ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags10e02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|BT009545.1| Triticum aestivum clone wr1.pk148.e12:fis, full i... 563 e-157
2ref|XM_470138.1| Oryza sativa (japonica cultivar-group), mRNA 103 8e-19
3dbj|AK105744.1| Oryza sativa (japonica cultivar-group) cDNA clon... 103 8e-19
4dbj|AK058941.1| Oryza sativa (japonica cultivar-group) cDNA clon... 103 8e-19
5gb|AY542311.1| Sorghum bicolor clone SB20O07 b1-1, b1-2, putativ... 96 2e-16
6ref|XM_470137.1| Oryza sativa (japonica cultivar-group), mRNA 78 5e-11
7gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 78 5e-11
8dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 78 5e-11
9gb|AC104433.8| Oryza sativa chromosome 3 BAC OJ1754_E06 genomic ... 78 5e-11
10ref|XM_473455.1| Oryza sativa (japonica cultivar-group), predic... 74 7e-10
11emb|X80820.1|ZMABP1F Z.mays ABP1 mRNA for actin-depolymerizing f... 74 7e-10
12dbj|AK069329.1| Oryza sativa (japonica cultivar-group) cDNA clon... 74 7e-10
13gb|AY112267.1| Zea mays CL5157_2 mRNA sequence 74 7e-10
14gb|AY104025.1| Zea mays PCO095832 mRNA sequence 74 7e-10
15emb|X97726.1|ZMABP3 Z.mays ZmABP3 mRNA for actin depolymerizing ... 72 3e-09
16emb|X97725.1|ZMABP2 Z.mays ZmABP2 mRNA for actin depolymerizing ... 72 3e-09
17gb|AY109068.1| Zea mays PCO068743 mRNA sequence 68 4e-08
18gb|BT016543.1| Zea mays clone Contig376 mRNA sequence 64 7e-07
19gb|BT018082.1| Zea mays clone EL01N0552A09.c mRNA sequence 64 7e-07
20gb|AY103749.1| Zea mays PCO115125 mRNA sequence 64 7e-07
21emb|AL606647.3|OSJN00096 Oryza sativa genomic DNA, chromosome 4,... 62 3e-06
22dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 62 3e-06
23ref|XM_478113.1| Oryza sativa (japonica cultivar-group), mRNA 58 4e-05
24dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 58 4e-05
25dbj|AP005465.5| Oryza sativa (japonica cultivar-group) genomic D... 58 4e-05
26dbj|AK072662.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 4e-05
27dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.003
28dbj|AP004037.3| Oryza sativa (japonica cultivar-group) genomic D... 52 0.003
29dbj|AK069605.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.003
30gb|U58278.1|TAU58278 Triticum aestivum actin-binding protein WCO... 48 0.042
31gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete... 44 0.65
32gb|AC135102.16| Medicago truncatula clone mth2-8m3, complete seq... 44 0.65
33gb|AC141106.9| Medicago truncatula clone mth2-33e18, complete se... 44 0.65
34gb|AC157758.4| Medicago truncatula clone mth2-62b13, complete se... 44 0.65
35dbj|AP004908.1| Lotus japonicus genomic DNA, chromosome 6, clone... 44 0.65
36gb|AC115883.13| Mus musculus chromosome 3, clone RP24-376N4, com... 42 2.6
37ref|XM_811053.1| Trypanosoma cruzi strain CL Brener hypothetical... 42 2.6

>gb|BT009545.1| Triticum aestivum clone wr1.pk148.e12:fis, full insert mRNA
           sequence
          Length = 2114

 Score =  563 bits (284), Expect = e-157
 Identities = 323/336 (96%)
 Strand = Plus / Plus

                                                                       
Query: 279 tagtgtgcgcgctccttgatcacgtccaggctgatttcgctggggtcggtggcctgcatc 338
           ||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 288 tagtgcgcgcgctccttgatcacgtcgaggctcatttcgctggggtcggtggcctgcatc 347

                                                                       
Query: 339 tcgatctggatgccgtccagggtcctcttgaacttctcgttggtgcttgcgtacgtcatc 398
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 348 tcgatctggatgccgtccagggtcctcttgaacttctcgttggtgctcgcgtacgtcatc 407

                                                                       
Query: 399 ttgctcctcacctttgcggtgtctggggaccagaagatatagaagatcctgctctttggc 458
           ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 408 ttgctcctcacctttgccgtgtcgggggaccagaagatatagaagatcctgctctttggc 467

                                                                       
Query: 459 acatcctccggggtggtgaagtcgaagtcaaacactgcgaatcggcagtcgttttcaggg 518
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 468 acatcctccggggtggtgaagtcgaagtcaaacactgcgaatcggcagtcgttctcaggg 527

                                                                       
Query: 519 agggtcttggtgaaatcctcataggtggcatcgcgctgcccggtttggtccacaatgacc 578
           |||||||||||||| ||||||||||| || || |||| ||| ||||||||||||||||||
Sbjct: 528 agggtcttggtgaagtcctcataggttgcctcacgctccccagtttggtccacaatgacc 587

                                               
Query: 579 tccttctggttctccagcctgtaggttatgaagcgg 614
           ||||||||||||||||||||||||||||||||||||
Sbjct: 588 tccttctggttctccagcctgtaggttatgaagcgg 623



 Score =  145 bits (73), Expect = 2e-31
 Identities = 76/77 (98%)
 Strand = Plus / Plus

                                                                       
Query: 137 ctttcgacacggtaacaaagccacaaatcatcaagaaagtttcaagagtcacaccgccaa 196
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 ctttcgacacggtaacaaagccacaaatcatcaagaaagtttcaagagtcacaccgccaa 237

                            
Query: 197 atctataattgacataa 213
           ||||||| |||||||||
Sbjct: 238 atctatatttgacataa 254



 Score = 77.8 bits (39), Expect = 5e-11
 Identities = 89/103 (86%), Gaps = 7/103 (6%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttaattatttataaccg-aacttggaagaacagtgcag-----cagcataacgcccgg 54
           ||||||||||||||||||| ||||||||||||||||||||     |||||||| ||||||
Sbjct: 37  atttaattatttataaccgtaacttggaagaacagtgcagtgcagcagcataaggcccgg 96

                                                      
Query: 55  catataaatgggcagcggaagaaggaacggattacatgataga 97
           ||||| ||||||||   ||| || |||| ||||||||||||||
Sbjct: 97  catatcaatgggcacaagaa-aaagaacagattacatgataga 138



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>ref|XM_470138.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 778

 Score =  103 bits (52), Expect = 8e-19
 Identities = 67/72 (93%)
 Strand = Plus / Minus

                                                                       
Query: 395 catcttgctcctcacctttgcggtgtctggggaccagaagatatagaagatcctgctctt 454
           ||||||||||||||| |||||  ||||||||||||| ||||||||||| |||||||||||
Sbjct: 438 catcttgctcctcacttttgcattgtctggggaccataagatatagaatatcctgctctt 379

                       
Query: 455 tggcacatcctc 466
           ||||||||||||
Sbjct: 378 tggcacatcctc 367



 Score = 52.0 bits (26), Expect = 0.003
 Identities = 53/62 (85%)
 Strand = Plus / Minus

                                                                       
Query: 603 gttatgaagcggtgcatcctcttggacttgagctccacgaacctcagcttgcagtcgtca 662
           |||||||||||||||||||| |||||||  |||||   |||| |||||||||| || |||
Sbjct: 227 gttatgaagcggtgcatccttttggactgtagctcattgaacttcagcttgcaatcatca 168

             
Query: 663 tg 664
           ||
Sbjct: 167 tg 166



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>dbj|AK105744.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-B04, full
            insert sequence
          Length = 2390

 Score =  103 bits (52), Expect = 8e-19
 Identities = 67/72 (93%)
 Strand = Plus / Minus

                                                                        
Query: 395  catcttgctcctcacctttgcggtgtctggggaccagaagatatagaagatcctgctctt 454
            ||||||||||||||| |||||  ||||||||||||| ||||||||||| |||||||||||
Sbjct: 2047 catcttgctcctcacttttgcattgtctggggaccataagatatagaatatcctgctctt 1988

                        
Query: 455  tggcacatcctc 466
            ||||||||||||
Sbjct: 1987 tggcacatcctc 1976



 Score = 52.0 bits (26), Expect = 0.003
 Identities = 53/62 (85%)
 Strand = Plus / Minus

                                                                        
Query: 603  gttatgaagcggtgcatcctcttggacttgagctccacgaacctcagcttgcagtcgtca 662
            |||||||||||||||||||| |||||||  |||||   |||| |||||||||| || |||
Sbjct: 1836 gttatgaagcggtgcatccttttggactgtagctcattgaacttcagcttgcaatcatca 1777

              
Query: 663  tg 664
            ||
Sbjct: 1776 tg 1775



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>dbj|AK058941.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-009-H02, full
           insert sequence
          Length = 758

 Score =  103 bits (52), Expect = 8e-19
 Identities = 67/72 (93%)
 Strand = Plus / Minus

                                                                       
Query: 395 catcttgctcctcacctttgcggtgtctggggaccagaagatatagaagatcctgctctt 454
           ||||||||||||||| |||||  ||||||||||||| ||||||||||| |||||||||||
Sbjct: 420 catcttgctcctcacttttgcattgtctggggaccataagatatagaatatcctgctctt 361

                       
Query: 455 tggcacatcctc 466
           ||||||||||||
Sbjct: 360 tggcacatcctc 349



 Score = 52.0 bits (26), Expect = 0.003
 Identities = 53/62 (85%)
 Strand = Plus / Minus

                                                                       
Query: 603 gttatgaagcggtgcatcctcttggacttgagctccacgaacctcagcttgcagtcgtca 662
           |||||||||||||||||||| |||||||  |||||   |||| |||||||||| || |||
Sbjct: 209 gttatgaagcggtgcatccttttggactgtagctcattgaacttcagcttgcaatcatca 150

             
Query: 663 tg 664
           ||
Sbjct: 149 tg 148



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>gb|AY542311.1| Sorghum bicolor clone SB20O07 b1-1, b1-2, putative genetic modifier,
              hypothetical protein, putative NAM protein, putative
              cis-zeatin O-glucosyltransferases, putative small nuclear
              ribonucleoprotein, putative cis-zeatin
              O-glucosyltransferase, putative glutathione peroxidase,
              putative copper-exporting ATPases, putative
              serine/threonine dehydratase, and putative actin
              depolymerizing factor genes, complete cds; and hypothetical
              protein gene, partial cds
          Length = 157237

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 108/128 (84%)
 Strand = Plus / Minus

                                                                          
Query: 302    gtccaggctgatttcgctggggtcggtggcctgcatctcgatctggatgccgtccagggt 361
              ||||| ||| || |||||||||||||||||||||| ||| | |||||||||||||||   
Sbjct: 148416 gtccatgctcatctcgctggggtcggtggcctgcagctccacctggatgccgtccagctc 148357

                                                                          
Query: 362    cctcttgaacttctcgttggtgcttgcgtacgtcatcttgctcctcacctttgcggtgtc 421
              ||||||||||   || |||| ||| ||||||  |||||||||||||||||| | ||||||
Sbjct: 148356 cctcttgaaccggtccttggagctcgcgtacagcatcttgctcctcaccttcgaggtgtc 148297

                      
Query: 422    tggggacc 429
               |||||||
Sbjct: 148296 cggggacc 148289



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>ref|XM_470137.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 703

 Score = 77.8 bits (39), Expect = 5e-11
 Identities = 99/119 (83%)
 Strand = Plus / Minus

                                                                       
Query: 291 tccttgatcacgtccaggctgatttcgctggggtcggtggcctgcatctcgatctggatg 350
           ||||||| |||||| ||| |||  ||||||||||||||||||||||  |||||||||| |
Sbjct: 533 tccttgagcacgtcgagggtgagctcgctggggtcggtggcctgcaggtcgatctggacg 474

                                                                      
Query: 351 ccgtccagggtcctcttgaacttctcgttggtgcttgcgtacgtcatcttgctcctcac 409
           ||||| ||   | ||||||||   ||||||| ||| ||||||  |||||||||||||||
Sbjct: 473 ccgtcgagctccttcttgaacccttcgttggagctcgcgtacaccatcttgctcctcac 415



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 77.8 bits (39), Expect = 5e-11
 Identities = 99/119 (83%)
 Strand = Plus / Minus

                                                                            
Query: 291      tccttgatcacgtccaggctgatttcgctggggtcggtggcctgcatctcgatctggatg 350
                ||||||| |||||| ||| |||  ||||||||||||||||||||||  |||||||||| |
Sbjct: 34127301 tccttgagcacgtcgagggtgagctcgctggggtcggtggcctgcaggtcgatctggacg 34127242

                                                                           
Query: 351      ccgtccagggtcctcttgaacttctcgttggtgcttgcgtacgtcatcttgctcctcac 409
                ||||| ||   | ||||||||   ||||||| ||| ||||||  |||||||||||||||
Sbjct: 34127241 ccgtcgagctccttcttgaacccttcgttggagctcgcgtacaccatcttgctcctcac 34127183



 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 38/40 (95%)
 Strand = Plus / Minus

                                                        
Query: 427      accagaagatatagaagatcctgctctttggcacatcctc 466
                |||| ||||||||||| |||||||||||||||||||||||
Sbjct: 34129842 accataagatatagaatatcctgctctttggcacatcctc 34129803



 Score = 52.0 bits (26), Expect = 0.003
 Identities = 53/62 (85%)
 Strand = Plus / Minus

                                                                            
Query: 603      gttatgaagcggtgcatcctcttggacttgagctccacgaacctcagcttgcagtcgtca 662
                |||||||||||||||||||| |||||||  |||||   |||| |||||||||| || |||
Sbjct: 34129663 gttatgaagcggtgcatccttttggactgtagctcattgaacttcagcttgcaatcatca 34129604

                  
Query: 663      tg 664
                ||
Sbjct: 34129603 tg 34129602



 Score = 46.1 bits (23), Expect = 0.16
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                   
Query: 395      catcttgctcctcacctttgcggtgtctggggacc 429
                ||||||||||||||| |||||  ||||||||||||
Sbjct: 34129963 catcttgctcctcacttttgcattgtctggggacc 34129929



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 77.8 bits (39), Expect = 5e-11
 Identities = 99/119 (83%)
 Strand = Plus / Minus

                                                                            
Query: 291      tccttgatcacgtccaggctgatttcgctggggtcggtggcctgcatctcgatctggatg 350
                ||||||| |||||| ||| |||  ||||||||||||||||||||||  |||||||||| |
Sbjct: 34217773 tccttgagcacgtcgagggtgagctcgctggggtcggtggcctgcaggtcgatctggacg 34217714

                                                                           
Query: 351      ccgtccagggtcctcttgaacttctcgttggtgcttgcgtacgtcatcttgctcctcac 409
                ||||| ||   | ||||||||   ||||||| ||| ||||||  |||||||||||||||
Sbjct: 34217713 ccgtcgagctccttcttgaacccttcgttggagctcgcgtacaccatcttgctcctcac 34217655



 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 38/40 (95%)
 Strand = Plus / Minus

                                                        
Query: 427      accagaagatatagaagatcctgctctttggcacatcctc 466
                |||| ||||||||||| |||||||||||||||||||||||
Sbjct: 34220314 accataagatatagaatatcctgctctttggcacatcctc 34220275



 Score = 52.0 bits (26), Expect = 0.003
 Identities = 53/62 (85%)
 Strand = Plus / Minus

                                                                            
Query: 603      gttatgaagcggtgcatcctcttggacttgagctccacgaacctcagcttgcagtcgtca 662
                |||||||||||||||||||| |||||||  |||||   |||| |||||||||| || |||
Sbjct: 34220135 gttatgaagcggtgcatccttttggactgtagctcattgaacttcagcttgcaatcatca 34220076

                  
Query: 663      tg 664
                ||
Sbjct: 34220075 tg 34220074



 Score = 46.1 bits (23), Expect = 0.16
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                   
Query: 395      catcttgctcctcacctttgcggtgtctggggacc 429
                ||||||||||||||| |||||  ||||||||||||
Sbjct: 34220435 catcttgctcctcacttttgcattgtctggggacc 34220401



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>gb|AC104433.8| Oryza sativa chromosome 3 BAC OJ1754_E06 genomic sequence, complete
             sequence
          Length = 163828

 Score = 77.8 bits (39), Expect = 5e-11
 Identities = 99/119 (83%)
 Strand = Plus / Minus

                                                                         
Query: 291   tccttgatcacgtccaggctgatttcgctggggtcggtggcctgcatctcgatctggatg 350
             ||||||| |||||| ||| |||  ||||||||||||||||||||||  |||||||||| |
Sbjct: 91113 tccttgagcacgtcgagggtgagctcgctggggtcggtggcctgcaggtcgatctggacg 91054

                                                                        
Query: 351   ccgtccagggtcctcttgaacttctcgttggtgcttgcgtacgtcatcttgctcctcac 409
             ||||| ||   | ||||||||   ||||||| ||| ||||||  |||||||||||||||
Sbjct: 91053 ccgtcgagctccttcttgaacccttcgttggagctcgcgtacaccatcttgctcctcac 90995



 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 38/40 (95%)
 Strand = Plus / Minus

                                                     
Query: 427   accagaagatatagaagatcctgctctttggcacatcctc 466
             |||| ||||||||||| |||||||||||||||||||||||
Sbjct: 93654 accataagatatagaatatcctgctctttggcacatcctc 93615



 Score = 52.0 bits (26), Expect = 0.003
 Identities = 53/62 (85%)
 Strand = Plus / Minus

                                                                         
Query: 603   gttatgaagcggtgcatcctcttggacttgagctccacgaacctcagcttgcagtcgtca 662
             |||||||||||||||||||| |||||||  |||||   |||| |||||||||| || |||
Sbjct: 93475 gttatgaagcggtgcatccttttggactgtagctcattgaacttcagcttgcaatcatca 93416

               
Query: 663   tg 664
             ||
Sbjct: 93415 tg 93414



 Score = 46.1 bits (23), Expect = 0.16
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                
Query: 395   catcttgctcctcacctttgcggtgtctggggacc 429
             ||||||||||||||| |||||  ||||||||||||
Sbjct: 93775 catcttgctcctcacttttgcattgtctggggacc 93741



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>ref|XM_473455.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 420

 Score = 73.8 bits (37), Expect = 7e-10
 Identities = 124/153 (81%)
 Strand = Plus / Minus

                                                                       
Query: 302 gtccaggctgatttcgctggggtcggtggcctgcatctcgatctggatgccgtccagggt 361
           ||||| ||| || |||||||| ||||| ||||||| ||| | |||||| ||||||||   
Sbjct: 396 gtccatgctcatctcgctgggatcggtcgcctgcagctccacctggatcccgtccagctc 337

                                                                       
Query: 362 cctcttgaacttctcgttggtgcttgcgtacgtcatcttgctcctcacctttgcggtgtc 421
           ||||||||||   || |||| ||| ||||||  |||||||||||||||||| |  |||||
Sbjct: 336 cctcttgaaccggtccttggagctcgcgtacagcatcttgctcctcaccttcgacgtgtc 277

                                            
Query: 422 tggggaccagaagatatagaagatcctgctctt 454
            || |||||| ||||  |||||||| |||||||
Sbjct: 276 cggcgaccaggagatgaagaagatcttgctctt 244



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>emb|X80820.1|ZMABP1F Z.mays ABP1 mRNA for actin-depolymerizing factor
          Length = 589

 Score = 73.8 bits (37), Expect = 7e-10
 Identities = 85/101 (84%)
 Strand = Plus / Minus

                                                                       
Query: 306 aggctgatttcgctggggtcggtggcctgcatctcgatctggatgccgtccagggtcctc 365
           ||||| || |||||||||||||||||||| ||||||  |||||||||||||||   ||||
Sbjct: 474 aggctcatctcgctggggtcggtggcctggatctcgcactggatgccgtccagctccctc 415

                                                    
Query: 366 ttgaacttctcgttggtgcttgcgtacgtcatcttgctcct 406
            ||||| | || |||| ||| ||||||  ||||||||||||
Sbjct: 414 ctgaacctgtccttggagctggcgtacagcatcttgctcct 374



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>dbj|AK069329.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023018P16, full
           insert sequence
          Length = 778

 Score = 73.8 bits (37), Expect = 7e-10
 Identities = 124/153 (81%)
 Strand = Plus / Minus

                                                                       
Query: 302 gtccaggctgatttcgctggggtcggtggcctgcatctcgatctggatgccgtccagggt 361
           ||||| ||| || |||||||| ||||| ||||||| ||| | |||||| ||||||||   
Sbjct: 482 gtccatgctcatctcgctgggatcggtcgcctgcagctccacctggatcccgtccagctc 423

                                                                       
Query: 362 cctcttgaacttctcgttggtgcttgcgtacgtcatcttgctcctcacctttgcggtgtc 421
           ||||||||||   || |||| ||| ||||||  |||||||||||||||||| |  |||||
Sbjct: 422 cctcttgaaccggtccttggagctcgcgtacagcatcttgctcctcaccttcgacgtgtc 363

                                            
Query: 422 tggggaccagaagatatagaagatcctgctctt 454
            || |||||| ||||  |||||||| |||||||
Sbjct: 362 cggcgaccaggagatgaagaagatcttgctctt 330



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>gb|AY112267.1| Zea mays CL5157_2 mRNA sequence
          Length = 779

 Score = 73.8 bits (37), Expect = 7e-10
 Identities = 124/153 (81%)
 Strand = Plus / Plus

                                                                       
Query: 302 gtccaggctgatttcgctggggtcggtggcctgcatctcgatctggatgccgtccagggt 361
           ||||| ||| || |||||||||||||||||||||| ||| | ||||||||| |||||   
Sbjct: 421 gtccatgctcatctcgctggggtcggtggcctgcagctccagctggatgccctccagctc 480

                                                                       
Query: 362 cctcttgaacttctcgttggtgcttgcgtacgtcatcttgctcctcacctttgcggtgtc 421
           ||||||||||   || |||| ||| |||||   |||||||||||| ||| | | ||||||
Sbjct: 481 cctcttgaaccggtccttggagctcgcgtaaagcatcttgctcctgaccctcgaggtgtc 540

                                            
Query: 422 tggggaccagaagatatagaagatcctgctctt 454
            ||||||||| ||||  | |||||| |||||||
Sbjct: 541 cggggaccaggagatgaacaagatcttgctctt 573



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>gb|AY104025.1| Zea mays PCO095832 mRNA sequence
          Length = 894

 Score = 73.8 bits (37), Expect = 7e-10
 Identities = 85/101 (84%)
 Strand = Plus / Minus

                                                                       
Query: 306 aggctgatttcgctggggtcggtggcctgcatctcgatctggatgccgtccagggtcctc 365
           ||||| || |||||||||||||||||||| ||||||  |||||||||||||||   ||||
Sbjct: 460 aggctcatctcgctggggtcggtggcctggatctcgcactggatgccgtccagctccctc 401

                                                    
Query: 366 ttgaacttctcgttggtgcttgcgtacgtcatcttgctcct 406
            ||||| | || |||| ||| ||||||  ||||||||||||
Sbjct: 400 ctgaacctgtccttggagctggcgtacagcatcttgctcct 360



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>emb|X97726.1|ZMABP3 Z.mays ZmABP3 mRNA for actin depolymerizing factor
          Length = 801

 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 78/92 (84%)
 Strand = Plus / Minus

                                                                       
Query: 363 ctcttgaacttctcgttggtgcttgcgtacgtcatcttgctcctcacctttgcggtgtct 422
           |||||||| |||| ||| | |||||||||   |||||||||| ||||||| |||| |  |
Sbjct: 479 ctcttgaatttctggtttgagcttgcgtaaagcatcttgctcttcaccttggcggaggat 420

                                           
Query: 423 ggggaccagaagatatagaagatcctgctctt 454
           |||||||| | |||||||||||||||||||||
Sbjct: 419 ggggaccataggatatagaagatcctgctctt 388



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>emb|X97725.1|ZMABP2 Z.mays ZmABP2 mRNA for actin depolymerizing factor
          Length = 546

 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 84/100 (84%)
 Strand = Plus / Minus

                                                                       
Query: 306 aggctgatttcgctggggtcggtggcctgcatctcgatctggatgccgtccagggtcctc 365
           ||||| || |||||||||||||||||||| ||||||  |||||||||||||||   ||||
Sbjct: 411 aggctcatctcgctggggtcggtggcctggatctcgcactggatgccgtccagctccctc 352

                                                   
Query: 366 ttgaacttctcgttggtgcttgcgtacgtcatcttgctcc 405
            ||||| | || |||| ||| ||||||  |||||||||||
Sbjct: 351 ctgaacctgtccttggagctggcgtacagcatcttgctcc 312



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>gb|AY109068.1| Zea mays PCO068743 mRNA sequence
          Length = 731

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 58/66 (87%)
 Strand = Plus / Minus

                                                                       
Query: 596 cctgtaggttatgaagcggtgcatcctcttggacttgagctccacgaacctcagcttgca 655
           ||||||| | |||||||||||| ||||||||| ||||||||||| |||||   |||||||
Sbjct: 226 cctgtagatgatgaagcggtgcgtcctcttggccttgagctccaggaaccggcgcttgca 167

                 
Query: 656 gtcgtc 661
           ||||||
Sbjct: 166 gtcgtc 161



 Score = 46.1 bits (23), Expect = 0.16
 Identities = 71/87 (81%)
 Strand = Plus / Minus

                                                                       
Query: 323 gtcggtggcctgcatctcgatctggatgccgtccagggtcctcttgaacttctcgttggt 382
           |||||||||||| |  || | ||| |||||||||||   || ||||||| |||| |||| 
Sbjct: 502 gtcggtggcctggagatccacctgaatgccgtccagctcccgcttgaacctctccttgga 443

                                      
Query: 383 gcttgcgtacgtcatcttgctcctcac 409
           ||| |||||  ||||||||||||||||
Sbjct: 442 gctggcgtagatcatcttgctcctcac 416



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>gb|BT016543.1| Zea mays clone Contig376 mRNA sequence
          Length = 881

 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 53/60 (88%)
 Strand = Plus / Minus

                                                                       
Query: 395 catcttgctcctcacctttgcggtgtctggggaccagaagatatagaagatcctgctctt 454
           |||||||||| ||||||| |||| |  ||||||||| | |||||||||||||||||||||
Sbjct: 473 catcttgctcttcaccttggcggaggatggggaccataggatatagaagatcctgctctt 414



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>gb|BT018082.1| Zea mays clone EL01N0552A09.c mRNA sequence
          Length = 837

 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 53/60 (88%)
 Strand = Plus / Minus

                                                                       
Query: 395 catcttgctcctcacctttgcggtgtctggggaccagaagatatagaagatcctgctctt 454
           |||||||||| ||||||| |||| |  ||||||||| | |||||||||||||||||||||
Sbjct: 446 catcttgctcttcaccttggcggaggatggggaccataggatatagaagatcctgctctt 387



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>gb|AY103749.1| Zea mays PCO115125 mRNA sequence
          Length = 965

 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 53/60 (88%)
 Strand = Plus / Minus

                                                                       
Query: 395 catcttgctcctcacctttgcggtgtctggggaccagaagatatagaagatcctgctctt 454
           |||||||||| ||||||| |||| |  ||||||||| | |||||||||||||||||||||
Sbjct: 496 catcttgctcttcaccttggcggaggatggggaccataggatatagaagatcctgctctt 437



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>emb|AL606647.3|OSJN00096 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0012E24,
             complete sequence
          Length = 127506

 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 91/111 (81%)
 Strand = Plus / Plus

                                                                         
Query: 302   gtccaggctgatttcgctggggtcggtggcctgcatctcgatctggatgccgtccagggt 361
             ||||| ||| || |||||||| ||||| ||||||| ||| | |||||| ||||||||   
Sbjct: 61399 gtccatgctcatctcgctgggatcggtcgcctgcagctccacctggatcccgtccagctc 61458

                                                                
Query: 362   cctcttgaacttctcgttggtgcttgcgtacgtcatcttgctcctcacctt 412
             ||||||||||   || |||| ||| ||||||  ||||||||||||||||||
Sbjct: 61459 cctcttgaaccggtccttggagctcgcgtacagcatcttgctcctcacctt 61509



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 91/111 (81%)
 Strand = Plus / Plus

                                                                            
Query: 302      gtccaggctgatttcgctggggtcggtggcctgcatctcgatctggatgccgtccagggt 361
                ||||| ||| || |||||||| ||||| ||||||| ||| | |||||| ||||||||   
Sbjct: 27792729 gtccatgctcatctcgctgggatcggtcgcctgcagctccacctggatcccgtccagctc 27792788

                                                                   
Query: 362      cctcttgaacttctcgttggtgcttgcgtacgtcatcttgctcctcacctt 412
                ||||||||||   || |||| ||| ||||||  ||||||||||||||||||
Sbjct: 27792789 cctcttgaaccggtccttggagctcgcgtacagcatcttgctcctcacctt 27792839



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>ref|XM_478113.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 884

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 83/101 (82%)
 Strand = Plus / Minus

                                                                       
Query: 306 aggctgatttcgctggggtcggtggcctgcatctcgatctggatgccgtccagggtcctc 365
           ||||| || ||||||||||| |||||||| ||||||  |||||| ||||||||   ||||
Sbjct: 463 aggctcatctcgctggggtctgtggcctgaatctcgcactggattccgtccagctccctc 404

                                                    
Query: 366 ttgaacttctcgttggtgcttgcgtacgtcatcttgctcct 406
            ||||| | || |||| ||| ||||||  ||||||||||||
Sbjct: 403 ctgaacctgtccttggagctcgcgtacagcatcttgctcct 363



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 83/101 (82%)
 Strand = Plus / Minus

                                                                            
Query: 306      aggctgatttcgctggggtcggtggcctgcatctcgatctggatgccgtccagggtcctc 365
                ||||| || ||||||||||| |||||||| ||||||  |||||| ||||||||   ||||
Sbjct: 17688290 aggctcatctcgctggggtctgtggcctgaatctcgcactggattccgtccagctccctc 17688231

                                                         
Query: 366      ttgaacttctcgttggtgcttgcgtacgtcatcttgctcct 406
                 ||||| | || |||| ||| ||||||  ||||||||||||
Sbjct: 17688230 ctgaacctgtccttggagctcgcgtacagcatcttgctcct 17688190



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>dbj|AP005465.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1136_F08
          Length = 134988

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 83/101 (82%)
 Strand = Plus / Minus

                                                                         
Query: 306   aggctgatttcgctggggtcggtggcctgcatctcgatctggatgccgtccagggtcctc 365
             ||||| || ||||||||||| |||||||| ||||||  |||||| ||||||||   ||||
Sbjct: 92323 aggctcatctcgctggggtctgtggcctgaatctcgcactggattccgtccagctccctc 92264

                                                      
Query: 366   ttgaacttctcgttggtgcttgcgtacgtcatcttgctcct 406
              ||||| | || |||| ||| ||||||  ||||||||||||
Sbjct: 92263 ctgaacctgtccttggagctcgcgtacagcatcttgctcct 92223



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>dbj|AK072662.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023134C12, full
           insert sequence
          Length = 884

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 83/101 (82%)
 Strand = Plus / Minus

                                                                       
Query: 306 aggctgatttcgctggggtcggtggcctgcatctcgatctggatgccgtccagggtcctc 365
           ||||| || ||||||||||| |||||||| ||||||  |||||| ||||||||   ||||
Sbjct: 463 aggctcatctcgctggggtctgtggcctgaatctcgcactggattccgtccagctccctc 404

                                                    
Query: 366 ttgaacttctcgttggtgcttgcgtacgtcatcttgctcct 406
            ||||| | || |||| ||| ||||||  ||||||||||||
Sbjct: 403 ctgaacctgtccttggagctcgcgtacagcatcttgctcct 363



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 52.0 bits (26), Expect = 0.003
 Identities = 74/90 (82%)
 Strand = Plus / Plus

                                                                            
Query: 321      gggtcggtggcctgcatctcgatctggatgccgtccagggtcctcttgaacttctcgttg 380
                ||||| |||||||||| ||| | |||||||||||||||   ||||||||||   || |||
Sbjct: 26938807 gggtcagtggcctgcagctccacctggatgccgtccagctccctcttgaaccgatccttg 26938866

                                              
Query: 381      gtgcttgcgtacgtcatcttgctcctcacc 410
                | ||| || |||  ||||||||||||||||
Sbjct: 26938867 gagctagcatacagcatcttgctcctcacc 26938896



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>dbj|AP004037.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1001_D02
          Length = 129081

 Score = 52.0 bits (26), Expect = 0.003
 Identities = 74/90 (82%)
 Strand = Plus / Plus

                                                                          
Query: 321    gggtcggtggcctgcatctcgatctggatgccgtccagggtcctcttgaacttctcgttg 380
              ||||| |||||||||| ||| | |||||||||||||||   ||||||||||   || |||
Sbjct: 117350 gggtcagtggcctgcagctccacctggatgccgtccagctccctcttgaaccgatccttg 117409

                                            
Query: 381    gtgcttgcgtacgtcatcttgctcctcacc 410
              | ||| || |||  ||||||||||||||||
Sbjct: 117410 gagctagcatacagcatcttgctcctcacc 117439



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>dbj|AK069605.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023024H08, full
           insert sequence
          Length = 914

 Score = 52.0 bits (26), Expect = 0.003
 Identities = 74/90 (82%)
 Strand = Plus / Minus

                                                                       
Query: 321 gggtcggtggcctgcatctcgatctggatgccgtccagggtcctcttgaacttctcgttg 380
           ||||| |||||||||| ||| | |||||||||||||||   ||||||||||   || |||
Sbjct: 506 gggtcagtggcctgcagctccacctggatgccgtccagctccctcttgaaccgatccttg 447

                                         
Query: 381 gtgcttgcgtacgtcatcttgctcctcacc 410
           | ||| || |||  ||||||||||||||||
Sbjct: 446 gagctagcatacagcatcttgctcctcacc 417



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>gb|U58278.1|TAU58278 Triticum aestivum actin-binding protein WCOR719 (Wcor719) mRNA,
           complete cds
          Length = 648

 Score = 48.1 bits (24), Expect = 0.042
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                       
Query: 315 tcgctggggtcggtggcctgcatctcgatctggatgccgtccag 358
           ||||||| ||||||||||||||  |||||||| | |||||||||
Sbjct: 470 tcgctggcgtcggtggcctgcacgtcgatctgcacgccgtccag 427



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>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome
          Length = 6093698

 Score = 44.1 bits (22), Expect = 0.65
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 302     gtccaggctgatttcgctggggtcgg 327
               |||| |||||||||||||||||||||
Sbjct: 4866116 gtcccggctgatttcgctggggtcgg 4866091



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>gb|AC135102.16| Medicago truncatula clone mth2-8m3, complete sequence
          Length = 144042

 Score = 44.1 bits (22), Expect = 0.65
 Identities = 46/54 (85%)
 Strand = Plus / Minus

                                                                   
Query: 362   cctcttgaacttctcgttggtgcttgcgtacgtcatcttgctcctcacctttgc 415
             |||||||||| | || ||||||||||| ||  |||||||||| |||||| ||||
Sbjct: 67112 cctcttgaacctttctttggtgcttgcataaatcatcttgcttctcacccttgc 67059



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>gb|AC141106.9| Medicago truncatula clone mth2-33e18, complete sequence
          Length = 105951

 Score = 44.1 bits (22), Expect = 0.65
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                   
Query: 629   cttgagctccacgaacctcagcttgcagtcgtcatgga 666
             |||||||||||  ||||||| ||||||||| |||||||
Sbjct: 24502 cttgagctccataaacctcaacttgcagtcatcatgga 24465



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>gb|AC157758.4| Medicago truncatula clone mth2-62b13, complete sequence
          Length = 106286

 Score = 44.1 bits (22), Expect = 0.65
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                   
Query: 629   cttgagctccacgaacctcagcttgcagtcgtcatgga 666
             |||||||||||  ||||||| ||||||||| |||||||
Sbjct: 92670 cttgagctccataaacctcaacttgcagtcatcatgga 92633



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>dbj|AP004908.1| Lotus japonicus genomic DNA, chromosome 6, clone:LjT12N11, TM0066,
             complete sequence
          Length = 79585

 Score = 44.1 bits (22), Expect = 0.65
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                   
Query: 629   cttgagctccacgaacctcagcttgcagtcgtcatgga 666
             |||||||||||  ||||| ||||||||||| |||||||
Sbjct: 29660 cttgagctccataaaccttagcttgcagtcatcatgga 29697



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>gb|AC115883.13| Mus musculus chromosome 3, clone RP24-376N4, complete sequence
          Length = 180645

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 356    cagggtcctcttgaacttctc 376
              |||||||||||||||||||||
Sbjct: 138047 cagggtcctcttgaacttctc 138067



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>ref|XM_811053.1| Trypanosoma cruzi strain CL Brener hypothetical protein
           (Tc00.1047053510885.10) partial mRNA
          Length = 2424

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 578 ctccttctggttctccagcct 598
           |||||||||||||||||||||
Sbjct: 8   ctccttctggttctccagcct 28


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,037,576
Number of Sequences: 3902068
Number of extensions: 6037576
Number of successful extensions: 122628
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 122274
Number of HSP's gapped (non-prelim): 343
length of query: 740
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 717
effective length of database: 17,143,297,704
effective search space: 12291744453768
effective search space used: 12291744453768
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)
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