ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags10e19 |
|---|---|
| Clone Library Name | barley_pub |
>SF3A3_MOUSE (Q9D554) Splicing factor 3A subunit 3 (Spliceosome-associated| protein 61) (SAP 61) (SF3a60) Length = 501 Score = 193 bits (491), Expect = 4e-49 Identities = 79/125 (63%), Positives = 100/125 (80%) Frame = -1 Query: 558 IYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNHSYWGRRAYERHFKEWRHQHGMR 379 IYNP LP+GWDGKPIPYWLYKLHGL + CEICGN++Y G +A++RHF EWRH HGMR Sbjct: 377 IYNPKNLPLGWDGKPIPYWLYKLHGLNINYNCEICGNYTYRGPKAFQRHFAEWRHAHGMR 436 Query: 378 CLGIPNTKNFNEITSIEEAKALWERIQSKQGLNKWRPDLEEEYEDKDGNIYNKKTYTDLQ 199 CLGIPNT +F +T IE+A +LW +++ ++ +W+PD EEEYED GN+ NKKTY DL+ Sbjct: 437 CLGIPNTAHFANVTQIEDAVSLWAKLKLQKASERWQPDTEEEYEDSSGNVVNKKTYEDLK 496 Query: 198 RQGLI 184 RQGL+ Sbjct: 497 RQGLL 501
>SF3A3_HUMAN (Q12874) Splicing factor 3A subunit 3 (Spliceosome-associated| protein 61) (SAP 61) (SF3a60) Length = 501 Score = 193 bits (491), Expect = 4e-49 Identities = 79/125 (63%), Positives = 100/125 (80%) Frame = -1 Query: 558 IYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNHSYWGRRAYERHFKEWRHQHGMR 379 IYNP LP+GWDGKPIPYWLYKLHGL + CEICGN++Y G +A++RHF EWRH HGMR Sbjct: 377 IYNPKNLPLGWDGKPIPYWLYKLHGLNINYNCEICGNYTYRGPKAFQRHFAEWRHAHGMR 436 Query: 378 CLGIPNTKNFNEITSIEEAKALWERIQSKQGLNKWRPDLEEEYEDKDGNIYNKKTYTDLQ 199 CLGIPNT +F +T IE+A +LW +++ ++ +W+PD EEEYED GN+ NKKTY DL+ Sbjct: 437 CLGIPNTAHFANVTQIEDAVSLWAKLKLQKASERWQPDTEEEYEDSSGNVVNKKTYEDLK 496 Query: 198 RQGLI 184 RQGL+ Sbjct: 497 RQGLL 501
>NOI_DROME (O46106) Splicing factor 3A subunit 3 (Protein noisette)| Length = 503 Score = 186 bits (471), Expect = 8e-47 Identities = 84/169 (49%), Positives = 107/169 (63%) Frame = -1 Query: 690 LDEVIVRTKENAEKKLTLTYXXXXXXXXXXXXXXXXXXXXXXQQIYNPLKLPMGWDGKPI 511 L E TKEN ++K T YNP LP+GWDGKPI Sbjct: 335 LSEQRAATKENVQRKQARTGGERDDSDVEASESDNEDDPDADDVPYNPKNLPLGWDGKPI 394 Query: 510 PYWLYKLHGLGQEFKCEICGNHSYWGRRAYERHFKEWRHQHGMRCLGIPNTKNFNEITSI 331 PYWLYKLHGL + CEICGN +Y G +A++RHF EWRH HGMRCLGIPNT +F +T I Sbjct: 395 PYWLYKLHGLNISYNCEICGNFTYKGPKAFQRHFAEWRHAHGMRCLGIPNTAHFANVTQI 454 Query: 330 EEAKALWERIQSKQGLNKWRPDLEEEYEDKDGNIYNKKTYTDLQRQGLI 184 E+A LWE+++S++ +W D EEE+ED GN+ N+KT+ DL+RQGL+ Sbjct: 455 EDAITLWEKLKSQKQSERWVADQEEEFEDSLGNVVNRKTFEDLKRQGLL 503
>PRP9_YEAST (P19736) Pre-mRNA-splicing factor PRP9| Length = 530 Score = 130 bits (326), Expect = 5e-30 Identities = 62/133 (46%), Positives = 86/133 (64%), Gaps = 14/133 (10%) Frame = -1 Query: 540 LPMGWDGKPIPYWLYKLHGLGQEFKCEICGNHSYWGRRAYERHFKEWRHQHGMRCLGIPN 361 +P+G DG P+PYWLYKLHGL +E++CEIC N Y GRR +ERHF E RH + +RCLGI Sbjct: 398 MPLGPDGLPMPYWLYKLHGLDREYRCEICSNKVYNGRRTFERHFNEERHIYHLRCLGIEP 457 Query: 360 TKNFNEITSIEEAKALWERIQSKQGLN--------------KWRPDLEEEYEDKDGNIYN 223 + F IT I+EA+ LW+ +Q + L K +LE E ED++GN+ + Sbjct: 458 SSVFKGITKIKEAQELWKNMQGQSQLTSIAAVPPKPNPSQLKVPTELELEEEDEEGNVMS 517 Query: 222 KKTYTDLQRQGLI 184 KK Y +L++QGL+ Sbjct: 518 KKVYDELKKQGLV 530
>ARI3A_HUMAN (Q99856) AT-rich interactive domain-containing protein 3A (ARID| domain-containing protein 3A) (B-cell regulator of IgH transcription) (Bright) (E2F-binding protein 1) Length = 593 Score = 33.1 bits (74), Expect = 0.82 Identities = 13/43 (30%), Positives = 26/43 (60%) Frame = -1 Query: 366 PNTKNFNEITSIEEAKALWERIQSKQGLNKWRPDLEEEYEDKD 238 P ++F ++ S E+ K WE + ++ L + + EE+YED++ Sbjct: 109 PGEEHFEDMASDEDMKPKWEEEEMEEDLGEDEEEEEEDYEDEE 151
>PRDM5_MOUSE (Q9CXE0) PR domain zinc finger protein 5 (PR domain-containing| protein 5) Length = 599 Score = 32.3 bits (72), Expect = 1.4 Identities = 22/67 (32%), Positives = 34/67 (50%) Frame = -1 Query: 477 QEFKCEICGNHSYWGRRAYERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKALWERIQ 298 +EFKCE CG + R+A +RHF+ QH C G E + +A + +R++ Sbjct: 197 KEFKCENCGK-KFPVRQALQRHFE----QHRKACRG--------EARFVCKADSCGKRLK 243 Query: 297 SKQGLNK 277 SK L + Sbjct: 244 SKDALRR 250
>DIP2_YEAST (Q12220) DOM34-interacting protein 2 (U3 small nucleolar| RNA-associated protein 12) (U3 snoRNA-associated protein 12) Length = 943 Score = 32.3 bits (72), Expect = 1.4 Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 1/77 (1%) Frame = -1 Query: 471 FKCEICGNHSYWGRRAYERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKALWERIQSK 292 F C YW +E K + HQ + L + F +S + + +WE + + Sbjct: 631 FSCSKDAVVKYWDGEKFECIQKLYAHQSEVWALAVATDGGFVVSSSHDHSIRIWEETEDQ 690 Query: 291 QGLNKWR-PDLEEEYED 244 L + + +LEE+YED Sbjct: 691 VFLEEEKEKELEEQYED 707
>IKAR_ONCMY (O13089) DNA-binding protein Ikaros| Length = 522 Score = 32.0 bits (71), Expect = 1.8 Identities = 17/46 (36%), Positives = 27/46 (58%) Frame = -1 Query: 495 KLHGLGQEFKCEICGNHSYWGRRAYERHFKEWRHQHGMRCLGIPNT 358 + H +G+ KC CG SY R + E H KE H + ++C+G+ N+ Sbjct: 201 RTHSVGKPHKCAYCG-RSYKQRSSLEEH-KERCHNY-LQCMGLQNS 243
>Y1369_METJA (Q58764) Hypothetical protein MJ1369| Length = 155 Score = 31.6 bits (70), Expect = 2.4 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 3/40 (7%) Frame = -1 Query: 507 YWLYKLHGLGQEFKCEICGNHSYWG---RRAYERHFKEWR 397 YWL+ + + EIC NH WG R A E+ K WR Sbjct: 8 YWLFSSNNIRN---IEICYNHMIWGFWDRNAGEKQKKNWR 44
>HGFA_MOUSE (Q9R098) Hepatocyte growth factor activator precursor (EC 3.4.21.-)| (HGF activator) (HGFA) [Contains: Hepatocyte growth factor activator short chain; Hepatocyte growth factor activator long chain] Length = 653 Score = 31.2 bits (69), Expect = 3.1 Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 10/69 (14%) Frame = -2 Query: 611 GKRKKYKLIVKVMMKTNKSTTPSSYPWVGT---GNLYLIGSISFTVLV-------RNSSA 462 GKR K + ++ + S+ P S+PW+ GN + GS+ T V NS Sbjct: 393 GKRHKKRTFLRPRIIGGSSSLPGSHPWLAAIYIGNSFCAGSLVHTCWVVSAAHCFANSPP 452 Query: 461 KYAVTTVTG 435 + ++T V G Sbjct: 453 RDSITVVLG 461
>LY75_HUMAN (O60449) Lymphocyte antigen 75 precursor (DEC-205) (gp200-MR6)| (CD205 antigen) Length = 1722 Score = 30.8 bits (68), Expect = 4.1 Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 4/81 (4%) Frame = -1 Query: 396 HQHGMRCLGIPNTKNFNEIT--SIEEAKALWERIQ--SKQGLNKWRPDLEEEYEDKDGNI 229 H H +CLG+ TK+ NE+ S + + LW + + S G ++R L KDG+ Sbjct: 77 HLHSQKCLGLDITKSVNELRMFSCDSSAMLWWKCEHHSLYGAARYRLAL------KDGHG 130 Query: 228 YNKKTYTDLQRQGLI*NSGCD 166 +D+ ++G S CD Sbjct: 131 TAISNASDVWKKGGSEESLCD 151
>RIR1_NEUCR (Q9UW15) Ribonucleoside-diphosphate reductase large chain (EC| 1.17.4.1) (Ribonucleotide reductase large subunit) Length = 929 Score = 30.4 bits (67), Expect = 5.3 Identities = 15/51 (29%), Positives = 29/51 (56%) Frame = -1 Query: 303 IQSKQGLNKWRPDLEEEYEDKDGNIYNKKTYTDLQRQGLI*NSGCDSSALE 151 ++ K+G N+ D++E+ +++D NIY+ ++ Q N G D S+ E Sbjct: 878 LERKEGQNE---DVDEDSQERDENIYSNAPLSEQQVAACAWNPGADPSSCE 925
>NOE1_RAT (Q62609) Noelin precursor (Neuronal olfactomedin-related ER| localized protein) (Olfactomedin-1) (Pancortin) (1B426B) Length = 485 Score = 30.0 bits (66), Expect = 7.0 Identities = 16/55 (29%), Positives = 27/55 (49%) Frame = -2 Query: 602 KKYKLIVKVMMKTNKSTTPSSYPWVGTGNLYLIGSISFTVLVRNSSAKYAVTTVT 438 ++YK +V M N ++ +PW GTG + GSI F + ++ + T T Sbjct: 275 REYKSMVDFMNTDNFTSHRLPHPWSGTGQVVYNGSIYFNKFQSHIIIRFDLKTET 329
>NOE1_HUMAN (Q99784) Noelin precursor (Neuronal olfactomedin-related ER| localized protein) (Olfactomedin-1) Length = 485 Score = 30.0 bits (66), Expect = 7.0 Identities = 16/55 (29%), Positives = 27/55 (49%) Frame = -2 Query: 602 KKYKLIVKVMMKTNKSTTPSSYPWVGTGNLYLIGSISFTVLVRNSSAKYAVTTVT 438 ++YK +V M N ++ +PW GTG + GSI F + ++ + T T Sbjct: 275 REYKSMVDFMNTDNFTSHRLPHPWSGTGQVVYNGSIYFNKFQSHIIIRFDLKTET 329
>VC04_VACCC (P21038) Protein C4| Length = 316 Score = 29.6 bits (65), Expect = 9.1 Identities = 11/41 (26%), Positives = 21/41 (51%) Frame = -1 Query: 369 IPNTKNFNEITSIEEAKALWERIQSKQGLNKWRPDLEEEYE 247 +PNTK + + + W+ + + G N W P ++EY+ Sbjct: 231 LPNTKELFTLRNDDGRNIAWDNDKLESGNNTWIPKTDDEYK 271
>VC04_VACCV (P17370) Protein C4| Length = 315 Score = 29.6 bits (65), Expect = 9.1 Identities = 11/41 (26%), Positives = 21/41 (51%) Frame = -1 Query: 369 IPNTKNFNEITSIEEAKALWERIQSKQGLNKWRPDLEEEYE 247 +PNTK + + + W+ + + G N W P ++EY+ Sbjct: 230 LPNTKELFTLRNDDGRNIAWDNDKLESGNNTWIPKTDDEYK 270 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 97,813,251 Number of Sequences: 219361 Number of extensions: 2028274 Number of successful extensions: 5724 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 5374 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5720 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6882837918 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
