ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags10e22
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_194082.1| Oryza sativa (japonica cultivar-group), mRNA 117 4e-23
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 117 4e-23
3gb|AC092781.6| Oryza sativa chromosome 3 BAC OSJNBb0094O03 genom... 117 4e-23
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 117 4e-23
5dbj|AK102670.1| Oryza sativa (japonica cultivar-group) cDNA clon... 117 4e-23
6ref|XM_476541.1| Oryza sativa (japonica cultivar-group), mRNA 111 3e-21
7dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 111 3e-21
8dbj|AP004338.4| Oryza sativa (japonica cultivar-group) genomic D... 111 3e-21
9dbj|AP003742.3| Oryza sativa (japonica cultivar-group) genomic D... 111 3e-21
10gb|BT018380.1| Zea mays clone EL01N0307H04.d mRNA sequence 103 7e-19
11gb|DQ013804.1| Phyllostachys praecox RLK1 mRNA, partial cds 88 4e-14
12ref|XM_470602.1| Oryza sativa (japonica cultivar-group), predic... 70 9e-09
13gb|AC099732.2| Oryza sativa (japonica cultivar-group) chromosome... 70 9e-09
14dbj|AK121286.1| Oryza sativa (japonica cultivar-group) cDNA clon... 66 1e-07
15gb|AY110099.1| Zea mays CL3491_1 mRNA sequence 64 6e-07
16gb|AC136217.4| Oryza sativa (japonica cultivar-group) chromosome... 44 0.53
17gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome 44 0.53
18gb|AF229441.2| Sinorhizobium fredii strain USDA257 Y4xI (y4xI), ... 44 0.53
19emb|AL606691.4|OSJN00081 Oryza sativa genomic DNA, chromosome 4,... 44 0.53
20dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.53
21dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.53
22emb|AL442105.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 44 0.53
23gb|AC144455.5| Oryza sativa (japonica cultivar-group) chromosome... 44 0.53
24gb|AY146588.1| Triticum monococcum BAC clone 453N11, complete se... 42 2.1
25gb|AC132450.3| Mus musculus BAC clone RP23-187N8 from chromosome... 42 2.1
26gb|AC124926.7| Rattus norvegicus X BAC CH230-155H3 (Children's H... 42 2.1
27gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome 42 2.1
28emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome comple... 42 2.1
29ref|XM_450172.1| Oryza sativa (japonica cultivar-group), mRNA 40 8.2
30gb|DQ356948.1| Crocodilepox virus, complete genome 40 8.2
31gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome 40 8.2
32ref|XM_848992.1| PREDICTED: Canis familiaris similar to prothymo... 40 8.2
33gb|DQ160197.1| Homo sapiens RAD51-like 1 (S. cerevisiae) (RAD51L... 40 8.2
34ref|XM_860979.1| PREDICTED: Canis familiaris hypothetical protei... 40 8.2
35emb|CR931997.1| Corynebacterium jeikeium K411 complete genome 40 8.2
36ref|XM_382712.1| Gibberella zeae PH-1 chromosome 1 conserved hyp... 40 8.2
37gb|AC132277.3| Mus musculus BAC clone RP24-344C7 from chromosome... 40 8.2
38emb|CR974448.6| Pig DNA sequence from clone CH242-250F12 on chro... 40 8.2
39gb|AC182460.2| Gallus gallus BAC clone CH261-132N3 from chromoso... 40 8.2
40gb|AC177806.2| Gallus gallus BAC clone CH261-13L12 from chromoso... 40 8.2
41dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.2
42dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.2
43dbj|AP005583.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.2
44dbj|AP005582.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.2
45dbj|AP003629.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.2
46emb|AL442183.4|CNS07ECU Human chromosome 14 DNA sequence BAC R-4... 40 8.2
47emb|AL583809.3|CNS07EFY Human chromosome 14 DNA sequence BAC R-7... 40 8.2
48emb|AL831739.10| Mouse DNA sequence from clone RP23-395O3 on chr... 40 8.2
49emb|AL133370.4|CNS01DUV Human chromosome 14 DNA sequence BAC C-2... 40 8.2
50emb|AL844209.6| Mouse DNA sequence from clone RP23-105M20 on chr... 40 8.2 
>ref|NM_194082.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3510

 Score =  117 bits (59), Expect = 4e-23
 Identities = 106/122 (86%)
 Strand = Plus / Minus

                                                                        
Query: 470  ccttggctggcagctggctttgggagctcgctcaggatctgcacaacctcccgcatcgtc 529
            ||||| |||| |||| ||||||| |||||||| |||||||| |||||||||||||| || 
Sbjct: 2933 ccttgcctgggagctagctttggaagctcgctgaggatctgtacaacctcccgcattgtt 2874

                                                                        
Query: 530  gggcgctgcacgctgtgctcctcggtgcagagcaaggcgacgtanaagacgtgcatcacc 589
            || ||||||||||| ||||||||  |||||||||| ||||| || ||||||||||| |||
Sbjct: 2873 ggacgctgcacgctctgctcctcaatgcagagcaaagcgacatagaagacgtgcatgacc 2814

              
Query: 590  tc 591
            ||
Sbjct: 2813 tc 2812



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 56/67 (83%)
 Strand = Plus / Minus

                                                                        
Query: 311  atgctgatgagatcaggaggaggcgacgactccgagcttgtgtgctgctgctgatgatct 370
            |||||||||||||||||||| |  |  ||||| ||  |||| ||||||||||| ||||||
Sbjct: 3086 atgctgatgagatcaggaggtgtagttgactctgaatttgtttgctgctgctgttgatct 3027

                   
Query: 371  tttgcat 377
            || ||||
Sbjct: 3026 ttcgcat 3020
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  117 bits (59), Expect = 4e-23
 Identities = 106/122 (86%)
 Strand = Plus / Minus

                                                                            
Query: 470      ccttggctggcagctggctttgggagctcgctcaggatctgcacaacctcccgcatcgtc 529
                ||||| |||| |||| ||||||| |||||||| |||||||| |||||||||||||| || 
Sbjct: 31777987 ccttgcctgggagctagctttggaagctcgctgaggatctgtacaacctcccgcattgtt 31777928

                                                                            
Query: 530      gggcgctgcacgctgtgctcctcggtgcagagcaaggcgacgtanaagacgtgcatcacc 589
                || ||||||||||| ||||||||  |||||||||| ||||| || ||||||||||| |||
Sbjct: 31777927 ggacgctgcacgctctgctcctcaatgcagagcaaagcgacatagaagacgtgcatgacc 31777868

                  
Query: 590      tc 591
                ||
Sbjct: 31777867 tc 31777866



 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 76/90 (84%)
 Strand = Plus / Plus

                                                                           
Query: 505     gatctgcacaacctcccgcatcgtcgggcgctgcacgctgtgctcctcggtgcagagcaa 564
               ||||||||| ||||||||||||||||| ||||  ||||| |||||  ||  ||| |||| 
Sbjct: 6773303 gatctgcacgacctcccgcatcgtcggccgctcgacgctctgctcggcgacgcacagcat 6773362

                                             
Query: 565     ggcgacgtanaagacgtgcatcacctcgtg 594
               ||||||||| ||||||||| ||| ||||||
Sbjct: 6773363 ggcgacgtagaagacgtgcgtcagctcgtg 6773392



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 56/67 (83%)
 Strand = Plus / Minus

                                                                            
Query: 311      atgctgatgagatcaggaggaggcgacgactccgagcttgtgtgctgctgctgatgatct 370
                |||||||||||||||||||| |  |  ||||| ||  |||| ||||||||||| ||||||
Sbjct: 31778140 atgctgatgagatcaggaggtgtagttgactctgaatttgtttgctgctgctgttgatct 31778081

                       
Query: 371      tttgcat 377
                || ||||
Sbjct: 31778080 ttcgcat 31778074
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>gb|AC092781.6| Oryza sativa chromosome 3 BAC OSJNBb0094O03 genomic sequence, complete
              sequence
          Length = 134496

 Score =  117 bits (59), Expect = 4e-23
 Identities = 106/122 (86%)
 Strand = Plus / Minus

                                                                          
Query: 470    ccttggctggcagctggctttgggagctcgctcaggatctgcacaacctcccgcatcgtc 529
              ||||| |||| |||| ||||||| |||||||| |||||||| |||||||||||||| || 
Sbjct: 103213 ccttgcctgggagctagctttggaagctcgctgaggatctgtacaacctcccgcattgtt 103154

                                                                          
Query: 530    gggcgctgcacgctgtgctcctcggtgcagagcaaggcgacgtanaagacgtgcatcacc 589
              || ||||||||||| ||||||||  |||||||||| ||||| || ||||||||||| |||
Sbjct: 103153 ggacgctgcacgctctgctcctcaatgcagagcaaagcgacatagaagacgtgcatgacc 103094

                
Query: 590    tc 591
              ||
Sbjct: 103093 tc 103092



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 56/67 (83%)
 Strand = Plus / Minus

                                                                          
Query: 311    atgctgatgagatcaggaggaggcgacgactccgagcttgtgtgctgctgctgatgatct 370
              |||||||||||||||||||| |  |  ||||| ||  |||| ||||||||||| ||||||
Sbjct: 103366 atgctgatgagatcaggaggtgtagttgactctgaatttgtttgctgctgctgttgatct 103307

                     
Query: 371    tttgcat 377
              || ||||
Sbjct: 103306 ttcgcat 103300
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  117 bits (59), Expect = 4e-23
 Identities = 106/122 (86%)
 Strand = Plus / Minus

                                                                            
Query: 470      ccttggctggcagctggctttgggagctcgctcaggatctgcacaacctcccgcatcgtc 529
                ||||| |||| |||| ||||||| |||||||| |||||||| |||||||||||||| || 
Sbjct: 31868503 ccttgcctgggagctagctttggaagctcgctgaggatctgtacaacctcccgcattgtt 31868444

                                                                            
Query: 530      gggcgctgcacgctgtgctcctcggtgcagagcaaggcgacgtanaagacgtgcatcacc 589
                || ||||||||||| ||||||||  |||||||||| ||||| || ||||||||||| |||
Sbjct: 31868443 ggacgctgcacgctctgctcctcaatgcagagcaaagcgacatagaagacgtgcatgacc 31868384

                  
Query: 590      tc 591
                ||
Sbjct: 31868383 tc 31868382



 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 76/90 (84%)
 Strand = Plus / Plus

                                                                           
Query: 505     gatctgcacaacctcccgcatcgtcgggcgctgcacgctgtgctcctcggtgcagagcaa 564
               ||||||||| ||||||||||||||||| ||||  ||||| |||||  ||  ||| |||| 
Sbjct: 6772516 gatctgcacgacctcccgcatcgtcggccgctcgacgctctgctcggcgacgcacagcat 6772575

                                             
Query: 565     ggcgacgtanaagacgtgcatcacctcgtg 594
               ||||||||| ||||||||| ||| ||||||
Sbjct: 6772576 ggcgacgtagaagacgtgcgtcagctcgtg 6772605



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 56/67 (83%)
 Strand = Plus / Minus

                                                                            
Query: 311      atgctgatgagatcaggaggaggcgacgactccgagcttgtgtgctgctgctgatgatct 370
                |||||||||||||||||||| |  |  ||||| ||  |||| ||||||||||| ||||||
Sbjct: 31868656 atgctgatgagatcaggaggtgtagttgactctgaatttgtttgctgctgctgttgatct 31868597

                       
Query: 371      tttgcat 377
                || ||||
Sbjct: 31868596 ttcgcat 31868590
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>dbj|AK102670.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033101P17, full
            insert sequence
          Length = 3031

 Score =  117 bits (59), Expect = 4e-23
 Identities = 106/122 (86%)
 Strand = Plus / Minus

                                                                        
Query: 470  ccttggctggcagctggctttgggagctcgctcaggatctgcacaacctcccgcatcgtc 529
            ||||| |||| |||| ||||||| |||||||| |||||||| |||||||||||||| || 
Sbjct: 2503 ccttgcctgggagctagctttggaagctcgctgaggatctgtacaacctcccgcattgtt 2444

                                                                        
Query: 530  gggcgctgcacgctgtgctcctcggtgcagagcaaggcgacgtanaagacgtgcatcacc 589
            || ||||||||||| ||||||||  |||||||||| ||||| || ||||||||||| |||
Sbjct: 2443 ggacgctgcacgctctgctcctcaatgcagagcaaagcgacatagaagacgtgcatgacc 2384

              
Query: 590  tc 591
            ||
Sbjct: 2383 tc 2382



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 56/67 (83%)
 Strand = Plus / Minus

                                                                        
Query: 311  atgctgatgagatcaggaggaggcgacgactccgagcttgtgtgctgctgctgatgatct 370
            |||||||||||||||||||| |  |  ||||| ||  |||| ||||||||||| ||||||
Sbjct: 2656 atgctgatgagatcaggaggtgtagttgactctgaatttgtttgctgctgctgttgatct 2597

                   
Query: 371  tttgcat 377
            || ||||
Sbjct: 2596 ttcgcat 2590
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>ref|XM_476541.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3072

 Score =  111 bits (56), Expect = 3e-21
 Identities = 103/119 (86%)
 Strand = Plus / Minus

                                                                        
Query: 485  ggctttgggagctcgctcaggatctgcacaacctcccgcatcgtcgggcgctgcacgctg 544
            ||||| || ||||| || ||||||||||| ||||||| ||| ||||| ||||||||||| 
Sbjct: 2915 ggcttgggaagctcactgaggatctgcaccacctccctcattgtcggtcgctgcacgctc 2856

                                                                       
Query: 545  tgctcctcggtgcagagcaaggcgacgtanaagacgtgcatcacctcgtgcaccggcac 603
            |||||||||  ||| ||||| |||||||| ||||||||||| |||||||| ||||||||
Sbjct: 2855 tgctcctcgacgcaaagcaatgcgacgtagaagacgtgcatgacctcgtggaccggcac 2797
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score =  111 bits (56), Expect = 3e-21
 Identities = 103/119 (86%)
 Strand = Plus / Plus

                                                                           
Query: 485     ggctttgggagctcgctcaggatctgcacaacctcccgcatcgtcgggcgctgcacgctg 544
               ||||| || ||||| || ||||||||||| ||||||| ||| ||||| ||||||||||| 
Sbjct: 1845051 ggcttgggaagctcactgaggatctgcaccacctccctcattgtcggtcgctgcacgctc 1845110

                                                                          
Query: 545     tgctcctcggtgcagagcaaggcgacgtanaagacgtgcatcacctcgtgcaccggcac 603
               |||||||||  ||| ||||| |||||||| ||||||||||| |||||||| ||||||||
Sbjct: 1845111 tgctcctcgacgcaaagcaatgcgacgtagaagacgtgcatgacctcgtggaccggcac 1845169
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>dbj|AP004338.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0507H12
          Length = 143030

 Score =  111 bits (56), Expect = 3e-21
 Identities = 103/119 (86%)
 Strand = Plus / Plus

                                                                         
Query: 485   ggctttgggagctcgctcaggatctgcacaacctcccgcatcgtcgggcgctgcacgctg 544
             ||||| || ||||| || ||||||||||| ||||||| ||| ||||| ||||||||||| 
Sbjct: 49630 ggcttgggaagctcactgaggatctgcaccacctccctcattgtcggtcgctgcacgctc 49689

                                                                        
Query: 545   tgctcctcggtgcagagcaaggcgacgtanaagacgtgcatcacctcgtgcaccggcac 603
             |||||||||  ||| ||||| |||||||| ||||||||||| |||||||| ||||||||
Sbjct: 49690 tgctcctcgacgcaaagcaatgcgacgtagaagacgtgcatgacctcgtggaccggcac 49748
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>dbj|AP003742.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1118_D07
          Length = 131449

 Score =  111 bits (56), Expect = 3e-21
 Identities = 103/119 (86%)
 Strand = Plus / Plus

                                                                         
Query: 485   ggctttgggagctcgctcaggatctgcacaacctcccgcatcgtcgggcgctgcacgctg 544
             ||||| || ||||| || ||||||||||| ||||||| ||| ||||| ||||||||||| 
Sbjct: 97270 ggcttgggaagctcactgaggatctgcaccacctccctcattgtcggtcgctgcacgctc 97329

                                                                        
Query: 545   tgctcctcggtgcagagcaaggcgacgtanaagacgtgcatcacctcgtgcaccggcac 603
             |||||||||  ||| ||||| |||||||| ||||||||||| |||||||| ||||||||
Sbjct: 97330 tgctcctcgacgcaaagcaatgcgacgtagaagacgtgcatgacctcgtggaccggcac 97388
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>gb|BT018380.1| Zea mays clone EL01N0307H04.d mRNA sequence
          Length = 1381

 Score =  103 bits (52), Expect = 7e-19
 Identities = 105/123 (85%)
 Strand = Plus / Minus

                                                                       
Query: 482 gctggctttgggagctcgctcaggatctgcacaacctcccgcatcgtcgggcgctgcacg 541
           |||||||| ||||||||||  || |||||||| |||||||||||||| ||||||||||||
Sbjct: 752 gctggcttggggagctcgccgagcatctgcaccacctcccgcatcgtggggcgctgcacg 693

                                                                       
Query: 542 ctgtgctcctcggtgcagagcaaggcgacgtanaagacgtgcatcacctcgtgcaccggc 601
           || ||||||||   |||||| |  |||||| | || ||||||  ||||||||||||||||
Sbjct: 692 ctctgctcctccacgcagaggagcgcgacgcagaacacgtgcgccacctcgtgcaccggc 633

              
Query: 602 acg 604
           |||
Sbjct: 632 acg 630



 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 307 tcagatgctgatgagatcag 326
           ||||||||||||||||||||
Sbjct: 936 tcagatgctgatgagatcag 917
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>gb|DQ013804.1| Phyllostachys praecox RLK1 mRNA, partial cds
          Length = 2776

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 91/107 (85%)
 Strand = Plus / Minus

                                                                        
Query: 494  agctcgctcaggatctgcacaacctcccgcatcgtcgggcgctgcacgctgtgctcctcg 553
            ||||| || ||||| ||||| ||||||||||| || || ||||||||||| |||||||| 
Sbjct: 2243 agctcactgaggatttgcaccacctcccgcattgtaggtcgctgcacgctctgctcctca 2184

                                                           
Query: 554  gtgcagagcaaggcgacgtanaagacgtgcatcacctcgtgcaccgg 600
               || ||||||||||| || ||||||||||| ||||||||||||||
Sbjct: 2183 acacaaagcaaggcgacatagaagacgtgcattacctcgtgcaccgg 2137



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 42/44 (95%)
 Strand = Plus / Minus

                                                        
Query: 307  tcagatgctgatgagatcaggaggaggcgacgactccgagcttg 350
            |||||||||||||||||||||||||||||| |||| ||||||||
Sbjct: 2415 tcagatgctgatgagatcaggaggaggcgaagactgcgagcttg 2372
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>ref|XM_470602.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3006

 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 76/90 (84%)
 Strand = Plus / Minus

                                                                        
Query: 505  gatctgcacaacctcccgcatcgtcgggcgctgcacgctgtgctcctcggtgcagagcaa 564
            ||||||||| ||||||||||||||||| ||||  ||||| |||||  ||  ||| |||| 
Sbjct: 2859 gatctgcacgacctcccgcatcgtcggccgctcgacgctctgctcggcgacgcacagcat 2800

                                          
Query: 565  ggcgacgtanaagacgtgcatcacctcgtg 594
            ||||||||| ||||||||| ||| ||||||
Sbjct: 2799 ggcgacgtagaagacgtgcgtcagctcgtg 2770
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>gb|AC099732.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1203D03,
             complete sequence
          Length = 82352

 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 76/90 (84%)
 Strand = Plus / Minus

                                                                         
Query: 505   gatctgcacaacctcccgcatcgtcgggcgctgcacgctgtgctcctcggtgcagagcaa 564
             ||||||||| ||||||||||||||||| ||||  ||||| |||||  ||  ||| |||| 
Sbjct: 51442 gatctgcacgacctcccgcatcgtcggccgctcgacgctctgctcggcgacgcacagcat 51383

                                           
Query: 565   ggcgacgtanaagacgtgcatcacctcgtg 594
             ||||||||| ||||||||| ||| ||||||
Sbjct: 51382 ggcgacgtagaagacgtgcgtcagctcgtg 51353
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>dbj|AK121286.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023108P09, full
            insert sequence
          Length = 3313

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 71/84 (84%)
 Strand = Plus / Minus

                                                                        
Query: 505  gatctgcacaacctcccgcatcgtcgggcgctgcacgctgtgctcctcggtgcagagcaa 564
            ||||||||| ||||||||||||||||| ||||  ||||| |||||  ||  ||| |||| 
Sbjct: 2910 gatctgcacgacctcccgcatcgtcggccgctcgacgctctgctcggcgacgcacagcat 2851

                                    
Query: 565  ggcgacgtanaagacgtgcatcac 588
            ||||||||| ||||||||| ||||
Sbjct: 2850 ggcgacgtagaagacgtgcgtcac 2827
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>gb|AY110099.1| Zea mays CL3491_1 mRNA sequence
          Length = 736

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 41/44 (93%)
 Strand = Plus / Plus

                                                       
Query: 488 tttgggagctcgctcaggatctgcacaacctcccgcatcgtcgg 531
           ||||| |||||||||||||||||||| ||||||| |||||||||
Sbjct: 687 tttggaagctcgctcaggatctgcaccacctccctcatcgtcgg 730
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>gb|AC136217.4| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0030I14,
              complete sequence
          Length = 159035

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 40/46 (86%)
 Strand = Plus / Plus

                                                            
Query: 506    atctgcacaacctcccgcatcgtcgggcgctgcacgctgtgctcct 551
              |||||||| ||||| ||||| || |||||||  |||||||||||||
Sbjct: 105560 atctgcacgacctcgcgcatggtggggcgctcgacgctgtgctcct 105605
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>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome
          Length = 3345170

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 520    ccgcatcgtcgggcgctgcacg 541
              ||||||||||||||||||||||
Sbjct: 811163 ccgcatcgtcgggcgctgcacg 811142
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>gb|AF229441.2| Sinorhizobium fredii strain USDA257 Y4xI (y4xI), Y4xJ (y4xJ), Y4xK
            (y4xK), Y4xL (y4xL), Y4xM (y4xM), Y4xN (y4xN), Y4xO
            (y4xO), Y4xP (y4xP), Y4yA (y4yA), Y4yB (y4yB), nodulation
            protein NolX (nolX), NolW (nolW), NolB (nolB), NolT
            (nolT), NolU (nolU), NolV (nolV), Y4yI (y4yI), Y4yJ
            (y4yJ), Y4yK (y4yK), Y4yL (y4yL), Y4yM (y4yM), Y4yN
            (y4yN), Y4yO (y4yO), Y4yP (y4yP), Y4yQ (y4yQ), and Y4yR
            (y4yR) genes, complete cds
          Length = 31230

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 520  ccgcatcgtcgggcgctgcacg 541
            ||||||||||||||||||||||
Sbjct: 3966 ccgcatcgtcgggcgctgcacg 3945
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>emb|AL606691.4|OSJN00081 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0060N03,
              complete sequence
          Length = 179798

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 448    aggaagctcttcctctccatca 469
              ||||||||||||||||||||||
Sbjct: 111185 aggaagctcttcctctccatca 111164
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 448      aggaagctcttcctctccatca 469
                ||||||||||||||||||||||
Sbjct: 30843664 aggaagctcttcctctccatca 30843643
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 40/46 (86%)
 Strand = Plus / Plus

                                                              
Query: 506      atctgcacaacctcccgcatcgtcgggcgctgcacgctgtgctcct 551
                |||||||| ||||| ||||| || |||||||  |||||||||||||
Sbjct: 29457535 atctgcacgacctcgcgcatggtggggcgctcgacgctgtgctcct 29457580
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>emb|AL442105.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0702G05, complete
             sequence
          Length = 134586

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 448   aggaagctcttcctctccatca 469
             ||||||||||||||||||||||
Sbjct: 20914 aggaagctcttcctctccatca 20893
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>gb|AC144455.5| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0086G17, complete sequence
          Length = 134631

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 40/46 (86%)
 Strand = Plus / Plus

                                                           
Query: 506   atctgcacaacctcccgcatcgtcgggcgctgcacgctgtgctcct 551
             |||||||| ||||| ||||| || |||||||  |||||||||||||
Sbjct: 41805 atctgcacgacctcgcgcatggtggggcgctcgacgctgtgctcct 41850
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>gb|AY146588.1| Triticum monococcum BAC clone 453N11, complete sequence
          Length = 285444

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 449   ggaagctcttcctctccatca 469
             |||||||||||||||||||||
Sbjct: 70166 ggaagctcttcctctccatca 70186
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>gb|AC132450.3| Mus musculus BAC clone RP23-187N8 from chromosome 18, complete sequence
          Length = 201282

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 353   tgctgctgctgatgatctttt 373
             |||||||||||||||||||||
Sbjct: 60471 tgctgctgctgatgatctttt 60451
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>gb|AC124926.7| Rattus norvegicus X BAC CH230-155H3 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 217309

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 473   tggctggcagctggctttggg 493
             |||||||||||||||||||||
Sbjct: 70559 tggctggcagctggctttggg 70579
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>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
          Length = 7074893

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 524    atcgtcgggcgctgcacgctg 544
              |||||||||||||||||||||
Sbjct: 516495 atcgtcgggcgctgcacgctg 516515
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>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 580     gtgcatcacctcgtgcaccggcacg 604
               ||||||||||||||||||| |||||
Sbjct: 2702368 gtgcatcacctcgtgcaccagcacg 2702344
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>ref|XM_450172.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 555

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 353 tgctgctgctgatgatcttt 372
           ||||||||||||||||||||
Sbjct: 291 tgctgctgctgatgatcttt 310
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>gb|DQ356948.1| Crocodilepox virus, complete genome
          Length = 190054

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 535   ctgcacgctgtgctcctcgg 554
             ||||||||||||||||||||
Sbjct: 51240 ctgcacgctgtgctcctcgg 51259
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>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome
          Length = 5650368

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 353     tgctgctgctgatgatcttt 372
               ||||||||||||||||||||
Sbjct: 3536994 tgctgctgctgatgatcttt 3537013
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>ref|XM_848992.1| PREDICTED: Canis familiaris similar to prothymosin, alpha (gene
           sequence 28) (LOC611335), mRNA
          Length = 1560

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 454 ctcttcctctccatcacctt 473
           ||||||||||||||||||||
Sbjct: 735 ctcttcctctccatcacctt 716
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>gb|DQ160197.1| Homo sapiens RAD51-like 1 (S. cerevisiae) (RAD51L1) gene, complete cds
          Length = 660392

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 474    ggctggcagctggctttgggagct 497
              |||||||||||| |||||||||||
Sbjct: 257853 ggctggcagctgcctttgggagct 257876
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>ref|XM_860979.1| PREDICTED: Canis familiaris hypothetical protein LOC610128
           (LOC610128), mRNA
          Length = 1220

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 454 ctcttcctctccatcacctt 473
           ||||||||||||||||||||
Sbjct: 401 ctcttcctctccatcacctt 382
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>emb|CR931997.1| Corynebacterium jeikeium K411 complete genome
          Length = 2462499

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 352     gtgctgctgctgatgatctt 371
               ||||||||||||||||||||
Sbjct: 2360925 gtgctgctgctgatgatctt 2360906
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>ref|XM_382712.1| Gibberella zeae PH-1 chromosome 1 conserved hypothetical protein
            (FG02536.1) partial mRNA
          Length = 7113

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 104  agtaccttgactacaccact 123
            ||||||||||||||||||||
Sbjct: 5150 agtaccttgactacaccact 5169
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>gb|AC132277.3| Mus musculus BAC clone RP24-344C7 from chromosome 9, complete sequence
          Length = 175852

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 188   ctggaagtcttagacaccccacca 211
             ||||||| ||||||||||||||||
Sbjct: 80903 ctggaaggcttagacaccccacca 80880
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>emb|CR974448.6| Pig DNA sequence from clone CH242-250F12 on chromosome 17, complete
             sequence
          Length = 57884

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 452   agctcttcctctccatcacc 471
             ||||||||||||||||||||
Sbjct: 49048 agctcttcctctccatcacc 49029
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>gb|AC182460.2| Gallus gallus BAC clone CH261-132N3 from chromosome ul, complete sequence
          Length = 212965

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 347    cttgtgtgctgctgctgatg 366
              ||||||||||||||||||||
Sbjct: 161723 cttgtgtgctgctgctgatg 161742
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>gb|AC177806.2| Gallus gallus BAC clone CH261-13L12 from chromosome ul, complete
             sequence
          Length = 250495

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 347   cttgtgtgctgctgctgatg 366
             ||||||||||||||||||||
Sbjct: 90944 cttgtgtgctgctgctgatg 90963
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 353     tgctgctgctgatgatcttt 372
               ||||||||||||||||||||
Sbjct: 2594048 tgctgctgctgatgatcttt 2594067
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                                
Query: 343      cgagcttgtgtgctgctgctgatgatcttttg 374
                ||||||||||||||| ||| | ||||||||||
Sbjct: 23538129 cgagcttgtgtgctgttgccgttgatcttttg 23538160
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>dbj|AP005583.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0406E03
          Length = 201069

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 353    tgctgctgctgatgatcttt 372
              ||||||||||||||||||||
Sbjct: 180638 tgctgctgctgatgatcttt 180657
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>dbj|AP005582.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0006E02
          Length = 141782

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 353   tgctgctgctgatgatcttt 372
             ||||||||||||||||||||
Sbjct: 39326 tgctgctgctgatgatcttt 39345
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>dbj|AP003629.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0481H08
          Length = 146841

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 343   cgagcttgtgtgctgctgctgatgatcttttg 374
             ||||||||||||||| ||| | ||||||||||
Sbjct: 19093 cgagcttgtgtgctgttgccgttgatcttttg 19124
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>emb|AL442183.4|CNS07ECU Human chromosome 14 DNA sequence BAC R-477N13 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 173260

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 100   ctagagtaccttgactacac 119
             ||||||||||||||||||||
Sbjct: 40036 ctagagtaccttgactacac 40055
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>emb|AL583809.3|CNS07EFY Human chromosome 14 DNA sequence BAC R-736L22 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 171699

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 100    ctagagtaccttgactacac 119
              ||||||||||||||||||||
Sbjct: 165748 ctagagtaccttgactacac 165767
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>emb|AL831739.10| Mouse DNA sequence from clone RP23-395O3 on chromosome 4, complete
             sequence
          Length = 121869

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 344   gagcttgtgtgctgctgctgatga 367
             |||||||||||||| |||||||||
Sbjct: 43275 gagcttgtgtgctgttgctgatga 43252
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>emb|AL133370.4|CNS01DUV Human chromosome 14 DNA sequence BAC C-2566J3 of library CalTech-D from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 155822

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 474   ggctggcagctggctttgggagct 497
             |||||||||||| |||||||||||
Sbjct: 53398 ggctggcagctgcctttgggagct 53375
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>emb|AL844209.6| Mouse DNA sequence from clone RP23-105M20 on chromosome 2, complete
              sequence
          Length = 200361

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 454    ctcttcctctccatcacctt 473
              ||||||||||||||||||||
Sbjct: 119875 ctcttcctctccatcacctt 119894


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,805,080
Number of Sequences: 3902068
Number of extensions: 4805080
Number of successful extensions: 91364
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 90834
Number of HSP's gapped (non-prelim): 524
length of query: 606
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 583
effective length of database: 17,143,297,704
effective search space: 9994542561432
effective search space used: 9994542561432
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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