>CHMU_ARATH (P42738) Chorismate mutase, chloroplast precursor (EC 5.4.99.5)|
           (CM-1)
          Length = 334

 Score =  141 bits (356), Expect = 2e-33
 Identities = 77/119 (64%), Positives = 85/119 (71%), Gaps = 8/119 (6%)
 Frame = -2

Query: 678 CLQALSKRIHYGKFVAEAKFQESPEAYTPAIKAQDGDQLMQLLTYETVERAIEHRVETKA 499
           CLQ LSKRIHYGKFVAEAKFQ SPEAY  AIKAQD D LM +LT+ TVE AI+ RVE K 
Sbjct: 216 CLQCLSKRIHYGKFVAEAKFQASPEAYESAIKAQDKDALMDMLTFPTVEDAIKKRVEMKT 275

Query: 498 KIFGQEVNIGAEAK--------GMPVYKIRPSLVAGLYSNRIMPLTKDVQVAYLLRRLD 346
           + +GQEV +G E K           VYKI P LV  LY + IMPLTK+VQV YLLRRLD
Sbjct: 276 RTYGQEVKVGMEEKEEEEEEGNESHVYKISPILVGDLYGDWIMPLTKEVQVEYLLRRLD 334

>CHMU_YEAST (P32178) Chorismate mutase (EC 5.4.99.5) (CM)|
          Length = 256

 Score = 90.9 bits (224), Expect = 3e-18
 Identities = 48/112 (42%), Positives = 72/112 (64%), Gaps = 1/112 (0%)
 Frame = -2

Query: 678 CLQALSKRIHYGKFVAEAKFQESPEAYTPAIKAQDGDQLMQLLTYETVERAIEHRVETKA 499
           CLQ+LS+RIH+GKFVAEAKFQ     YT  IK++D + +M+ +T   VE  I  R+  KA
Sbjct: 150 CLQSLSRRIHFGKFVAEAKFQSDIPLYTKLIKSKDVEGIMKNITNSAVEEKILERLTKKA 209

Query: 498 KIFGQE-VNIGAEAKGMPVYKIRPSLVAGLYSNRIMPLTKDVQVAYLLRRLD 346
           +++G +  N   E +  P Y ++      +Y   ++P+TK+V+V YLLRRL+
Sbjct: 210 EVYGVDPTNESGERRITPEYLVK------IYKEIVIPITKEVEVEYLLRRLE 255

>CHMU_SCHPO (O13739) Probable chorismate mutase (EC 5.4.99.5) (CM)|
          Length = 251

 Score = 76.6 bits (187), Expect = 7e-14
 Identities = 44/110 (40%), Positives = 63/110 (57%)
 Frame = -2

Query: 678 CLQALSKRIHYGKFVAEAKFQESPEAYTPAIKAQDGDQLMQLLTYETVERAIEHRVETKA 499
           CLQ+LS+RIHYGKFVAEAK+  +PE Y   I A+D   +   +     E  +  R+  KA
Sbjct: 145 CLQSLSRRIHYGKFVAEAKYLANPEKYKKLILARDIKGIENEIVDAAQEERVLKRLHYKA 204

Query: 498 KIFGQEVNIGAEAKGMPVYKIRPSLVAGLYSNRIMPLTKDVQVAYLLRRL 349
             +G++    A     P  +I    VA +Y + ++P+TK V+V YLL RL
Sbjct: 205 LNYGRD----AADPTKPSDRINADCVASIYKDYVIPMTKKVEVDYLLARL 250

>RPC1_YEAST (P04051) DNA-directed RNA polymerase III largest subunit (EC|
           2.7.7.6) (C160)
          Length = 1460

 Score = 31.2 bits (69), Expect = 3.2
 Identities = 28/99 (28%), Positives = 38/99 (38%)
 Frame = -2

Query: 705 DPVLFVTRPCLQALSKRIHYGKFVAEAKFQESPEAYTPAIKAQDGDQLMQLLTYETVERA 526
           D VLF  +P L  LS   HY K      F+ +    TP     DGD+ M L   +T E  
Sbjct: 470 DVVLFNRQPSLHRLSILSHYAKIRPWRTFRLNECVCTPYNADFDGDE-MNLHVPQTEEAR 528

Query: 525 IEHRVETKAKIFGQEVNIGAEAKGMPVYKIRPSLVAGLY 409
            E        + G + N+     G P+       + G Y
Sbjct: 529 AE-----AINLMGVKNNLLTPKSGEPIIAATQDFITGSY 562

>TILS_BLOFL (Q7VRC9) tRNA(Ile)-lysidine synthase (EC 6.3.4.-)|
           (tRNA(Ile)-lysidine synthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase)
          Length = 531

 Score = 31.2 bits (69), Expect = 3.2
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = -3

Query: 209 VYCFIYIVFCIVRARRAIMRWSGGMRSI*LLLVFAKL 99
           +Y +  ++ CIV+ R  ++ +SGGM S  LL +  KL
Sbjct: 11  LYLYHQVIRCIVKYRNLLLAYSGGMDSTVLLDILTKL 47

>SODE_RABIT (P41975) Extracellular superoxide dismutase [Cu-Zn] precursor (EC|
           1.15.1.1) (EC-SOD)
          Length = 244

 Score = 30.4 bits (67), Expect = 5.5
 Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 6/74 (8%)
 Frame = -1

Query: 580 SGR*STNAAPHLRDGRACHRTSGGNQG*DIWTGGEHRS*SQGHA------CVQDQAQPGR 419
           SG  ++ A PH   GRA    +G +   D+  GG   S   G+A      CV   + P  
Sbjct: 165 SGLAASLAGPHSIVGRAVVVHAGED---DLGRGGNAASVENGNAGPRLACCVVGASGPAP 221

Query: 418 WTVQQQDHAANQGR 377
           W  Q Q+HA  + R
Sbjct: 222 WARQAQEHAERKKR 235

>SECD_HELPY (O26074) Protein-export membrane protein secD|
          Length = 503

 Score = 30.4 bits (67), Expect = 5.5
 Identities = 15/65 (23%), Positives = 35/65 (53%)
 Frame = +2

Query: 275 RLYSLMQENRTKEQALHCTFVSAQSSLLSKYATWTSLVSGMILLLYSPATRLGLILYTGM 454
           R+  +++EN    +A+H  +++A  ++    +  TSL++ ++L  Y      G  L TG+
Sbjct: 406 RIREVLRENEGIAKAIHLGYINASRAIFD--SNITSLIASVLLYAYGTGAIKGFALTTGI 463

Query: 455 PLASA 469
            + ++
Sbjct: 464 GILAS 468

>IDUA_MOUSE (P48441) Alpha-L-iduronidase precursor (EC 3.2.1.76)|
          Length = 634

 Score = 30.0 bits (66), Expect = 7.2
 Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
 Frame = +1

Query: 259 RGFPAPFIFSDARKSDEGAGIALHICERSVQPP*QVCYLDVLG*RHDP-VAVQSSDQAGP 435
           R FPA    +  RK    + + +H+C R ++PP QV  L  L   H   + V S ++ G 
Sbjct: 506 RPFPARGRLTLHRKLPVPSLLLVHVCTRPLKPPGQVSRLRALPLTHGQLILVWSDERVGS 565

Query: 436 DLVHRHALGFS 468
             +  + + FS
Sbjct: 566 KCLWTYEIQFS 576

>RPC1_DEBHA (Q6BI69) DNA-directed RNA polymerase III largest subunit (EC|
           2.7.7.6)
          Length = 1457

 Score = 30.0 bits (66), Expect = 7.2
 Identities = 27/99 (27%), Positives = 38/99 (38%)
 Frame = -2

Query: 705 DPVLFVTRPCLQALSKRIHYGKFVAEAKFQESPEAYTPAIKAQDGDQLMQLLTYETVERA 526
           D VLF  +P L  LS   HY K      F+ +    TP     DGD+ M +   +T E  
Sbjct: 467 DIVLFNRQPSLHRLSILSHYAKIRPWRTFRLNECVCTPYNADFDGDE-MNIHVPQTEEAR 525

Query: 525 IEHRVETKAKIFGQEVNIGAEAKGMPVYKIRPSLVAGLY 409
            E        + G + N+     G P+       + G Y
Sbjct: 526 AE-----AINLMGVKNNLLTPKSGEPIIAATQDFITGSY 559

>LONH2_ARATH (P93655) Lon protease homolog 2, mitochondrial precursor (EC|
           3.4.21.-)
          Length = 940

 Score = 29.6 bits (65), Expect = 9.4
 Identities = 22/88 (25%), Positives = 42/88 (47%)
 Frame = -2

Query: 543 ETVERAIEHRVETKAKIFGQEVNIGAEAKGMPVYKIRPSLVAGLYSNRIMPLTKDVQVAY 364
           ET+ +AIE ++  + + +     + A  K + V     S ++  +  RI P  K+   A+
Sbjct: 316 ETIAKAIEEKISGEQRRYLLNEQLKAIKKELGVETDDKSALSAKFKERIEP-NKEKIPAH 374

Query: 363 LLRRLD*ALTNVQCNACSFVRFSCIREY 280
           +L+ ++  LT +Q    S   F+  R Y
Sbjct: 375 VLQVIEEELTKLQLLEASSSEFNVTRNY 402

>YPX2_CAEEL (Q20256) Hypothetical protein F40H6.2|
          Length = 997

 Score = 29.6 bits (65), Expect = 9.4
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = +2

Query: 419 ATRLGLILYTGMPLASAPMFTSCPNILALVST 514
           ATRLG I + G  + +A +F S P+I+AL  T
Sbjct: 841 ATRLGFIQHDGAGVTNACVFLSDPSIVALCGT 872


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 104,230,565
Number of Sequences: 219361
Number of extensions: 2257242
Number of successful extensions: 6123
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 5929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6117
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7082949625
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)