ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags10e23
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AF297046.1| Zea mays homocysteine S-methyltransferase-3 mRNA,... 184 6e-44
2gb|AY104031.1| Zea mays PCO134410 mRNA sequence 184 6e-44
3dbj|AK103293.1| Oryza sativa (japonica cultivar-group) cDNA clon... 176 1e-41
4dbj|AK065892.1| Oryza sativa (japonica cultivar-group) cDNA clon... 176 1e-41
5gb|BT018744.1| Zea mays clone EL01N0521F07.d mRNA sequence 174 5e-41
6gb|AF297045.1| Zea mays homocysteine S-methyltransferase-2 mRNA,... 168 3e-39
7dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 100 3e-18
8gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 100 3e-18
9emb|AL731881.4|CNS08C8L Oryza sativa chromosome 12, . BAC OSJNBa... 100 3e-18
10gb|DQ480337.1| Camellia sinensis selenocysteine methyltransferas... 48 0.008
11emb|CR684851.2|CNS0FRDR Tetraodon nigroviridis full-length cDNA 40 2.1
12gb|AC147481.3| Medicago truncatula chromosome 2 BAC clone mth2-1... 40 2.1
13gb|AY665798.1| Cynomys ludovicianus clone D1 microsatellite sequ... 38 8.1
14gb|AY337793.1| Microdontochromis rotundiventralis NADH dehydroge... 38 8.1
15gb|AC129492.6| Homo sapiens chromosome 17, clone RP11-599B13, co... 38 8.1
16emb|AL671986.7| Human DNA sequence from clone RP11-275F13 on chr... 38 8.1
17emb|CR847930.5| Zebrafish DNA sequence from clone DKEY-148H19 in... 38 8.1
18gb|AC107913.7| Homo sapiens chromosome 17, clone CTD-3051C7, com... 38 8.1
19gb|AC104762.7| Homo sapiens chromosome 17, clone RP11-769H22, co... 38 8.1
20gb|AF227810.1| Ictalurus punctatus glyceraldehyde-3-phosphate de... 38 8.1
21emb|BX537287.8| Zebrafish DNA sequence from clone CH211-206O8 in... 38 8.1
22emb|AJ305027.1|HSA305027 Homo sapiens partial ALOX12B gene for a... 38 8.1
23gb|CP000213.1| Drosophila melanogaster genomic scaffold 21100002... 38 8.1
24emb|AL928895.5| Mouse DNA sequence from clone RP23-338J3 on chro... 38 8.1 
>gb|AF297046.1| Zea mays homocysteine S-methyltransferase-3 mRNA, complete cds
          Length = 1583

 Score =  184 bits (93), Expect = 6e-44
 Identities = 149/167 (89%), Gaps = 1/167 (0%)
 Strand = Plus / Minus

                                                                        
Query: 1    gtcctgcagcagcccccgataagggcagccccatctttgcaccactcgcctacataagaa 60
            ||||||||||||||||||||||| |||||||||||||||||||| ||   ||| || |||
Sbjct: 1072 gtcctgcagcagcccccgataagcgcagccccatctttgcaccattcatttacgtacgaa 1013

                                                                        
Query: 61   acgaaatcgccgtctgacacaccagtggattccacccactcctttttctcggcatcatat 120
            || ||||| || ||||||||||||||||||||||||||||||||||| ||  ||||||||
Sbjct: 1012 acaaaatcaccatctgacacaccagtggattccacccactcctttttttcaccatcatat 953

                                                           
Query: 121  ctttctncactgttgggatatatcaanaattggcttgtctgtgacct 167
            |||||  ||||||||||||||||| | ||| ||||||||||||||||
Sbjct: 952  ctttcaccactgttgggatatatc-agaataggcttgtctgtgacct 907
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>gb|AY104031.1| Zea mays PCO134410 mRNA sequence
          Length = 1600

 Score =  184 bits (93), Expect = 6e-44
 Identities = 149/167 (89%), Gaps = 1/167 (0%)
 Strand = Plus / Minus

                                                                        
Query: 1    gtcctgcagcagcccccgataagggcagccccatctttgcaccactcgcctacataagaa 60
            ||||||||||||||||||||||| |||||||||||||||||||| ||   ||| || |||
Sbjct: 1082 gtcctgcagcagcccccgataagcgcagccccatctttgcaccattcatttacgtacgaa 1023

                                                                        
Query: 61   acgaaatcgccgtctgacacaccagtggattccacccactcctttttctcggcatcatat 120
            || ||||| || ||||||||||||||||||||||||||||||||||| ||  ||||||||
Sbjct: 1022 acaaaatcaccatctgacacaccagtggattccacccactcctttttttcaccatcatat 963

                                                           
Query: 121  ctttctncactgttgggatatatcaanaattggcttgtctgtgacct 167
            |||||  ||||||||||||||||| | ||| ||||||||||||||||
Sbjct: 962  ctttcaccactgttgggatatatc-agaataggcttgtctgtgacct 917
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>dbj|AK103293.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033125A08, full
            insert sequence
          Length = 1791

 Score =  176 bits (89), Expect = 1e-41
 Identities = 148/167 (88%), Gaps = 1/167 (0%)
 Strand = Plus / Minus

                                                                        
Query: 1    gtcctgcagcagcccccgataagggcagccccatctttgcaccactcgcctacataagaa 60
            |||||||||||||| || || ||| ||||||||||||||||||| |||  ||| || |||
Sbjct: 1288 gtcctgcagcagccgccaatgaggacagccccatctttgcaccattcgtttacgtaggaa 1229

                                                                        
Query: 61   acgaaatcgccgtctgacacaccagtggattccacccactcctttttctcggcatcatat 120
            || ||||| ||||||||||| ||||| ||||||||||||||||||||||| |||||||||
Sbjct: 1228 acaaaatcaccgtctgacacgccagttgattccacccactcctttttctcagcatcatat 1169

                                                           
Query: 121  ctttctncactgttgggatatatcaanaattggcttgtctgtgacct 167
            |||||| | ||||||||||||||| | ||||||||| ||||||||||
Sbjct: 1168 ctttctccgctgttgggatatatc-agaattggcttatctgtgacct 1123
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>dbj|AK065892.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013044M21, full
            insert sequence
          Length = 1557

 Score =  176 bits (89), Expect = 1e-41
 Identities = 148/167 (88%), Gaps = 1/167 (0%)
 Strand = Plus / Minus

                                                                        
Query: 1    gtcctgcagcagcccccgataagggcagccccatctttgcaccactcgcctacataagaa 60
            |||||||||||||| || || ||| ||||||||||||||||||| |||  ||| || |||
Sbjct: 1059 gtcctgcagcagccgccaatgaggacagccccatctttgcaccattcgtttacgtaggaa 1000

                                                                        
Query: 61   acgaaatcgccgtctgacacaccagtggattccacccactcctttttctcggcatcatat 120
            || ||||| ||||||||||| ||||| ||||||||||||||||||||||| |||||||||
Sbjct: 999  acaaaatcaccgtctgacacgccagttgattccacccactcctttttctcagcatcatat 940

                                                           
Query: 121  ctttctncactgttgggatatatcaanaattggcttgtctgtgacct 167
            |||||| | ||||||||||||||| | ||||||||| ||||||||||
Sbjct: 939  ctttctccgctgttgggatatatc-agaattggcttatctgtgacct 894
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>gb|BT018744.1| Zea mays clone EL01N0521F07.d mRNA sequence
          Length = 1423

 Score =  174 bits (88), Expect = 5e-41
 Identities = 147/166 (88%), Gaps = 1/166 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtcctgcagcagcccccgataagggcagccccatctttgcaccactcgcctacataagaa 60
           ||||||||||||||||||||||| |||||||||||||||||||| ||   ||| || |||
Sbjct: 904 gtcctgcagcagcccccgataagcgcagccccatctttgcaccattcatttacgtacgaa 845

                                                                       
Query: 61  acgaaatcgccgtctgacacaccagtggattccacccactcctttttctcggcatcatat 120
           || ||||| || ||||||||||||||||||||||||||||||||||| ||  ||||||||
Sbjct: 844 acaaaatcaccatctgacacaccagtggattccacccactcctttttttcaccatcatat 785

                                                         
Query: 121 ctttctncactgttgggatatatcaanaattggcttgtctgtgacc 166
           |||||   |||||||||||||||| | ||| |||||||||||||||
Sbjct: 784 ctttcacgactgttgggatatatc-agaataggcttgtctgtgacc 740
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>gb|AF297045.1| Zea mays homocysteine S-methyltransferase-2 mRNA, complete cds
          Length = 1535

 Score =  168 bits (85), Expect = 3e-39
 Identities = 147/167 (88%), Gaps = 1/167 (0%)
 Strand = Plus / Minus

                                                                        
Query: 1    gtcctgcagcagcccccgataagggcagccccatctttgcaccactcgcctacataagaa 60
            |||||||||||||| ||||||||  ||||||| |||||||||||||||   |||||||||
Sbjct: 1057 gtcctgcagcagccaccgataagcacagccccgtctttgcaccactcgttcacataagaa 998

                                                                        
Query: 61   acgaaatcgccgtctgacacaccagtggattccacccactcctttttctcggcatcatat 120
            || ||||| || ||||||||||||||||||||||||||||||||||| ||  |||| |||
Sbjct: 997  acaaaatcaccatctgacacaccagtggattccacccactcctttttttcaccatcgtat 938

                                                           
Query: 121  ctttctncactgttgggatatatcaanaattggcttgtctgtgacct 167
            |||||  ||||||||||||||||| | ||| |||||||| |||||||
Sbjct: 937  ctttcgccactgttgggatatatc-agaatgggcttgtccgtgacct 892
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 99.6 bits (50), Expect = 3e-18
 Identities = 70/76 (92%), Gaps = 1/76 (1%)
 Strand = Plus / Minus

                                                                            
Query: 92       ccacccactcctttttctcggcatcatatctttctncactgttgggatatatcaanaatt 151
                ||||||||||||||||||| ||||||||||||||| | ||||||||||||||| | ||||
Sbjct: 25678089 ccacccactcctttttctcagcatcatatctttctccgctgttgggatatatc-agaatt 25678031

                                
Query: 152      ggcttgtctgtgacct 167
                ||||| ||||||||||
Sbjct: 25678030 ggcttatctgtgacct 25678015



 Score = 81.8 bits (41), Expect = 6e-13
 Identities = 80/93 (86%)
 Strand = Plus / Minus

                                                                            
Query: 1        gtcctgcagcagcccccgataagggcagccccatctttgcaccactcgcctacataagaa 60
                |||||||||||||| || || ||| ||||||||||||||||||| |||  ||| || |||
Sbjct: 25678470 gtcctgcagcagccgccaatgaggacagccccatctttgcaccattcgtttacgtaggaa 25678411

                                                 
Query: 61       acgaaatcgccgtctgacacaccagtggattcc 93
                || ||||| ||||||||||| ||||| ||||||
Sbjct: 25678410 acaaaatcaccgtctgacacgccagttgattcc 25678378
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 99.6 bits (50), Expect = 3e-18
 Identities = 70/76 (92%), Gaps = 1/76 (1%)
 Strand = Plus / Minus

                                                                            
Query: 92       ccacccactcctttttctcggcatcatatctttctncactgttgggatatatcaanaatt 151
                ||||||||||||||||||| ||||||||||||||| | ||||||||||||||| | ||||
Sbjct: 25606265 ccacccactcctttttctcagcatcatatctttctccgctgttgggatatatc-agaatt 25606207

                                
Query: 152      ggcttgtctgtgacct 167
                ||||| ||||||||||
Sbjct: 25606206 ggcttatctgtgacct 25606191



 Score = 81.8 bits (41), Expect = 6e-13
 Identities = 80/93 (86%)
 Strand = Plus / Minus

                                                                            
Query: 1        gtcctgcagcagcccccgataagggcagccccatctttgcaccactcgcctacataagaa 60
                |||||||||||||| || || ||| ||||||||||||||||||| |||  ||| || |||
Sbjct: 25606646 gtcctgcagcagccgccaatgaggacagccccatctttgcaccattcgtttacgtaggaa 25606587

                                                 
Query: 61       acgaaatcgccgtctgacacaccagtggattcc 93
                || ||||| ||||||||||| ||||| ||||||
Sbjct: 25606586 acaaaatcaccgtctgacacgccagttgattcc 25606554
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>emb|AL731881.4|CNS08C8L Oryza sativa chromosome 12, . BAC OSJNBa0002L05 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 167131

 Score = 99.6 bits (50), Expect = 3e-18
 Identities = 70/76 (92%), Gaps = 1/76 (1%)
 Strand = Plus / Minus

                                                                         
Query: 92    ccacccactcctttttctcggcatcatatctttctncactgttgggatatatcaanaatt 151
             ||||||||||||||||||| ||||||||||||||| | ||||||||||||||| | ||||
Sbjct: 45327 ccacccactcctttttctcagcatcatatctttctccgctgttgggatatatc-agaatt 45269

                             
Query: 152   ggcttgtctgtgacct 167
             ||||| ||||||||||
Sbjct: 45268 ggcttatctgtgacct 45253



 Score = 81.8 bits (41), Expect = 6e-13
 Identities = 80/93 (86%)
 Strand = Plus / Minus

                                                                         
Query: 1     gtcctgcagcagcccccgataagggcagccccatctttgcaccactcgcctacataagaa 60
             |||||||||||||| || || ||| ||||||||||||||||||| |||  ||| || |||
Sbjct: 45708 gtcctgcagcagccgccaatgaggacagccccatctttgcaccattcgtttacgtaggaa 45649

                                              
Query: 61    acgaaatcgccgtctgacacaccagtggattcc 93
             || ||||| ||||||||||| ||||| ||||||
Sbjct: 45648 acaaaatcaccgtctgacacgccagttgattcc 45616
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>gb|DQ480337.1| Camellia sinensis selenocysteine methyltransferase mRNA, complete
           cds
          Length = 1368

 Score = 48.1 bits (24), Expect = 0.008
 Identities = 44/51 (86%)
 Strand = Plus / Minus

                                                              
Query: 93  cacccactcctttttctcggcatcatatctttctncactgttgggatatat 143
           ||||||||||||||| || |||||||| || ||  ||||||| ||||||||
Sbjct: 943 cacccactcctttttatcagcatcataactctcaccactgtttggatatat 893
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>emb|CR684851.2|CNS0FRDR Tetraodon nigroviridis full-length cDNA
          Length = 1005

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 98  actcctttttctcggcatcatatc 121
           ||||||||||||||||||| ||||
Sbjct: 646 actcctttttctcggcatcgtatc 623
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>gb|AC147481.3| Medicago truncatula chromosome 2 BAC clone mth2-138b18, complete
             sequence
          Length = 128810

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 91    tccacccactcctttttctc 110
             ||||||||||||||||||||
Sbjct: 94115 tccacccactcctttttctc 94134
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>gb|AY665798.1| Cynomys ludovicianus clone D1 microsatellite sequence
          Length = 743

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 85  gtggattccacccactccttttt 107
           ||||||||| |||||||||||||
Sbjct: 60  gtggattcctcccactccttttt 38
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>gb|AY337793.1| Microdontochromis rotundiventralis NADH dehydrogenase subunit 2
           (ND2) gene, complete cds; mitochondrial gene for
           mitochondrial product
          Length = 1047

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 10  cagcccccgataagggcag 28
           |||||||||||||||||||
Sbjct: 497 cagcccccgataagggcag 479
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>gb|AC129492.6| Homo sapiens chromosome 17, clone RP11-599B13, complete sequence
          Length = 196037

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 78    cacaccagtggattccacc 96
             |||||||||||||||||||
Sbjct: 72803 cacaccagtggattccacc 72821
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>emb|AL671986.7| Human DNA sequence from clone RP11-275F13 on chromosome 1 Contains the
             5' end of the C1orf34 gene for chromosome 1 open reading
             frame 34, a novel gene, the 3' end of the EPS15 gene for
             epidermal growth factor receptor pathway substrate 15 and
             a proteasome (prosome macropain) 26S subunit non-ATPase 7
             (Mov34 homolog) (PSMD7) pseudogene, complete sequence
          Length = 113813

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 90    ttccacccactcctttttc 108
             |||||||||||||||||||
Sbjct: 62460 ttccacccactcctttttc 62442
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>emb|CR847930.5| Zebrafish DNA sequence from clone DKEY-148H19 in linkage group 19,
              complete sequence
          Length = 167262

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 89     attccacccactccttttt 107
              |||||||||||||||||||
Sbjct: 141231 attccacccactccttttt 141213
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>gb|AC107913.7| Homo sapiens chromosome 17, clone CTD-3051C7, complete sequence
          Length = 128953

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 78    cacaccagtggattccacc 96
             |||||||||||||||||||
Sbjct: 45291 cacaccagtggattccacc 45273
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>gb|AC104762.7| Homo sapiens chromosome 17, clone RP11-769H22, complete sequence
          Length = 162678

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 78    cacaccagtggattccacc 96
             |||||||||||||||||||
Sbjct: 72803 cacaccagtggattccacc 72821
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>gb|AF227810.1| Ictalurus punctatus glyceraldehyde-3-phosphate dehydrogenase mRNA,
           partial cds
          Length = 528

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 77  acacaccagtggattccac 95
           |||||||||||||||||||
Sbjct: 346 acacaccagtggattccac 328
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>emb|BX537287.8| Zebrafish DNA sequence from clone CH211-206O8 in linkage group 19,
             complete sequence
          Length = 195505

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 89    attccacccactccttttt 107
             |||||||||||||||||||
Sbjct: 76931 attccacccactccttttt 76949
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>emb|AJ305027.1|HSA305027 Homo sapiens partial ALOX12B gene for arachidonate 12R-lipoxygenase,
            exons 3 to 14 and partial ALOX15P pseudogene for
            arachidonate 15-lipoxygenase, exons 11 to 14
          Length = 13652

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 78   cacaccagtggattccacc 96
            |||||||||||||||||||
Sbjct: 5590 cacaccagtggattccacc 5572
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>gb|CP000213.1| Drosophila melanogaster genomic scaffold 211000022280725
          Length = 226945

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 100    tcctttttctcggcatcat 118
              |||||||||||||||||||
Sbjct: 133544 tcctttttctcggcatcat 133562
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>emb|AL928895.5| Mouse DNA sequence from clone RP23-338J3 on chromosome 2, complete
            sequence
          Length = 120507

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 90   ttccacccactcctttttc 108
            |||||||||||||||||||
Sbjct: 4797 ttccacccactcctttttc 4779


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,194,039
Number of Sequences: 3902068
Number of extensions: 1194039
Number of successful extensions: 66868
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 66821
Number of HSP's gapped (non-prelim): 44
length of query: 167
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 145
effective length of database: 17,147,199,772
effective search space: 2486343966940
effective search space used: 2486343966940
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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