|AC007303 Drosophila melanogaster, chromosome 2R, r... 40 7.4
25gb|AC007085.7|AC007085 Drosophila melanogaster, chromosome 2R, r... 40 7.4
26gb|CP000009.1| Gluconobacter oxydans 621H, complete genome 40 7.4
27gb|AE003836.4| Drosophila melanogaster chromosome 2R, section 14... 40 7.4
28gb|AC171010.3| Gallus gallus BAC clone CH261-161I5 from chromoso... 40 7.4

>ref|NM_197133.1| Oryza sativa (japonica cultivar-group) putative chloroplast inner
            envelope protein (OSJNBa0051D19.7), mRNA
          Length = 2967

 Score =  103 bits (52), Expect = 6e-19
 Identities = 137/166 (82%)
 Strand = Plus / Minus

                                                                        
Query: 366  gccttctcggcgctgatgtcgagtaaatactgcaacctcgacagcttgtcctgcttcgga 425
            ||||||||| |||| ||| | || | |||||||||||| |||||||| ||  ||||||||
Sbjct: 2891 gccttctcgtcgcttatgccaagcagatactgcaaccttgacagcttttcaggcttcgga 2832

                                                                        
Query: 426  atgctcttcatgtacacgcagtacaggtcgtcaagctctcgcggagtgggccatgacaag 485
            |||||||||||||| | || |||||| || || |||||||  |  || |||||||| | |
Sbjct: 2831 atgctcttcatgtaaatgccgtacagatcatccagctctcctgatgtaggccatgatagg 2772

                                                          
Query: 486  ggcttcnaagcaggcaccgccgcgtcacatgcgagcaggtcgntca 531
            |||||| |||||||||| |||||||| ||||| |||| |||| |||
Sbjct: 2771 ggcttcgaagcaggcacagccgcgtcgcatgcaagcaagtcgttca 2726



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>gb|AC023240.9| Oryza sativa chromosome 10 BAC OSJNBa0051D19 genomic sequence, complete
             sequence
          Length = 131984

 Score =  103 bits (52), Expect = 6e-19
 Identities = 137/166 (82%)
 Strand = Plus / Minus

                                                                         
Query: 366   gccttctcggcgctgatgtcgagtaaatactgcaacctcgacagcttgtcctgcttcgga 425
             ||||||||| |||| ||| | || | |||||||||||| |||||||| ||  ||||||||
Sbjct: 58255 gccttctcgtcgcttatgccaagcagatactgcaaccttgacagcttttcaggcttcgga 58196

                                                                         
Query: 426   atgctcttcatgtacacgcagtacaggtcgtcaagctctcgcggagtgggccatgacaag 485
             |||||||||||||| | || |||||| || || |||||||  |  || |||||||| | |
Sbjct: 58195 atgctcttcatgtaaatgccgtacagatcatccagctctcctgatgtaggccatgatagg 58136

                                                           
Query: 486   ggcttcnaagcaggcaccgccgcgtcacatgcgagcaggtcgntca 531
             |||||| |||||||||| |||||||| ||||| |||| |||| |||
Sbjct: 58135 ggcttcgaagcaggcacagccgcgtcgcatgcaagcaagtcgttca 58090



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 52/59 (88%)
 Strand = Plus / Minus

                                                                        
Query: 205   ttggcgccacagcaccgcgtctggcaggagctcgactctgctggctacctaacaaaaaa 263
             ||||||||||||||||  || ||| |||  ||| |||||||||||||||||||||||||
Sbjct: 58410 ttggcgccacagcaccaagtatggtaggtcctcaactctgctggctacctaacaaaaaa 58352



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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score =  103 bits (52), Expect = 6e-19
 Identities = 137/166 (82%)
 Strand = Plus / Plus

                                                                            
Query: 366      gccttctcggcgctgatgtcgagtaaatactgcaacctcgacagcttgtcctgcttcgga 425
                ||||||||| |||| ||| | || | |||||||||||| |||||||| ||  ||||||||
Sbjct: 18154873 gccttctcgtcgcttatgccaagcagatactgcaaccttgacagcttttcaggcttcgga 18154932

                                                                            
Query: 426      atgctcttcatgtacacgcagtacaggtcgtcaagctctcgcggagtgggccatgacaag 485
                |||||||||||||| | || |||||| || || |||||||  |  || |||||||| | |
Sbjct: 18154933 atgctcttcatgtaaatgccgtacagatcatccagctctcctgatgtaggccatgatagg 18154992

                                                              
Query: 486      ggcttcnaagcaggcaccgccgcgtcacatgcgagcaggtcgntca 531
                |||||| |||||||||| |||||||| ||||| |||| |||| |||
Sbjct: 18154993 ggcttcgaagcaggcacagccgcgtcgcatgcaagcaagtcgttca 18155038



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 52/59 (88%)
 Strand = Plus / Plus

                                                                           
Query: 205      ttggcgccacagcaccgcgtctggcaggagctcgactctgctggctacctaacaaaaaa 263
                ||||||||||||||||  || ||| |||  ||| |||||||||||||||||||||||||
Sbjct: 18154718 ttggcgccacagcaccaagtatggtaggtcctcaactctgctggctacctaacaaaaaa 18154776



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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score =  103 bits (52), Expect = 6e-19
 Identities = 137/166 (82%)
 Strand = Plus / Plus

                                                                            
Query: 366      gccttctcggcgctgatgtcgagtaaatactgcaacctcgacagcttgtcctgcttcgga 425
                ||||||||| |||| ||| | || | |||||||||||| |||||||| ||  ||||||||
Sbjct: 18164126 gccttctcgtcgcttatgccaagcagatactgcaaccttgacagcttttcaggcttcgga 18164185

                                                                            
Query: 426      atgctcttcatgtacacgcagtacaggtcgtcaagctctcgcggagtgggccatgacaag 485
                |||||||||||||| | || |||||| || || |||||||  |  || |||||||| | |
Sbjct: 18164186 atgctcttcatgtaaatgccgtacagatcatccagctctcctgatgtaggccatgatagg 18164245

                                                              
Query: 486      ggcttcnaagcaggcaccgccgcgtcacatgcgagcaggtcgntca 531
                |||||| |||||||||| |||||||| ||||| |||| |||| |||
Sbjct: 18164246 ggcttcgaagcaggcacagccgcgtcgcatgcaagcaagtcgttca 18164291



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 52/59 (88%)
 Strand = Plus / Plus

                                                                           
Query: 205      ttggcgccacagcaccgcgtctggcaggagctcgactctgctggctacctaacaaaaaa 263
                ||||||||||||||||  || ||| |||  ||| |||||||||||||||||||||||||
Sbjct: 18163971 ttggcgccacagcaccaagtatggtaggtcctcaactctgctggctacctaacaaaaaa 18164029



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>ref|XM_535982.2| PREDICTED: Canis familiaris cardiac titin (TTN), mRNA
          Length = 36258

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                  
Query: 93    ttgaaagaatgcagcagaaaactgtcaccttgtggtg 129
             |||||| |||| || |||||||||||||||| |||||
Sbjct: 28913 ttgaaacaatggagaagaaaactgtcaccttctggtg 28949



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>gb|AF508982.1| Homo sapiens Na+/Ca2+ exchanger isoform 3 (SLC8A3) gene, promoter region
              and complete cds
          Length = 145118

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 99     gaatgcagcagaaaactgtca 119
              |||||||||||||||||||||
Sbjct: 129073 gaatgcagcagaaaactgtca 129053



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>emb|CR956416.5| Pig DNA sequence from clone PigI-464E6 on chromosome 7, complete
             sequence
          Length = 141597

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 258   aaaaaagtgttctcttcccat 278
             |||||||||||||||||||||
Sbjct: 26869 aaaaaagtgttctcttcccat 26849



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>gb|AC148981.7| Mus musculus BAC clone RP23-201L15 from chromosome 7, complete sequence
          Length = 223522

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 54     aaaagcacagaggagaaacag 74
              |||||||||||||||||||||
Sbjct: 160749 aaaagcacagaggagaaacag 160729



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>gb|AC150843.16| Medicago truncatula clone mth2-103p8, complete sequence
          Length = 125707

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 158   atgtcaggatcatgcaaaaccatgc 182
             ||||||||||||| |||||||||||
Sbjct: 48840 atgtcaggatcattcaaaaccatgc 48816



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>emb|BX324156.6| Zebrafish DNA sequence from clone CH211-215C3 in linkage group 1,
              complete sequence
          Length = 214471

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 94     tgaaagaatgcagcagaaaac 114
              |||||||||||||||||||||
Sbjct: 196841 tgaaagaatgcagcagaaaac 196861



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>emb|AL135747.4|CNS01DVE Human chromosome 14 DNA sequence BAC R-1023I22 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 173275

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 99    gaatgcagcagaaaactgtca 119
             |||||||||||||||||||||
Sbjct: 17529 gaatgcagcagaaaactgtca 17509



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>emb|AL160191.3|CNS01RGT Human chromosome 14 DNA sequence BAC R-486O13 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 206256

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 99     gaatgcagcagaaaactgtca 119
              |||||||||||||||||||||
Sbjct: 203549 gaatgcagcagaaaactgtca 203529



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>gb|AC171274.2| Gallus gallus BAC clone CH261-121C13 from chromosome ul, complete
              sequence
          Length = 218983

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 184    ctagctacaaaacagcagcta 204
              |||||||||||||||||||||
Sbjct: 214858 ctagctacaaaacagcagcta 214878



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>emb|AL928888.5| Mouse DNA sequence from clone RP23-390M20 on chromosome 2, complete
             sequence
          Length = 77974

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 57    agcacagaggagaaacagaaa 77
             |||||||||||||||||||||
Sbjct: 35601 agcacagaggagaaacagaaa 35581



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>gb|AC164523.4| Mus musculus chromosome 5, clone RP24-245O20, complete sequence
          Length = 156556

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 9     tacaaagggaactgcagtgactgc 32
             |||||||||||||| |||||||||
Sbjct: 25786 tacaaagggaactgaagtgactgc 25763



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>gb|AC146257.3| Pan troglodytes BAC clone CH251-113A6 from Y, complete sequence
          Length = 174522

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 58     gcacagaggagaaacagaaa 77
              ||||||||||||||||||||
Sbjct: 100490 gcacagaggagaaacagaaa 100471



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>emb|AL732423.12| Human DNA sequence from clone RP11-345L8 on chromosome X Contains the 3'
              end of the SH3KBP1 gene for SH3-domain kinase binding
              protein 1 (CIN85) and the 5' end of the gene for a novel
              protein similar to mitogen-activated protein kinase kinase
              kinase 5 (MAP3K5), complete sequence
          Length = 173520

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 55     aaagcacagaggagaaacag 74
              ||||||||||||||||||||
Sbjct: 155464 aaagcacagaggagaaacag 155483



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>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 406     acagcttgtcctgcttcgga 425
               ||||||||||||||||||||
Sbjct: 2936270 acagcttgtcctgcttcgga 2936289



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>gb|AC008810.8| Homo sapiens chromosome 5 clone CTD-2096I23, complete sequence
          Length = 157325

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 100   aatgcagcagaaaactgtcacctt 123
             |||||||||||||||| |||||||
Sbjct: 79523 aatgcagcagaaaactatcacctt 79500



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>dbj|BS000583.2| Pan troglodytes chromosome Y clone:PTB-614F22, complete sequence
          Length = 158476

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 58    gcacagaggagaaacagaaa 77
             ||||||||||||||||||||
Sbjct: 45428 gcacagaggagaaacagaaa 45447



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>dbj|BS000591.1| Pan troglodytes chromosome Y clone:PTB-113D22, complete sequence
          Length = 188847

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 58     gcacagaggagaaacagaaa 77
              ||||||||||||||||||||
Sbjct: 143452 gcacagaggagaaacagaaa 143471



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>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 58       gcacagaggagaaacagaaa 77
                ||||||||||||||||||||
Sbjct: 16926578 gcacagaggagaaacagaaa 16926559



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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 406     acagcttgtcctgcttcgga 425
               ||||||||||||||||||||
Sbjct: 3249258 acagcttgtcctgcttcgga 3249239



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>gb|AC007303.7|AC007303 Drosophila melanogaster, chromosome 2R, region 44E-44F, BAC clone
              BACR43I04, complete sequence
          Length = 169509

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 69     aaacagaaacggtttcagta 88
              ||||||||||||||||||||
Sbjct: 138170 aaacagaaacggtttcagta 138151



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>gb|AC007085.7|AC007085 Drosophila melanogaster, chromosome 2R, region 44D2-44E1, BAC clone
              BACR21H10, complete sequence
          Length = 166867

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 69     aaacagaaacggtttcagta 88
              ||||||||||||||||||||
Sbjct: 127030 aaacagaaacggtttcagta 127049



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>gb|CP000009.1| Gluconobacter oxydans 621H, complete genome
          Length = 2702173

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 496    caggcaccgccgcgtcacat 515
              ||||||||||||||||||||
Sbjct: 634311 caggcaccgccgcgtcacat 634292



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>gb|AE003836.4| Drosophila melanogaster chromosome 2R, section 14 of 73 of the complete
              sequence
          Length = 259383

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 69     aaacagaaacggtttcagta 88
              ||||||||||||||||||||
Sbjct: 150288 aaacagaaacggtttcagta 150307



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>gb|AC171010.3| Gallus gallus BAC clone CH261-161I5 from chromosome ul, complete sequence
          Length = 245010

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 58     gcacagaggagaaacagaaa 77
              ||||||||||||||||||||
Sbjct: 235060 gcacagaggagaaacagaaa 235079


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,131,577
Number of Sequences: 3902068
Number of extensions: 5131577
Number of successful extensions: 95914
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 95624
Number of HSP's gapped (non-prelim): 290
length of query: 548
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 525
effective length of database: 17,143,297,704
effective search space: 9000231294600
effective search space used: 9000231294600
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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