ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbags10f06 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT009337.1| Triticum aestivum clone wlm4.pk0012.g12:fis, full insert mRNA sequence Length = 1412 Score = 396 bits (200), Expect = e-107 Identities = 289/320 (90%), Gaps = 3/320 (0%) Strand = Plus / Minus Query: 10 agaatgttgggcatatacaaaggtatgaganggatngggatagaacatcatcaaacattc 69 |||||||||| |||||||||| |||||||| |||| || ||||||||||||||| |||| Sbjct: 419 agaatgttggacatatacaaaagtatgagaaggattgg-atagaacatcatcaagcatt- 362 Query: 70 tgaacacccgggaccggtcactaatggtctaaatcctgctcacctcctccagttngaata 129 ||||| | ||||| | | |||||||||||||||||||||||||||||| |||| ||| | Sbjct: 361 -gaacatcagggacagttgactaatggtctaaatcctgctcacctcctcaagttagaaca 303 Query: 130 tgcactganaagatggntnccagaagaataatttcagncctctttgaacagctcacggnc 189 |||||||| ||| ||| | ||||||||||||| |||| ||||||| |||||||||||| | Sbjct: 302 tgcactgacaagctggcttccagaagaataatctcagtcctctttaaacagctcacggcc 243 Query: 190 aattatcattcttctgatctnactagtaccagccccaatctcgaacagttttgcatctct 249 |||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| || Sbjct: 242 aattatcattcttctgatctcactagtacccgccccaatctcgaacagttttgcatccct 183 Query: 250 cagtagacgcccagttgggtactcatttatgtatncattgccaccaagacactggattgc 309 ||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 182 caggagacggccagttgggtactcatttatgtatccattgccaccaagacactggattgc 123 Query: 310 ctcaagtgcaacttgngttg 329 ||||||||||||||| |||| Sbjct: 122 ctcaagtgcaacttgtgttg 103
>gb|BT016848.1| Zea mays clone Contig681 mRNA sequence Length = 855 Score = 218 bits (110), Expect = 9e-54 Identities = 153/169 (90%) Strand = Plus / Plus Query: 161 tttcagncctctttgaacagctcacggncaattatcattcttctgatctnactagtacca 220 |||||| |||||||||| ||||||||| |||||||||||||||| | || |||||||||| Sbjct: 163 tttcagtcctctttgaagagctcacggccaattatcattcttcttacctcactagtacca 222 Query: 221 gccccaatctcgaacagttttgcatctctcagtagacgcccagttgggtactcatttatg 280 || |||||||| |||| ||||||||||||||| ||||| ||||||||||||||||||||| Sbjct: 223 gcaccaatctcaaacaattttgcatctctcaggagacgaccagttgggtactcatttatg 282 Query: 281 tatncattgccaccaagacactggattgcctcaagtgcaacttgngttg 329 || |||| |||||||||||||||||||||| |||||||||||| |||| Sbjct: 283 tacccatttccaccaagacactggattgcctgaagtgcaacttgggttg 331
>gb|AY107381.1| Zea mays PCO061330 mRNA sequence Length = 1531 Score = 210 bits (106), Expect = 2e-51 Identities = 152/169 (89%) Strand = Plus / Minus Query: 161 tttcagncctctttgaacagctcacggncaattatcattcttctgatctnactagtacca 220 |||||| |||||||||| ||||||||| |||||||||||||||| | || ||||||||| Sbjct: 1320 tttcagtcctctttgaagagctcacggccaattatcattcttcttacctcactagtaccg 1261 Query: 221 gccccaatctcgaacagttttgcatctctcagtagacgcccagttgggtactcatttatg 280 || |||||||| |||| ||||||||||||||| ||||| ||||||||||||||||||||| Sbjct: 1260 gcaccaatctcaaacaattttgcatctctcaggagacgaccagttgggtactcatttatg 1201 Query: 281 tatncattgccaccaagacactggattgcctcaagtgcaacttgngttg 329 || |||| |||||||||||||||||||||| |||||||||||| |||| Sbjct: 1200 tacccatttccaccaagacactggattgcctgaagtgcaacttgggttg 1152
>dbj|AK071923.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013072N03, full insert sequence Length = 1663 Score = 188 bits (95), Expect = 8e-45 Identities = 153/174 (87%) Strand = Plus / Minus Query: 156 aataatttcagncctctttgaacagctcacggncaattatcattcttctgatctnactag 215 |||| ||||| |||||||||| ||||| ||| |||||||||||||||| |||| ||||| Sbjct: 1500 aatagtttcactcctctttgaagagctcgcggccaattatcattcttcttatctcactag 1441 Query: 216 taccagccccaatctcgaacagttttgcatctctcagtagacgcccagttgggtactcat 275 |||| || |||||||| |||||||||||||||||||| | || |||||||||||||||| Sbjct: 1440 taccggctccaatctcaaacagttttgcatctctcagcaatcggccagttgggtactcat 1381 Query: 276 ttatgtatncattgccaccaagacactggattgcctcaagtgcaacttgngttg 329 |||||||| | ||||||||||||||||| ||||||| ||||||||| || |||| Sbjct: 1380 ttatgtatccgttgccaccaagacactgtattgcctgaagtgcaacctgggttg 1327
>dbj|AK066314.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013064C04, full insert sequence Length = 1500 Score = 188 bits (95), Expect = 8e-45 Identities = 153/174 (87%) Strand = Plus / Minus Query: 156 aataatttcagncctctttgaacagctcacggncaattatcattcttctgatctnactag 215 |||| ||||| |||||||||| ||||| ||| |||||||||||||||| |||| ||||| Sbjct: 1337 aatagtttcactcctctttgaagagctcgcggccaattatcattcttcttatctcactag 1278 Query: 216 taccagccccaatctcgaacagttttgcatctctcagtagacgcccagttgggtactcat 275 |||| || |||||||| |||||||||||||||||||| | || |||||||||||||||| Sbjct: 1277 taccggctccaatctcaaacagttttgcatctctcagcaatcggccagttgggtactcat 1218 Query: 276 ttatgtatncattgccaccaagacactggattgcctcaagtgcaacttgngttg 329 |||||||| | ||||||||||||||||| ||||||| ||||||||| || |||| Sbjct: 1217 ttatgtatccgttgccaccaagacactgtattgcctgaagtgcaacctgggttg 1164
>ref|XM_475553.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1230 Score = 186 bits (94), Expect = 3e-44 Identities = 144/162 (88%) Strand = Plus / Minus Query: 168 cctctttgaacagctcacggncaattatcattcttctgatctnactagtaccagccccaa 227 |||||||||| ||||| ||| |||||||||||||||| |||| ||||||||| || |||| Sbjct: 1225 cctctttgaagagctcgcggccaattatcattcttcttatctcactagtaccggctccaa 1166 Query: 228 tctcgaacagttttgcatctctcagtagacgcccagttgggtactcatttatgtatncat 287 |||| |||||||||||||||||||| | || |||||||||||||||||||||||| | | Sbjct: 1165 tctcaaacagttttgcatctctcagcaatcggccagttgggtactcatttatgtatccgt 1106 Query: 288 tgccaccaagacactggattgcctcaagtgcaacttgngttg 329 |||||||||||||||| ||||||| ||||||||| || |||| Sbjct: 1105 tgccaccaagacactgtattgcctgaagtgcaacctgggttg 1064
>gb|AC134931.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0079L11, complete sequence Length = 124104 Score = 174 bits (88), Expect = 1e-40 Identities = 138/156 (88%) Strand = Plus / Plus Query: 156 aataatttcagncctctttgaacagctcacggncaattatcattcttctgatctnactag 215 |||| ||||| |||||||||| ||||| ||| |||||||||||||||| |||| ||||| Sbjct: 71475 aatagtttcactcctctttgaagagctcgcggccaattatcattcttcttatctcactag 71534 Query: 216 taccagccccaatctcgaacagttttgcatctctcagtagacgcccagttgggtactcat 275 |||| || |||||||| |||||||||||||||||||| | || |||||||||||||||| Sbjct: 71535 taccggctccaatctcaaacagttttgcatctctcagcaatcggccagttgggtactcat 71594 Query: 276 ttatgtatncattgccaccaagacactggattgcct 311 |||||||| | ||||||||||||||||| ||||||| Sbjct: 71595 ttatgtatccgttgccaccaagacactgtattgcct 71630
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 174 bits (88), Expect = 1e-40 Identities = 138/156 (88%) Strand = Plus / Plus Query: 156 aataatttcagncctctttgaacagctcacggncaattatcattcttctgatctnactag 215 |||| ||||| |||||||||| ||||| ||| |||||||||||||||| |||| ||||| Sbjct: 1409813 aatagtttcactcctctttgaagagctcgcggccaattatcattcttcttatctcactag 1409872 Query: 216 taccagccccaatctcgaacagttttgcatctctcagtagacgcccagttgggtactcat 275 |||| || |||||||| |||||||||||||||||||| | || |||||||||||||||| Sbjct: 1409873 taccggctccaatctcaaacagttttgcatctctcagcaatcggccagttgggtactcat 1409932 Query: 276 ttatgtatncattgccaccaagacactggattgcct 311 |||||||| | ||||||||||||||||| ||||||| Sbjct: 1409933 ttatgtatccgttgccaccaagacactgtattgcct 1409968
>gb|AC129720.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0683F12, complete sequence Length = 144455 Score = 174 bits (88), Expect = 1e-40 Identities = 138/156 (88%) Strand = Plus / Plus Query: 156 aataatttcagncctctttgaacagctcacggncaattatcattcttctgatctnactag 215 |||| ||||| |||||||||| ||||| ||| |||||||||||||||| |||| ||||| Sbjct: 3893 aatagtttcactcctctttgaagagctcgcggccaattatcattcttcttatctcactag 3952 Query: 216 taccagccccaatctcgaacagttttgcatctctcagtagacgcccagttgggtactcat 275 |||| || |||||||| |||||||||||||||||||| | || |||||||||||||||| Sbjct: 3953 taccggctccaatctcaaacagttttgcatctctcagcaatcggccagttgggtactcat 4012 Query: 276 ttatgtatncattgccaccaagacactggattgcct 311 |||||||| | ||||||||||||||||| ||||||| Sbjct: 4013 ttatgtatccgttgccaccaagacactgtattgcct 4048
>gb|BT017728.1| Zea mays clone EL01N0447H09.c mRNA sequence Length = 942 Score = 117 bits (59), Expect = 2e-23 Identities = 142/170 (83%), Gaps = 1/170 (0%) Strand = Plus / Minus Query: 161 tttcagncctctttgaacagctcacggncaattatcattct-tctgatctnactagtacc 219 |||||| ||| |||||| ||||||||| ||||||||||| | | | |||| || | ||| Sbjct: 741 tttcagtcctttttgaagagctcacggccaattatcattgtgtgttatctcgcttggacc 682 Query: 220 agccccaatctcgaacagttttgcatctctcagtagacgcccagttgggtactcatttat 279 |||||||||||| |||| |||||||| | | || ||||| |||| ||||||||||||||| Sbjct: 681 agccccaatctcaaacaattttgcatttttgaggagacgaccagctgggtactcatttat 622 Query: 280 gtatncattgccaccaagacactggattgcctcaagtgcaacttgngttg 329 ||| |||| ||||||||||| ||||| |||| |||||| ||||| |||| Sbjct: 621 gtacccatttccaccaagacagtggatcgcctgaagtgccacttgggttg 572
>emb|AJ278988.1|STU278988 Solanum tuberosum partial mRNA for isovaleryl-CoA dehydrogenase (ivd2 gene) Length = 1415 Score = 71.9 bits (36), Expect = 1e-09 Identities = 119/148 (80%) Strand = Plus / Minus Query: 182 tcacggncaattatcattcttctgatctnactagtaccagccccaatctcgaacagtttt 241 |||||| | ||||||||||||||||||| ||| || || || |||||||| | ||||| Sbjct: 1187 tcacggcctattatcattcttctgatctcacttgtgcctgcaccaatctcatatagtttg 1128 Query: 242 gcatctctcagtagacgcccagttgggtactcatttatgtatncattgccaccaagacac 301 ||||||| || | ||| ||||| ||||||||||| | ||| ||||||| || || ||| Sbjct: 1127 gcatctcggagaaaacgtccagtcgggtactcattcacgtagccattgcctccgaggcac 1068 Query: 302 tggattgcctcaagtgcaacttgngttg 329 || || |||| ||| |||||||| |||| Sbjct: 1067 tgaatagcctgaagagcaacttgggttg 1040
>gb|AC152176.5| Medicago truncatula clone mth2-65c4, complete sequence Length = 161536 Score = 60.0 bits (30), Expect = 5e-06 Identities = 71/85 (83%) Strand = Plus / Plus Query: 189 caattatcattcttctgatctnactagtaccagccccaatctcgaacagttttgcatctc 248 |||| |||||||||||||||| ||| || || ||||| |||||| | ||||| ||||||| Sbjct: 11871 caataatcattcttctgatctcacttgttccggccccgatctcgtagagtttcgcatctc 11930 Query: 249 tcagtagacgcccagttgggtactc 273 | || ||||| || ||||| ||||| Sbjct: 11931 taaggagacgaccggttggatactc 11955
>emb|AJ010946.1|PSA010946 Pisum sativum abp44/ivdh gene for Isovaleryl-CoA dehydrogenase/auxin binding protein Length = 3572 Score = 50.1 bits (25), Expect = 0.005 Identities = 48/56 (85%) Strand = Plus / Minus Query: 194 atcattcttctgatctnactagtaccagccccaatctcgaacagttttgcatctct 249 |||||||||||||||| |||||| || || || |||||| | ||||| |||||||| Sbjct: 3313 atcattcttctgatctcactagttccggctccgatctcgtaaagtttagcatctct 3258
>emb|AJ010945.1|PSA010945 Pisum sativum mRNA for Isovaleryl-CoA dehydrogenase/auxin binding protein (abp44/ivdh gene) Length = 1559 Score = 50.1 bits (25), Expect = 0.005 Identities = 48/56 (85%) Strand = Plus / Minus Query: 194 atcattcttctgatctnactagtaccagccccaatctcgaacagttttgcatctct 249 |||||||||||||||| |||||| || || || |||||| | ||||| |||||||| Sbjct: 1300 atcattcttctgatctcactagttccggctccgatctcgtaaagtttagcatctct 1245
>emb|CR659357.2|CNS0F7QB Tetraodon nigroviridis full-length cDNA Length = 1085 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 103 tcctgctcacctcctccagtt 123 ||||||||||||||||||||| Sbjct: 729 tcctgctcacctcctccagtt 709
>gb|AC153725.3| Medicago truncatula clone mth2-78c5, complete sequence Length = 137377 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 56 atcatcaaacattctgaaca 75 |||||||||||||||||||| Sbjct: 88283 atcatcaaacattctgaaca 88264
>gb|AC114547.12| Mus musculus chromosome 8, clone RP24-68M15, complete sequence Length = 182611 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 190 aattatcattcttctgatct 209 |||||||||||||||||||| Sbjct: 58706 aattatcattcttctgatct 58725 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,039,539 Number of Sequences: 3902068 Number of extensions: 2039539 Number of successful extensions: 31640 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 17 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 31611 Number of HSP's gapped (non-prelim): 28 length of query: 329 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 307 effective length of database: 17,147,199,772 effective search space: 5264190330004 effective search space used: 5264190330004 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
