ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags10f01 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_479195.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1231 Score = 127 bits (64), Expect = 6e-26 Identities = 161/194 (82%), Gaps = 6/194 (3%) Strand = Plus / Minus Query: 534 ctgtctctgccacgcctcttgtaatcatcaggactagcactacgactcctgctacgacga 593 |||||||||||||| ||| |||||||||||||| | || || ||||||||||||||| Sbjct: 639 ctgtctctgccacgtctcctgtaatcatcaggagtgtagctgcggctcctgctacgacga 580 Query: 594 tgatgatccctctctctgtacctgtcacgtccatatctatctccactccgactgcgactt 653 ||| ||| ||||| || ||||||||||||||||||||||||| |||| ||||| Sbjct: 579 cgataatctctctccctatacctgtcacgtccatatctatctctactc------cgactc 526 Query: 654 cgccttctagaatctctgccccgatgatcatcccggctnccccgtcttggactgcggctt 713 ||| ||||| | ||||| |||||| ||||| ||| ||||||||||||||||||||| Sbjct: 525 cgctttctatagtctctctcccgatagtcatcacggtacccccgtcttggactgcggctt 466 Query: 714 ctggaacgacccct 727 |||||||||||||| Sbjct: 465 ctggaacgacccct 452 Score = 87.7 bits (44), Expect = 5e-14 Identities = 71/80 (88%) Strand = Plus / Minus Query: 446 gcttctgcgtgcgggcgacaaactgtctctgccacccttcctgtcatcaacaggactgta 505 |||||||||||| || |||| |||||||||||||| |||||| |||| ||||| |||| Sbjct: 661 gcttctgcgtgcaggtgacacactgtctctgccacgtctcctgtaatcatcaggagtgta 602 Query: 506 gctgcggctcctgctacgac 525 |||||||||||||||||||| Sbjct: 601 gctgcggctcctgctacgac 582 Score = 63.9 bits (32), Expect = 7e-07 Identities = 47/52 (90%) Strand = Plus / Minus Query: 475 tgccacccttcctgtcatcaacaggactgtagctgcggctcctgctacgact 526 |||||| |||||||| |||| ||||||||||||| || |||||||||||||| Sbjct: 716 tgccacgcttcctgtaatcatcaggactgtagctacgactcctgctacgact 665 Score = 56.0 bits (28), Expect = 2e-04 Identities = 34/36 (94%) Strand = Plus / Minus Query: 419 tggtgtcttgcgaggagagcgactagtgcttctgcg 454 ||||||| |||||||||||||||||| ||||||||| Sbjct: 871 tggtgtcctgcgaggagagcgactagggcttctgcg 836 Score = 54.0 bits (27), Expect = 7e-04 Identities = 45/51 (88%) Strand = Plus / Minus Query: 541 tgccacgcctcttgtaatcatcaggactagcactacgactcctgctacgac 591 |||||||| || |||||||||||||||| ||||||||||||||||||| Sbjct: 716 tgccacgcttcctgtaatcatcaggactgtagctacgactcctgctacgac 666
>dbj|AK070292.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023050C05, full insert sequence Length = 1231 Score = 127 bits (64), Expect = 6e-26 Identities = 161/194 (82%), Gaps = 6/194 (3%) Strand = Plus / Minus Query: 534 ctgtctctgccacgcctcttgtaatcatcaggactagcactacgactcctgctacgacga 593 |||||||||||||| ||| |||||||||||||| | || || ||||||||||||||| Sbjct: 639 ctgtctctgccacgtctcctgtaatcatcaggagtgtagctgcggctcctgctacgacga 580 Query: 594 tgatgatccctctctctgtacctgtcacgtccatatctatctccactccgactgcgactt 653 ||| ||| ||||| || ||||||||||||||||||||||||| |||| ||||| Sbjct: 579 cgataatctctctccctatacctgtcacgtccatatctatctctactc------cgactc 526 Query: 654 cgccttctagaatctctgccccgatgatcatcccggctnccccgtcttggactgcggctt 713 ||| ||||| | ||||| |||||| ||||| ||| ||||||||||||||||||||| Sbjct: 525 cgctttctatagtctctctcccgatagtcatcacggtacccccgtcttggactgcggctt 466 Query: 714 ctggaacgacccct 727 |||||||||||||| Sbjct: 465 ctggaacgacccct 452 Score = 87.7 bits (44), Expect = 5e-14 Identities = 71/80 (88%) Strand = Plus / Minus Query: 446 gcttctgcgtgcgggcgacaaactgtctctgccacccttcctgtcatcaacaggactgta 505 |||||||||||| || |||| |||||||||||||| |||||| |||| ||||| |||| Sbjct: 661 gcttctgcgtgcaggtgacacactgtctctgccacgtctcctgtaatcatcaggagtgta 602 Query: 506 gctgcggctcctgctacgac 525 |||||||||||||||||||| Sbjct: 601 gctgcggctcctgctacgac 582 Score = 63.9 bits (32), Expect = 7e-07 Identities = 47/52 (90%) Strand = Plus / Minus Query: 475 tgccacccttcctgtcatcaacaggactgtagctgcggctcctgctacgact 526 |||||| |||||||| |||| ||||||||||||| || |||||||||||||| Sbjct: 716 tgccacgcttcctgtaatcatcaggactgtagctacgactcctgctacgact 665 Score = 56.0 bits (28), Expect = 2e-04 Identities = 34/36 (94%) Strand = Plus / Minus Query: 419 tggtgtcttgcgaggagagcgactagtgcttctgcg 454 ||||||| |||||||||||||||||| ||||||||| Sbjct: 871 tggtgtcctgcgaggagagcgactagggcttctgcg 836 Score = 54.0 bits (27), Expect = 7e-04 Identities = 45/51 (88%) Strand = Plus / Minus Query: 541 tgccacgcctcttgtaatcatcaggactagcactacgactcctgctacgac 591 |||||||| || |||||||||||||||| ||||||||||||||||||| Sbjct: 716 tgccacgcttcctgtaatcatcaggactgtagctacgactcctgctacgac 666
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 105 bits (53), Expect = 2e-19 Identities = 98/113 (86%) Strand = Plus / Minus Query: 534 ctgtctctgccacgcctcttgtaatcatcaggactagcactacgactcctgctacgacga 593 |||||||||||||| ||| |||||||||||||| | || || ||||||||||||||| Sbjct: 25742223 ctgtctctgccacgtctcctgtaatcatcaggagtgtagctgcggctcctgctacgacga 25742164 Query: 594 tgatgatccctctctctgtacctgtcacgtccatatctatctccactccgact 646 ||| ||| ||||| || ||||||||||||||||||||||||| ||||||||| Sbjct: 25742163 cgataatctctctccctatacctgtcacgtccatatctatctctactccgact 25742111 Score = 69.9 bits (35), Expect = 1e-08 Identities = 35/35 (100%) Strand = Plus / Minus Query: 693 ccccgtcttggactgcggcttctggaacgacccct 727 ||||||||||||||||||||||||||||||||||| Sbjct: 25741619 ccccgtcttggactgcggcttctggaacgacccct 25741585 Score = 67.9 bits (34), Expect = 4e-08 Identities = 52/58 (89%) Strand = Plus / Minus Query: 468 ctgtctctgccacccttcctgtcatcaacaggactgtagctgcggctcctgctacgac 525 ||||||||||||| |||||| |||| ||||| |||||||||||||||||||||||| Sbjct: 25742223 ctgtctctgccacgtctcctgtaatcatcaggagtgtagctgcggctcctgctacgac 25742166 Score = 63.9 bits (32), Expect = 7e-07 Identities = 47/52 (90%) Strand = Plus / Minus Query: 475 tgccacccttcctgtcatcaacaggactgtagctgcggctcctgctacgact 526 |||||| |||||||| |||| ||||||||||||| || |||||||||||||| Sbjct: 25742385 tgccacgcttcctgtaatcatcaggactgtagctacgactcctgctacgact 25742334 Score = 56.0 bits (28), Expect = 2e-04 Identities = 34/36 (94%) Strand = Plus / Minus Query: 419 tggtgtcttgcgaggagagcgactagtgcttctgcg 454 ||||||| |||||||||||||||||| ||||||||| Sbjct: 25742621 tggtgtcctgcgaggagagcgactagggcttctgcg 25742586 Score = 54.0 bits (27), Expect = 7e-04 Identities = 45/51 (88%) Strand = Plus / Minus Query: 541 tgccacgcctcttgtaatcatcaggactagcactacgactcctgctacgac 591 |||||||| || |||||||||||||||| ||||||||||||||||||| Sbjct: 25742385 tgccacgcttcctgtaatcatcaggactgtagctacgactcctgctacgac 25742335
>dbj|AP004341.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0524E08 Length = 154696 Score = 105 bits (53), Expect = 2e-19 Identities = 98/113 (86%) Strand = Plus / Minus Query: 534 ctgtctctgccacgcctcttgtaatcatcaggactagcactacgactcctgctacgacga 593 |||||||||||||| ||| |||||||||||||| | || || ||||||||||||||| Sbjct: 59385 ctgtctctgccacgtctcctgtaatcatcaggagtgtagctgcggctcctgctacgacga 59326 Query: 594 tgatgatccctctctctgtacctgtcacgtccatatctatctccactccgact 646 ||| ||| ||||| || ||||||||||||||||||||||||| ||||||||| Sbjct: 59325 cgataatctctctccctatacctgtcacgtccatatctatctctactccgact 59273 Score = 69.9 bits (35), Expect = 1e-08 Identities = 35/35 (100%) Strand = Plus / Minus Query: 693 ccccgtcttggactgcggcttctggaacgacccct 727 ||||||||||||||||||||||||||||||||||| Sbjct: 58781 ccccgtcttggactgcggcttctggaacgacccct 58747 Score = 67.9 bits (34), Expect = 4e-08 Identities = 52/58 (89%) Strand = Plus / Minus Query: 468 ctgtctctgccacccttcctgtcatcaacaggactgtagctgcggctcctgctacgac 525 ||||||||||||| |||||| |||| ||||| |||||||||||||||||||||||| Sbjct: 59385 ctgtctctgccacgtctcctgtaatcatcaggagtgtagctgcggctcctgctacgac 59328 Score = 63.9 bits (32), Expect = 7e-07 Identities = 47/52 (90%) Strand = Plus / Minus Query: 475 tgccacccttcctgtcatcaacaggactgtagctgcggctcctgctacgact 526 |||||| |||||||| |||| ||||||||||||| || |||||||||||||| Sbjct: 59547 tgccacgcttcctgtaatcatcaggactgtagctacgactcctgctacgact 59496 Score = 56.0 bits (28), Expect = 2e-04 Identities = 34/36 (94%) Strand = Plus / Minus Query: 419 tggtgtcttgcgaggagagcgactagtgcttctgcg 454 ||||||| |||||||||||||||||| ||||||||| Sbjct: 59783 tggtgtcctgcgaggagagcgactagggcttctgcg 59748 Score = 54.0 bits (27), Expect = 7e-04 Identities = 45/51 (88%) Strand = Plus / Minus Query: 541 tgccacgcctcttgtaatcatcaggactagcactacgactcctgctacgac 591 |||||||| || |||||||||||||||| ||||||||||||||||||| Sbjct: 59547 tgccacgcttcctgtaatcatcaggactgtagctacgactcctgctacgac 59497
>gb|AY109571.1| Zea mays CL3161_1 mRNA sequence Length = 1429 Score = 69.9 bits (35), Expect = 1e-08 Identities = 50/55 (90%) Strand = Plus / Plus Query: 268 atgttgaagggctacgagagcctggagaccgctcatcattgcgcctaacaggaga 322 ||||||||||||| || |||| ||||||||| |||||||||||||| |||||||| Sbjct: 672 atgttgaagggctccgtgagcgtggagaccggtcatcattgcgcctgacaggaga 726 Score = 65.9 bits (33), Expect = 2e-07 Identities = 63/73 (86%) Strand = Plus / Plus Query: 439 gactagtgcttctgcgtgcgggcgacaaactgtctctgccacccttcctgtcatcaacag 498 |||||| |||| | ||||| || |||||||||||||| |||| |||| ||| |||| ||| Sbjct: 852 gactagggcttattcgtgcaggagacaaactgtctctcccacgcttcttgtaatcatcag 911 Query: 499 gactgtagctgcg 511 ||||||||||||| Sbjct: 912 gactgtagctgcg 924 Score = 58.0 bits (29), Expect = 4e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 534 ctgtctctgccacgcctcttgtaatcatcagga 566 |||||| |||||||||||||||||||||||||| Sbjct: 797 ctgtctttgccacgcctcttgtaatcatcagga 829 Score = 54.0 bits (27), Expect = 7e-04 Identities = 27/27 (100%) Strand = Plus / Plus Query: 695 ccgtcttggactgcggcttctggaacg 721 ||||||||||||||||||||||||||| Sbjct: 1054 ccgtcttggactgcggcttctggaacg 1080 Score = 54.0 bits (27), Expect = 7e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 534 ctgtctctgccacgcctcttgtaatcatcaggact 568 |||||||| |||||| ||||||||||||||||||| Sbjct: 881 ctgtctctcccacgcttcttgtaatcatcaggact 915 Score = 48.1 bits (24), Expect = 0.041 Identities = 30/32 (93%) Strand = Plus / Plus Query: 318 ggagaccgctcatcattgcgcctaacaggaga 349 |||||||| |||||||||||||| |||||||| Sbjct: 695 ggagaccggtcatcattgcgcctgacaggaga 726
>gb|AY112393.1| Zea mays CL14390_1 mRNA sequence Length = 903 Score = 63.9 bits (32), Expect = 7e-07 Identities = 35/36 (97%) Strand = Plus / Plus Query: 697 gtcttggactgcggcttctggaacgaccccttggct 732 |||||||||||||||||||| ||||||||||||||| Sbjct: 541 gtcttggactgcggcttctgcaacgaccccttggct 576
>gb|AC160929.2| Mus musculus BAC clone RP24-380G7 from chromosome 12, complete sequence Length = 163333 Score = 46.1 bits (23), Expect = 0.16 Identities = 23/23 (100%) Strand = Plus / Minus Query: 191 tcatgataaagcaactgagcagc 213 ||||||||||||||||||||||| Sbjct: 71672 tcatgataaagcaactgagcagc 71650
>dbj|AK018992.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:1700127F24 product:unclassifiable, full insert sequence Length = 600 Score = 46.1 bits (23), Expect = 0.16 Identities = 23/23 (100%) Strand = Plus / Plus Query: 191 tcatgataaagcaactgagcagc 213 ||||||||||||||||||||||| Sbjct: 437 tcatgataaagcaactgagcagc 459
>gb|AC126039.3| Mus musculus BAC clone RP24-234N22 from 12, complete sequence Length = 154037 Score = 46.1 bits (23), Expect = 0.16 Identities = 23/23 (100%) Strand = Plus / Plus Query: 191 tcatgataaagcaactgagcagc 213 ||||||||||||||||||||||| Sbjct: 11586 tcatgataaagcaactgagcagc 11608
>emb|AL137790.4| Human DNA sequence from clone RP5-1003J2 on chromosome 1p12-13.3 Contains 3' end of the gene LOC284462, the KCNC4 gene for a potassium voltage-gated channel from the Shaw-related subfamily member 4, the 3' end of a novel transcript and a CpG island, complete sequence Length = 127409 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 190 ttcatgataaagcaactgagc 210 ||||||||||||||||||||| Sbjct: 107105 ttcatgataaagcaactgagc 107085
>emb|Y16672.1|MSY16672 Medicago sativa mRNA for putative arginine/serine-rich splicing factor, (sclp gene) Length = 1304 Score = 42.1 bits (21), Expect = 2.5 Identities = 42/49 (85%) Strand = Plus / Minus Query: 562 caggactagcactacgactcctgctacgacgatgatgatccctctctct 610 |||||||||||||||| || ||||| || ||| |||| ||||| ||||| Sbjct: 532 caggactagcactacggcttctgcttcggcgacgatggtccctatctct 484
>gb|AC090771.4| Homo sapiens chromosome 18, clone RP11-795H16, complete sequence Length = 186031 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 190 ttcatgataaagcaactgagc 210 ||||||||||||||||||||| Sbjct: 65734 ttcatgataaagcaactgagc 65754
>gb|AC105452.3| Homo sapiens BAC clone RP11-122J10 from 4, complete sequence Length = 154634 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 159 cacaacatttttaatttgtaa 179 ||||||||||||||||||||| Sbjct: 129201 cacaacatttttaatttgtaa 129181
>gb|AC009243.3|AC009243 Genomic sequence for Arabidopsis thaliana BAC F28K19 from chromosome I, complete sequence Length = 110565 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 160 acaacatttttaatttgtaac 180 ||||||||||||||||||||| Sbjct: 31857 acaacatttttaatttgtaac 31837
>emb|CR382130.1| Yarrowia lipolytica chromosome D of strain CLIB122 of Yarrowia lipolytica Length = 3633272 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 157 accacaacatttttaatttgt 177 ||||||||||||||||||||| Sbjct: 1928067 accacaacatttttaatttgt 1928047 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,690,058 Number of Sequences: 3902068 Number of extensions: 5690058 Number of successful extensions: 119031 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 15 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 118918 Number of HSP's gapped (non-prelim): 108 length of query: 732 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 709 effective length of database: 17,143,297,704 effective search space: 12154598072136 effective search space used: 12154598072136 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 21 (42.1 bits)
