| Clone Name | rbags10g02 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_197133.1| Oryza sativa (japonica cultivar-group) putative chloroplast inner envelope protein (OSJNBa0051D19.7), mRNA Length = 2967 Score = 103 bits (52), Expect = 6e-19 Identities = 137/166 (82%) Strand = Plus / Minus Query: 366 gccttctcggcgctgatgtcgagtaaatactgcaacctcgacagcttgtcctgcttcgga 425 ||||||||| |||| ||| | || | |||||||||||| |||||||| || |||||||| Sbjct: 2891 gccttctcgtcgcttatgccaagcagatactgcaaccttgacagcttttcaggcttcgga 2832 Query: 426 atgctcttcatgtacacgcagtacaggtcgtcaagctctcgcggagtgggccatgacaag 485 |||||||||||||| | || |||||| || || ||||||| | || |||||||| | | Sbjct: 2831 atgctcttcatgtaaatgccgtacagatcatccagctctcctgatgtaggccatgatagg 2772 Query: 486 ggcttcnaagcaggcaccgccgcgtcacatgcgagcaggtcgntca 531 |||||| |||||||||| |||||||| ||||| |||| |||| ||| Sbjct: 2771 ggcttcgaagcaggcacagccgcgtcgcatgcaagcaagtcgttca 2726
>gb|AC023240.9| Oryza sativa chromosome 10 BAC OSJNBa0051D19 genomic sequence, complete sequence Length = 131984 Score = 103 bits (52), Expect = 6e-19 Identities = 137/166 (82%) Strand = Plus / Minus Query: 366 gccttctcggcgctgatgtcgagtaaatactgcaacctcgacagcttgtcctgcttcgga 425 ||||||||| |||| ||| | || | |||||||||||| |||||||| || |||||||| Sbjct: 58255 gccttctcgtcgcttatgccaagcagatactgcaaccttgacagcttttcaggcttcgga 58196 Query: 426 atgctcttcatgtacacgcagtacaggtcgtcaagctctcgcggagtgggccatgacaag 485 |||||||||||||| | || |||||| || || ||||||| | || |||||||| | | Sbjct: 58195 atgctcttcatgtaaatgccgtacagatcatccagctctcctgatgtaggccatgatagg 58136 Query: 486 ggcttcnaagcaggcaccgccgcgtcacatgcgagcaggtcgntca 531 |||||| |||||||||| |||||||| ||||| |||| |||| ||| Sbjct: 58135 ggcttcgaagcaggcacagccgcgtcgcatgcaagcaagtcgttca 58090 Score = 61.9 bits (31), Expect = 2e-06 Identities = 52/59 (88%) Strand = Plus / Minus Query: 205 ttggcgccacagcaccgcgtctggcaggagctcgactctgctggctacctaacaaaaaa 263 |||||||||||||||| || ||| ||| ||| ||||||||||||||||||||||||| Sbjct: 58410 ttggcgccacagcaccaagtatggtaggtcctcaactctgctggctacctaacaaaaaa 58352
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 103 bits (52), Expect = 6e-19 Identities = 137/166 (82%) Strand = Plus / Plus Query: 366 gccttctcggcgctgatgtcgagtaaatactgcaacctcgacagcttgtcctgcttcgga 425 ||||||||| |||| ||| | || | |||||||||||| |||||||| || |||||||| Sbjct: 18154873 gccttctcgtcgcttatgccaagcagatactgcaaccttgacagcttttcaggcttcgga 18154932 Query: 426 atgctcttcatgtacacgcagtacaggtcgtcaagctctcgcggagtgggccatgacaag 485 |||||||||||||| | || |||||| || || ||||||| | || |||||||| | | Sbjct: 18154933 atgctcttcatgtaaatgccgtacagatcatccagctctcctgatgtaggccatgatagg 18154992 Query: 486 ggcttcnaagcaggcaccgccgcgtcacatgcgagcaggtcgntca 531 |||||| |||||||||| |||||||| ||||| |||| |||| ||| Sbjct: 18154993 ggcttcgaagcaggcacagccgcgtcgcatgcaagcaagtcgttca 18155038 Score = 61.9 bits (31), Expect = 2e-06 Identities = 52/59 (88%) Strand = Plus / Plus Query: 205 ttggcgccacagcaccgcgtctggcaggagctcgactctgctggctacctaacaaaaaa 263 |||||||||||||||| || ||| ||| ||| ||||||||||||||||||||||||| Sbjct: 18154718 ttggcgccacagcaccaagtatggtaggtcctcaactctgctggctacctaacaaaaaa 18154776
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 103 bits (52), Expect = 6e-19 Identities = 137/166 (82%) Strand = Plus / Plus Query: 366 gccttctcggcgctgatgtcgagtaaatactgcaacctcgacagcttgtcctgcttcgga 425 ||||||||| |||| ||| | || | |||||||||||| |||||||| || |||||||| Sbjct: 18164126 gccttctcgtcgcttatgccaagcagatactgcaaccttgacagcttttcaggcttcgga 18164185 Query: 426 atgctcttcatgtacacgcagtacaggtcgtcaagctctcgcggagtgggccatgacaag 485 |||||||||||||| | || |||||| || || ||||||| | || |||||||| | | Sbjct: 18164186 atgctcttcatgtaaatgccgtacagatcatccagctctcctgatgtaggccatgatagg 18164245 Query: 486 ggcttcnaagcaggcaccgccgcgtcacatgcgagcaggtcgntca 531 |||||| |||||||||| |||||||| ||||| |||| |||| ||| Sbjct: 18164246 ggcttcgaagcaggcacagccgcgtcgcatgcaagcaagtcgttca 18164291 Score = 61.9 bits (31), Expect = 2e-06 Identities = 52/59 (88%) Strand = Plus / Plus Query: 205 ttggcgccacagcaccgcgtctggcaggagctcgactctgctggctacctaacaaaaaa 263 |||||||||||||||| || ||| ||| ||| ||||||||||||||||||||||||| Sbjct: 18163971 ttggcgccacagcaccaagtatggtaggtcctcaactctgctggctacctaacaaaaaa 18164029
>ref|XM_535982.2| PREDICTED: Canis familiaris cardiac titin (TTN), mRNA Length = 36258 Score = 42.1 bits (21), Expect = 1.9 Identities = 33/37 (89%) Strand = Plus / Plus Query: 93 ttgaaagaatgcagcagaaaactgtcaccttgtggtg 129 |||||| |||| || |||||||||||||||| ||||| Sbjct: 28913 ttgaaacaatggagaagaaaactgtcaccttctggtg 28949
>gb|AF508982.1| Homo sapiens Na+/Ca2+ exchanger isoform 3 (SLC8A3) gene, promoter region and complete cds Length = 145118 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 99 gaatgcagcagaaaactgtca 119 ||||||||||||||||||||| Sbjct: 129073 gaatgcagcagaaaactgtca 129053
>emb|CR956416.5| Pig DNA sequence from clone PigI-464E6 on chromosome 7, complete sequence Length = 141597 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 258 aaaaaagtgttctcttcccat 278 ||||||||||||||||||||| Sbjct: 26869 aaaaaagtgttctcttcccat 26849
>gb|AC148981.7| Mus musculus BAC clone RP23-201L15 from chromosome 7, complete sequence Length = 223522 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 54 aaaagcacagaggagaaacag 74 ||||||||||||||||||||| Sbjct: 160749 aaaagcacagaggagaaacag 160729
>gb|AC150843.16| Medicago truncatula clone mth2-103p8, complete sequence Length = 125707 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 158 atgtcaggatcatgcaaaaccatgc 182 ||||||||||||| ||||||||||| Sbjct: 48840 atgtcaggatcattcaaaaccatgc 48816
>emb|BX324156.6| Zebrafish DNA sequence from clone CH211-215C3 in linkage group 1, complete sequence Length = 214471 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 94 tgaaagaatgcagcagaaaac 114 ||||||||||||||||||||| Sbjct: 196841 tgaaagaatgcagcagaaaac 196861
>emb|AL135747.4|CNS01DVE Human chromosome 14 DNA sequence BAC R-1023I22 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 173275 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 99 gaatgcagcagaaaactgtca 119 ||||||||||||||||||||| Sbjct: 17529 gaatgcagcagaaaactgtca 17509
>emb|AL160191.3|CNS01RGT Human chromosome 14 DNA sequence BAC R-486O13 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 206256 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 99 gaatgcagcagaaaactgtca 119 ||||||||||||||||||||| Sbjct: 203549 gaatgcagcagaaaactgtca 203529
>gb|AC171274.2| Gallus gallus BAC clone CH261-121C13 from chromosome ul, complete sequence Length = 218983 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 184 ctagctacaaaacagcagcta 204 ||||||||||||||||||||| Sbjct: 214858 ctagctacaaaacagcagcta 214878
>emb|AL928888.5| Mouse DNA sequence from clone RP23-390M20 on chromosome 2, complete sequence Length = 77974 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 57 agcacagaggagaaacagaaa 77 ||||||||||||||||||||| Sbjct: 35601 agcacagaggagaaacagaaa 35581
>gb|AC164523.4| Mus musculus chromosome 5, clone RP24-245O20, complete sequence Length = 156556 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 9 tacaaagggaactgcagtgactgc 32 |||||||||||||| ||||||||| Sbjct: 25786 tacaaagggaactgaagtgactgc 25763
>gb|AC146257.3| Pan troglodytes BAC clone CH251-113A6 from Y, complete sequence Length = 174522 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 58 gcacagaggagaaacagaaa 77 |||||||||||||||||||| Sbjct: 100490 gcacagaggagaaacagaaa 100471
>emb|AL732423.12| Human DNA sequence from clone RP11-345L8 on chromosome X Contains the 3' end of the SH3KBP1 gene for SH3-domain kinase binding protein 1 (CIN85) and the 5' end of the gene for a novel protein similar to mitogen-activated protein kinase kinase kinase 5 (MAP3K5), complete sequence Length = 173520 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 55 aaagcacagaggagaaacag 74 |||||||||||||||||||| Sbjct: 155464 aaagcacagaggagaaacag 155483
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 406 acagcttgtcctgcttcgga 425 |||||||||||||||||||| Sbjct: 2936270 acagcttgtcctgcttcgga 2936289
>gb|AC008810.8| Homo sapiens chromosome 5 clone CTD-2096I23, complete sequence Length = 157325 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 100 aatgcagcagaaaactgtcacctt 123 |||||||||||||||| ||||||| Sbjct: 79523 aatgcagcagaaaactatcacctt 79500
>dbj|BS000583.2| Pan troglodytes chromosome Y clone:PTB-614F22, complete sequence Length = 158476 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 58 gcacagaggagaaacagaaa 77 |||||||||||||||||||| Sbjct: 45428 gcacagaggagaaacagaaa 45447
>dbj|BS000591.1| Pan troglodytes chromosome Y clone:PTB-113D22, complete sequence Length = 188847 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 58 gcacagaggagaaacagaaa 77 |||||||||||||||||||| Sbjct: 143452 gcacagaggagaaacagaaa 143471
>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence Length = 23952694 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 58 gcacagaggagaaacagaaa 77 |||||||||||||||||||| Sbjct: 16926578 gcacagaggagaaacagaaa 16926559
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 406 acagcttgtcctgcttcgga 425 |||||||||||||||||||| Sbjct: 3249258 acagcttgtcctgcttcgga 3249239
>gb|AC007303.7|AC007303 Drosophila melanogaster, chromosome 2R, region 44E-44F, BAC clone BACR43I04, complete sequence Length = 169509 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 69 aaacagaaacggtttcagta 88 |||||||||||||||||||| Sbjct: 138170 aaacagaaacggtttcagta 138151
>gb|AC007085.7|AC007085 Drosophila melanogaster, chromosome 2R, region 44D2-44E1, BAC clone BACR21H10, complete sequence Length = 166867 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 69 aaacagaaacggtttcagta 88 |||||||||||||||||||| Sbjct: 127030 aaacagaaacggtttcagta 127049
>gb|CP000009.1| Gluconobacter oxydans 621H, complete genome Length = 2702173 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 496 caggcaccgccgcgtcacat 515 |||||||||||||||||||| Sbjct: 634311 caggcaccgccgcgtcacat 634292
>gb|AE003836.4| Drosophila melanogaster chromosome 2R, section 14 of 73 of the complete sequence Length = 259383 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 69 aaacagaaacggtttcagta 88 |||||||||||||||||||| Sbjct: 150288 aaacagaaacggtttcagta 150307
>gb|AC171010.3| Gallus gallus BAC clone CH261-161I5 from chromosome ul, complete sequence Length = 245010 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 58 gcacagaggagaaacagaaa 77 |||||||||||||||||||| Sbjct: 235060 gcacagaggagaaacagaaa 235079 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,131,577 Number of Sequences: 3902068 Number of extensions: 5131577 Number of successful extensions: 95914 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 28 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 95624 Number of HSP's gapped (non-prelim): 290 length of query: 548 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 525 effective length of database: 17,143,297,704 effective search space: 9000231294600 effective search space used: 9000231294600 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)