ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags10d23
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_470960.1| Oryza sativa (japonica cultivar-group), predic... 280 5e-72
2dbj|AK073274.1| Oryza sativa (japonica cultivar-group) cDNA clon... 280 5e-72
3dbj|AK066103.1| Oryza sativa (japonica cultivar-group) cDNA clon... 280 5e-72
4dbj|AK061755.1| Oryza sativa (japonica cultivar-group) cDNA clon... 280 5e-72
5gb|AY596542.1| Saccharum officinarum clone SCCCLB1002C01, comple... 228 2e-56
6gb|BT017350.1| Zea mays clone EL01N0323G09.c mRNA sequence 202 9e-49
7gb|AY104243.1| Zea mays PCO073150 mRNA sequence 202 9e-49
8emb|AL662935.3|OSJN00146 Oryza sativa genomic DNA, chromosome 4,... 167 5e-38
9dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 167 5e-38
10gb|AC163198.7| Mus musculus 6 BAC RP23-174M4 (Roswell Park Cance... 44 0.49
11emb|BX004867.7| Zebrafish DNA sequence from clone CH211-159K2 in... 44 0.49
12gb|AC126692.4| Mus musculus BAC clone RP23-246J18 from 6, comple... 44 0.49
13emb|AL354938.12| Human DNA sequence from clone RP11-86L19 on chr... 42 1.9
14gb|AC009646.12| Homo sapiens chromosome 8, clone RP11-162D9, com... 42 1.9
15gb|AC013477.7| Homo sapiens BAC clone RP11-559F19 from 4, comple... 42 1.9
16gb|AC016113.9| Homo sapiens, clone RP11-26P22, complete sequence 42 1.9
17gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 7.6
18gb|AC125460.4| Mus musculus BAC clone RP24-448D10 from chromosom... 40 7.6
19gb|AC126454.3| Mus musculus BAC clone RP23-256L12 from 19, compl... 40 7.6
20gb|AC092208.6| Homo sapiens BAC clone RP11-476O21 from 7, comple... 40 7.6
21gb|AC074390.6| Homo sapiens BAC clone RP11-515K14 from 7, comple... 40 7.6
22gb|AC006459.3| Homo sapiens BAC clone GS1-281N8 from 7, complete... 40 7.6
23gb|AC100736.5| Mus musculus chromosome 15, clone RP24-336O6, com... 40 7.6
24gb|AC141113.5| Medicago truncatula clone mth2-7h7, complete sequ... 40 7.6
25emb|AL513322.18| Human DNA sequence from clone RP11-332M15 on ch... 40 7.6
26emb|AL135908.13| Human DNA sequence from clone RP1-28O17 on chro... 40 7.6
27emb|AL132982.12|HSKB152G3 Human DNA sequence from clone KB-152G3... 40 7.6
28gb|AC164524.5| Mus musculus BAC RP23-438F8 (Roswell Park Cancer... 40 7.6
29dbj|AP003380.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.6
30gb|AC078784.24| Homo sapiens 3 BAC RP11-63L4 (Roswell Park Cance... 40 7.6
31gb|AC090857.8| Homo sapiens chromosome 11, clone RP11-670N15, co... 40 7.6
32gb|AC012153.10| Homo sapiens 11q BAC RP5-1045O21 (Roswell Park C... 40 7.6
33dbj|AK138969.1| Mus musculus adult male aorta and vein cDNA, RIK... 40 7.6
34gb|AC171007.3| Gallus gallus BAC clone CH261-166I11 from chromos... 40 7.6
35gb|AC007532.8| Drosophila melanogaster, chromosome 3R, region 82... 40 7.6
36gb|AC044790.4|AC044790 Homo sapiens chromosome 11 clone RP11-141... 40 7.6
37gb|AC037492.5|AC037492 Homo sapiens chromosome 8, clone RP11-38H... 40 7.6
38dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.6
39dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.6
40gb|AC079315.30| Homo sapiens 12 BAC RP11-380L11 (Roswell Park Ca... 40 7.6
41gb|AC155657.8| Mus musculus 6 BAC RP24-113L15 (Roswell Park Canc... 40 7.6
42gb|AC145899.4| Pan troglodytes BAC clone RP43-19O5 from chromoso... 40 7.6
43gb|AC016945.22| Homo sapiens 3 BAC RP11-31L6 (Roswell Park Cance... 40 7.6
44gb|AC137076.1| Genomic sequence for Oryza sativa, Nipponbare str... 40 7.6
45dbj|AP006531.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.6
46gb|AC079246.2| Homo sapiens BAC clone CTD-2002G20 from 2, comple... 40 7.6
47emb|BX569787.4| Zebrafish DNA sequence from clone CH211-208H1 in... 40 7.6
48emb|AJ292610.1|UEU292610 uncultured eubacterium WD2107 partial 1... 40 7.6
49gb|AE003603.4| Drosophila melanogaster chromosome 3R, section 5 ... 40 7.6
50dbj|AP001092.5| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 7.6
51dbj|AP006288.2| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 7.6
52emb|AL928539.4| Mouse DNA sequence from clone RP23-152D24 on chr... 40 7.6 
>ref|XM_470960.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 954

 Score =  280 bits (141), Expect = 5e-72
 Identities = 252/289 (87%)
 Strand = Plus / Minus

                                                                       
Query: 272 gagctggggcttcggcgtcagccgcatgatccgcggccatcctttcctcgagaaccctct 331
           ||||||||||||| | ||| || ||||| || || |||| ||||||||| |||||||| |
Sbjct: 928 gagctggggcttccgtgtctgctgcatggtctgcagccaacctttcctcaagaacccttt 869

                                                                       
Query: 332 cgccacgctcccttcttctcgatgccttggtaggatcggtaactgggagggcaatttccg 391
           |||||||||||||||||||||||||||| | |||||| |  ||||||||||| | ||| |
Sbjct: 868 cgccacgctcccttcttctcgatgcctttgcaggatctgagactgggagggccagttcag 809

                                                                       
Query: 392 aagtcttggacctcacacacaacatgcggtcgaacatgttagcaactgggtctgtgactg 451
           |||   | |||||  |||||| ||| || || || | ||||||||| |||||||||||||
Sbjct: 808 aaggtctagaccttgcacacagcatccgatcaaagaggttagcaacagggtctgtgactg 749

                                                                       
Query: 452 gccgcatggcatctgggaacaagctggggaaggagaagtcatcacttgggtcgcccttaa 511
           ||||||||||||| ||||||||||||||||||||||||||||||||||  || |||||||
Sbjct: 748 gccgcatggcatccgggaacaagctggggaaggagaagtcatcacttgaatcacccttaa 689

                                                            
Query: 512 gtcctgtcagtgggttcctctggaagtatctcaggtaaagccagctgac 560
           | ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 688 gccctgtcagtgggttcctctggaagtatctcaggtaaatccagctgac 640
to top
>dbj|AK073274.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033029B20, full
            insert sequence
          Length = 1504

 Score =  280 bits (141), Expect = 5e-72
 Identities = 252/289 (87%)
 Strand = Plus / Minus

                                                                        
Query: 272  gagctggggcttcggcgtcagccgcatgatccgcggccatcctttcctcgagaaccctct 331
            ||||||||||||| | ||| || ||||| || || |||| ||||||||| |||||||| |
Sbjct: 1202 gagctggggcttccgtgtctgctgcatggtctgcagccaacctttcctcaagaacccttt 1143

                                                                        
Query: 332  cgccacgctcccttcttctcgatgccttggtaggatcggtaactgggagggcaatttccg 391
            |||||||||||||||||||||||||||| | |||||| |  ||||||||||| | ||| |
Sbjct: 1142 cgccacgctcccttcttctcgatgcctttgcaggatctgagactgggagggccagttcag 1083

                                                                        
Query: 392  aagtcttggacctcacacacaacatgcggtcgaacatgttagcaactgggtctgtgactg 451
            |||   | |||||  |||||| ||| || || || | ||||||||| |||||||||||||
Sbjct: 1082 aaggtctagaccttgcacacagcatccgatcaaagaggttagcaacagggtctgtgactg 1023

                                                                        
Query: 452  gccgcatggcatctgggaacaagctggggaaggagaagtcatcacttgggtcgcccttaa 511
            ||||||||||||| ||||||||||||||||||||||||||||||||||  || |||||||
Sbjct: 1022 gccgcatggcatccgggaacaagctggggaaggagaagtcatcacttgaatcacccttaa 963

                                                             
Query: 512  gtcctgtcagtgggttcctctggaagtatctcaggtaaagccagctgac 560
            | ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 962  gccctgtcagtgggttcctctggaagtatctcaggtaaatccagctgac 914



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 53/63 (84%), Gaps = 3/63 (4%)
 Strand = Plus / Minus

                                                                        
Query: 27   ggggatgccaccctttttcttctttcctcactgtaatcaggaactacaacacaatttaac 86
            ||||||| || ||||||  ||||||  ||||||||||||   ||||||||| ||||||||
Sbjct: 1443 ggggatgtcatccttttctttcttttttcactgtaatca---actacaacagaatttaac 1387

               
Query: 87   caa 89
            |||
Sbjct: 1386 caa 1384
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>dbj|AK066103.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013051M22, full
            insert sequence
          Length = 1159

 Score =  280 bits (141), Expect = 5e-72
 Identities = 252/289 (87%)
 Strand = Plus / Minus

                                                                        
Query: 272  gagctggggcttcggcgtcagccgcatgatccgcggccatcctttcctcgagaaccctct 331
            ||||||||||||| | ||| || ||||| || || |||| ||||||||| |||||||| |
Sbjct: 1018 gagctggggcttccgtgtctgctgcatggtctgcagccaacctttcctcaagaacccttt 959

                                                                        
Query: 332  cgccacgctcccttcttctcgatgccttggtaggatcggtaactgggagggcaatttccg 391
            |||||||||||||||||||||||||||| | |||||| |  ||||||||||| | ||| |
Sbjct: 958  cgccacgctcccttcttctcgatgcctttgcaggatctgagactgggagggccagttcag 899

                                                                        
Query: 392  aagtcttggacctcacacacaacatgcggtcgaacatgttagcaactgggtctgtgactg 451
            |||   | |||||  |||||| ||| || || || | ||||||||| |||||||||||||
Sbjct: 898  aaggtctagaccttgcacacagcatccgatcaaagaggttagcaacagggtctgtgactg 839

                                                                        
Query: 452  gccgcatggcatctgggaacaagctggggaaggagaagtcatcacttgggtcgcccttaa 511
            ||||||||||||| ||||||||||||||||||||||||||||||||||  || |||||||
Sbjct: 838  gccgcatggcatccgggaacaagctggggaaggagaagtcatcacttgaatcacccttaa 779

                                                             
Query: 512  gtcctgtcagtgggttcctctggaagtatctcaggtaaagccagctgac 560
            | ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 778  gccctgtcagtgggttcctctggaagtatctcaggtaaatccagctgac 730
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>dbj|AK061755.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-A02, full
           insert sequence
          Length = 1250

 Score =  280 bits (141), Expect = 5e-72
 Identities = 252/289 (87%)
 Strand = Plus / Minus

                                                                       
Query: 272 gagctggggcttcggcgtcagccgcatgatccgcggccatcctttcctcgagaaccctct 331
           ||||||||||||| | ||| || ||||| || || |||| ||||||||| |||||||| |
Sbjct: 958 gagctggggcttccgtgtctgctgcatggtctgcagccaacctttcctcaagaacccttt 899

                                                                       
Query: 332 cgccacgctcccttcttctcgatgccttggtaggatcggtaactgggagggcaatttccg 391
           |||||||||||||||||||||||||||| | |||||| |  ||||||||||| | ||| |
Sbjct: 898 cgccacgctcccttcttctcgatgcctttgcaggatctgagactgggagggccagttcag 839

                                                                       
Query: 392 aagtcttggacctcacacacaacatgcggtcgaacatgttagcaactgggtctgtgactg 451
           |||   | |||||  |||||| ||| || || || | ||||||||| |||||||||||||
Sbjct: 838 aaggtctagaccttgcacacagcatccgatcaaagaggttagcaacagggtctgtgactg 779

                                                                       
Query: 452 gccgcatggcatctgggaacaagctggggaaggagaagtcatcacttgggtcgcccttaa 511
           ||||||||||||| ||||||||||||||||||||||||||||||||||  || |||||||
Sbjct: 778 gccgcatggcatccgggaacaagctggggaaggagaagtcatcacttgaatcacccttaa 719

                                                            
Query: 512 gtcctgtcagtgggttcctctggaagtatctcaggtaaagccagctgac 560
           | ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 718 gccctgtcagtgggttcctctggaagtatctcaggtaaatccagctgac 670



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 53/63 (84%), Gaps = 3/63 (4%)
 Strand = Plus / Minus

                                                                        
Query: 27   ggggatgccaccctttttcttctttcctcactgtaatcaggaactacaacacaatttaac 86
            ||||||| || ||||||  ||||||  ||||||||||||   ||||||||| ||||||||
Sbjct: 1199 ggggatgtcatccttttctttcttttttcactgtaatca---actacaacagaatttaac 1143

               
Query: 87   caa 89
            |||
Sbjct: 1142 caa 1140
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>gb|AY596542.1| Saccharum officinarum clone SCCCLB1002C01, complete sequence
          Length = 1581

 Score =  228 bits (115), Expect = 2e-56
 Identities = 217/251 (86%)
 Strand = Plus / Plus

                                                                       
Query: 307 gccatcctttcctcgagaaccctctcgccacgctcccttcttctcgatgccttggtagga 366
           |||| ||||||||| ||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 463 gccagcctttcctcaagaaccctctcgccacgctcccttcttcttgaagccttggtagga 522

                                                                       
Query: 367 tcggtaactgggagggcaatttccgaagtcttggacctcacacacaacatgcggtcgaac 426
           || | || |||||| || | |||||||| | | |||||  |||||||||| |  || |||
Sbjct: 523 tctgaaattgggagagccacttccgaaggccttgaccttgcacacaacatcctatcaaac 582

                                                                       
Query: 427 atgttagcaactgggtctgtgactggccgcatggcatctgggaacaagctggggaaggag 486
           | ||| || || |||||||| ||||| | ||||||| ||||||| || ||||||||||||
Sbjct: 583 aggttggccacagggtctgtaactggtctcatggcagctgggaataaactggggaaggag 642

                                                                       
Query: 487 aagtcatcacttgggtcgcccttaagtcctgtcagtgggttcctctggaagtatctcagg 546
           ||||||||||| || || ||||||||||| |||||||||||||| |||||||||||||||
Sbjct: 643 aagtcatcactgggatcacccttaagtccagtcagtgggttcctttggaagtatctcagg 702

                      
Query: 547 taaagccagct 557
           |||||||||||
Sbjct: 703 taaagccagct 713
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>gb|BT017350.1| Zea mays clone EL01N0323G09.c mRNA sequence
          Length = 1164

 Score =  202 bits (102), Expect = 9e-49
 Identities = 213/250 (85%)
 Strand = Plus / Plus

                                                                       
Query: 313 ctttcctcgagaaccctctcgccacgctcccttcttctcgatgccttggtaggatcggta 372
           |||||||| ||||||||||| ||||||||||||||||| || |||||||||||||| | |
Sbjct: 459 ctttcctcaagaaccctctcaccacgctcccttcttcttgaagccttggtaggatctgaa 518

                                                                       
Query: 373 actgggagggcaatttccgaagtcttggacctcacacacaacatgcggtcgaacatgtta 432
           | |||||| || | |||| ||| | |||||||  |||||| ||| |  || |||| ||| 
Sbjct: 519 attgggagagctacttccaaaggcctggaccttgcacacagcatcctatcaaacaggttg 578

                                                                       
Query: 433 gcaactgggtctgtgactggccgcatggcatctgggaacaagctggggaaggagaagtca 492
           || || |||||||| ||||| | ||||||| ||||||| || ||||||||||||||||||
Sbjct: 579 gccacagggtctgtaactggtctcatggcagctgggaataaactggggaaggagaagtca 638

                                                                       
Query: 493 tcacttgggtcgcccttaagtcctgtcagtgggttcctctggaagtatctcaggtaaagc 552
           ||||| || || ||||||||||| |||||||||||||| ||||||||||||| |||||||
Sbjct: 639 tcactgggatcacccttaagtccagtcagtgggttcctttggaagtatctcaagtaaagc 698

                     
Query: 553 cagctgacgt 562
           ||||| ||||
Sbjct: 699 cagctaacgt 708
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>gb|AY104243.1| Zea mays PCO073150 mRNA sequence
          Length = 1638

 Score =  202 bits (102), Expect = 9e-49
 Identities = 213/250 (85%)
 Strand = Plus / Minus

                                                                        
Query: 313  ctttcctcgagaaccctctcgccacgctcccttcttctcgatgccttggtaggatcggta 372
            |||||||| ||||||||||| ||||||||||||||||| || |||||||||||||| | |
Sbjct: 1153 ctttcctcaagaaccctctcaccacgctcccttcttcttgaagccttggtaggatctgaa 1094

                                                                        
Query: 373  actgggagggcaatttccgaagtcttggacctcacacacaacatgcggtcgaacatgtta 432
            | |||||| || | |||| |||   |||||||  |||||||||| |  || |||| ||| 
Sbjct: 1093 attgggagagctacttccaaaggtctggaccttgcacacaacatcctatcaaacaggttg 1034

                                                                        
Query: 433  gcaactgggtctgtgactggccgcatggcatctgggaacaagctggggaaggagaagtca 492
            || || |||||||| ||||| | ||||||| ||||||| || ||||||||||||||||||
Sbjct: 1033 gccacagggtctgtaactggtctcatggcagctgggaataaactggggaaggagaagtca 974

                                                                        
Query: 493  tcacttgggtcgcccttaagtcctgtcagtgggttcctctggaagtatctcaggtaaagc 552
            ||||| || || ||||||||||| |||||||||||||| |||||||| ||||||||||||
Sbjct: 973  tcactgggatcacccttaagtccagtcagtgggttcctttggaagtacctcaggtaaagc 914

                      
Query: 553  cagctgacgt 562
            ||||| ||||
Sbjct: 913  cagctaacgt 904
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>emb|AL662935.3|OSJN00146 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0094O15,
             complete sequence
          Length = 144778

 Score =  167 bits (84), Expect = 5e-38
 Identities = 102/108 (94%)
 Strand = Plus / Plus

                                                                         
Query: 453   ccgcatggcatctgggaacaagctggggaaggagaagtcatcacttgggtcgcccttaag 512
             |||||||||||| ||||||||||||||||||||||||||||||||||  || ||||||||
Sbjct: 14045 ccgcatggcatccgggaacaagctggggaaggagaagtcatcacttgaatcacccttaag 14104

                                                             
Query: 513   tcctgtcagtgggttcctctggaagtatctcaggtaaagccagctgac 560
              ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 14105 ccctgtcagtgggttcctctggaagtatctcaggtaaatccagctgac 14152



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 63/73 (86%)
 Strand = Plus / Plus

                                                                         
Query: 272   gagctggggcttcggcgtcagccgcatgatccgcggccatcctttcctcgagaaccctct 331
             ||||||||||||| | ||| || ||||| || || |||| ||||||||| |||||||| |
Sbjct: 13589 gagctggggcttccgtgtctgctgcatggtctgcagccaacctttcctcaagaacccttt 13648

                          
Query: 332   cgccacgctccct 344
             |||||||||||||
Sbjct: 13649 cgccacgctccct 13661



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 92/113 (81%)
 Strand = Plus / Plus

                                                                         
Query: 342   ccttcttctcgatgccttggtaggatcggtaactgggagggcaatttccgaagtcttgga 401
             |||||||||||||||||| | |||||| |  ||||||||||| | ||| ||||   | ||
Sbjct: 13840 ccttcttctcgatgcctttgcaggatctgagactgggagggccagttcagaaggtctaga 13899

                                                                  
Query: 402   cctcacacacaacatgcggtcgaacatgttagcaactgggtctgtgactggcc 454
             |||  |||||| ||| || || || | ||||||||| ||||||||||||||||
Sbjct: 13900 ccttgcacacagcatccgatcaaagaggttagcaacagggtctgtgactggcc 13952



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 53/63 (84%), Gaps = 3/63 (4%)
 Strand = Plus / Plus

                                                                         
Query: 27    ggggatgccaccctttttcttctttcctcactgtaatcaggaactacaacacaatttaac 86
             ||||||| || ||||||  ||||||  ||||||||||||   ||||||||| ||||||||
Sbjct: 13348 ggggatgtcatccttttctttcttttttcactgtaatca---actacaacagaatttaac 13404

                
Query: 87    caa 89
             |||
Sbjct: 13405 caa 13407
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4,
              complete sequence
          Length = 35498469

 Score =  167 bits (84), Expect = 5e-38
 Identities = 102/108 (94%)
 Strand = Plus / Plus

                                                                          
Query: 453    ccgcatggcatctgggaacaagctggggaaggagaagtcatcacttgggtcgcccttaag 512
              |||||||||||| ||||||||||||||||||||||||||||||||||  || ||||||||
Sbjct: 218225 ccgcatggcatccgggaacaagctggggaaggagaagtcatcacttgaatcacccttaag 218284

                                                              
Query: 513    tcctgtcagtgggttcctctggaagtatctcaggtaaagccagctgac 560
               ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 218285 ccctgtcagtgggttcctctggaagtatctcaggtaaatccagctgac 218332



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 63/73 (86%)
 Strand = Plus / Plus

                                                                          
Query: 272    gagctggggcttcggcgtcagccgcatgatccgcggccatcctttcctcgagaaccctct 331
              ||||||||||||| | ||| || ||||| || || |||| ||||||||| |||||||| |
Sbjct: 217769 gagctggggcttccgtgtctgctgcatggtctgcagccaacctttcctcaagaacccttt 217828

                           
Query: 332    cgccacgctccct 344
              |||||||||||||
Sbjct: 217829 cgccacgctccct 217841



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 92/113 (81%)
 Strand = Plus / Plus

                                                                          
Query: 342    ccttcttctcgatgccttggtaggatcggtaactgggagggcaatttccgaagtcttgga 401
              |||||||||||||||||| | |||||| |  ||||||||||| | ||| ||||   | ||
Sbjct: 218020 ccttcttctcgatgcctttgcaggatctgagactgggagggccagttcagaaggtctaga 218079

                                                                   
Query: 402    cctcacacacaacatgcggtcgaacatgttagcaactgggtctgtgactggcc 454
              |||  |||||| ||| || || || | ||||||||| ||||||||||||||||
Sbjct: 218080 ccttgcacacagcatccgatcaaagaggttagcaacagggtctgtgactggcc 218132



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 53/63 (84%), Gaps = 3/63 (4%)
 Strand = Plus / Plus

                                                                          
Query: 27     ggggatgccaccctttttcttctttcctcactgtaatcaggaactacaacacaatttaac 86
              ||||||| || ||||||  ||||||  ||||||||||||   ||||||||| ||||||||
Sbjct: 217528 ggggatgtcatccttttctttcttttttcactgtaatca---actacaacagaatttaac 217584

                 
Query: 87     caa 89
              |||
Sbjct: 217585 caa 217587
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>gb|AC163198.7| Mus musculus 6 BAC RP23-174M4 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 188300

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 38    cctttttcttctttcctcactg 59
             ||||||||||||||||||||||
Sbjct: 86710 cctttttcttctttcctcactg 86689
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>emb|BX004867.7| Zebrafish DNA sequence from clone CH211-159K2 in linkage group 14,
             complete sequence
          Length = 160087

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                           
Query: 102   aaacaaggaaacaaaaaagggcggtaaagt 131
             ||||||||||  ||||||||||||||||||
Sbjct: 58158 aaacaaggaataaaaaaagggcggtaaagt 58129
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>gb|AC126692.4| Mus musculus BAC clone RP23-246J18 from 6, complete sequence
          Length = 195236

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 38     cctttttcttctttcctcactg 59
              ||||||||||||||||||||||
Sbjct: 193250 cctttttcttctttcctcactg 193229
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>emb|AL354938.12| Human DNA sequence from clone RP11-86L19 on chromosome 9 Contains the
             3' end of the SMC2L1 gene for SMC2 structural maintenance
             of chromosomes 2-like 1 (yeast) (CAPE, CAP-E, hCAP-E), a
             novel pseudogene and a CpG island, complete sequence
          Length = 179738

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 99    gcaaaacaaggaaacaaaaaa 119
             |||||||||||||||||||||
Sbjct: 56930 gcaaaacaaggaaacaaaaaa 56910
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>gb|AC009646.12| Homo sapiens chromosome 8, clone RP11-162D9, complete sequence
          Length = 183519

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 99    gcaaaacaaggaaacaaaaaa 119
             |||||||||||||||||||||
Sbjct: 28966 gcaaaacaaggaaacaaaaaa 28946
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>gb|AC013477.7| Homo sapiens BAC clone RP11-559F19 from 4, complete sequence
          Length = 182092

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 99     gcaaaacaaggaaacaaaaaa 119
              |||||||||||||||||||||
Sbjct: 128962 gcaaaacaaggaaacaaaaaa 128982
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>gb|AC016113.9| Homo sapiens, clone RP11-26P22, complete sequence
          Length = 185419

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 99    gcaaaacaaggaaacaaaaaa 119
             |||||||||||||||||||||
Sbjct: 12525 gcaaaacaaggaaacaaaaaa 12545
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                            
Query: 466      gggaacaagctggggaaggagaagtcatcacttgggtcgccctt 509
                ||||| ||||| | ||| ||||| |||||||||||||| |||||
Sbjct: 13723326 gggaagaagcttgagaatgagaattcatcacttgggtccccctt 13723369
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>gb|AC125460.4| Mus musculus BAC clone RP24-448D10 from chromosome 15, complete sequence
          Length = 205859

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 100    caaaacaaggaaacaaaaaa 119
              ||||||||||||||||||||
Sbjct: 205829 caaaacaaggaaacaaaaaa 205848
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>gb|AC126454.3| Mus musculus BAC clone RP23-256L12 from 19, complete sequence
          Length = 188518

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 464   ctgggaacaagctggggaag 483
             ||||||||||||||||||||
Sbjct: 27340 ctgggaacaagctggggaag 27359
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>gb|AC092208.6| Homo sapiens BAC clone RP11-476O21 from 7, complete sequence
          Length = 135912

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 39    ctttttcttctttcctcact 58
             ||||||||||||||||||||
Sbjct: 24064 ctttttcttctttcctcact 24083
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>gb|AC074390.6| Homo sapiens BAC clone RP11-515K14 from 7, complete sequence
          Length = 111722

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 38     cctttttcttctttcctcac 57
              ||||||||||||||||||||
Sbjct: 101340 cctttttcttctttcctcac 101321
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>gb|AC006459.3| Homo sapiens BAC clone GS1-281N8 from 7, complete sequence
          Length = 186981

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 102    aaacaaggaaacaaaaaagg 121
              ||||||||||||||||||||
Sbjct: 159974 aaacaaggaaacaaaaaagg 159993
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>gb|AC100736.5| Mus musculus chromosome 15, clone RP24-336O6, complete sequence
          Length = 247275

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 100    caaaacaaggaaacaaaaaa 119
              ||||||||||||||||||||
Sbjct: 187011 caaaacaaggaaacaaaaaa 186992
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>gb|AC141113.5| Medicago truncatula clone mth2-7h7, complete sequence
          Length = 138094

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 36    accctttttcttctttcctc 55
             ||||||||||||||||||||
Sbjct: 47718 accctttttcttctttcctc 47737
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>emb|AL513322.18| Human DNA sequence from clone RP11-332M15 on chromosome 1 Contains
            the 5' end of the SIL gene for TAL1 (SCL) interrupting
            locus, the 5' end of the  gene for UMP-CMP kinase
            (UMP-CMPK) and a CpG island, complete sequence
          Length = 68049

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 40   tttttcttctttcctcactg 59
            ||||||||||||||||||||
Sbjct: 3517 tttttcttctttcctcactg 3498
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>emb|AL135908.13| Human DNA sequence from clone RP1-28O17 on chromosome 6 Contains a novel
              gene, complete sequence
          Length = 148503

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 99     gcaaaacaaggaaacaaaaa 118
              ||||||||||||||||||||
Sbjct: 109969 gcaaaacaaggaaacaaaaa 109950
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>emb|AL132982.12|HSKB152G3 Human DNA sequence from clone KB-152G3 on chromosome 6 Contains the 3'
             end of the PARK2 gene for Parkinson disease (autosomal
             recessive, juvenile) 2, parkin (PDJ, PRKN, AR-JP),
             complete sequence
          Length = 91798

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 39    ctttttcttctttcctcact 58
             ||||||||||||||||||||
Sbjct: 26533 ctttttcttctttcctcact 26514
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>gb|AC164524.5| Mus musculus  BAC RP23-438F8 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 180937

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 505    cccttaagtcctgtcagtgg 524
              ||||||||||||||||||||
Sbjct: 133359 cccttaagtcctgtcagtgg 133378
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>dbj|AP003380.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0497A05
          Length = 130919

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 93    atattcgcaaaacaaggaaacaaaaaag 120
             ||||| |||||||||| |||||||||||
Sbjct: 57244 atattggcaaaacaagtaaacaaaaaag 57217
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>gb|AC078784.24| Homo sapiens 3 BAC RP11-63L4 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 165413

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 38    cctttttcttctttcctcac 57
             ||||||||||||||||||||
Sbjct: 22628 cctttttcttctttcctcac 22609
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>gb|AC090857.8| Homo sapiens chromosome 11, clone RP11-670N15, complete sequence
          Length = 180120

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 99    gcaaaacaaggaaacaaaaa 118
             ||||||||||||||||||||
Sbjct: 54566 gcaaaacaaggaaacaaaaa 54547
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>gb|AC012153.10| Homo sapiens 11q BAC RP5-1045O21 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 120628

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 101   aaaacaaggaaacaaaaaag 120
             ||||||||||||||||||||
Sbjct: 21406 aaaacaaggaaacaaaaaag 21425
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>dbj|AK138969.1| Mus musculus adult male aorta and vein cDNA, RIKEN full-length
            enriched library, clone:A530037A09 product:contactin 1,
            full insert sequence
          Length = 4525

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 100  caaaacaaggaaacaaaaaa 119
            ||||||||||||||||||||
Sbjct: 2391 caaaacaaggaaacaaaaaa 2372
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>gb|AC171007.3| Gallus gallus BAC clone CH261-166I11 from chromosome ul, complete
             sequence
          Length = 223327

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 37    ccctttttcttctttcctca 56
             ||||||||||||||||||||
Sbjct: 44249 ccctttttcttctttcctca 44230
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>gb|AC007532.8| Drosophila melanogaster, chromosome 3R, region 82F-82F, BAC clone
             BACR01D10, complete sequence
          Length = 171105

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 93    atattcgcaaaacaaggaaa 112
             ||||||||||||||||||||
Sbjct: 59434 atattcgcaaaacaaggaaa 59453
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>gb|AC044790.4|AC044790 Homo sapiens chromosome 11 clone RP11-141J21 containing NRXN2 (NRXN2)
              gene, partial cds; and RST and OAT4 genes, complete cds,
              complete sequence
          Length = 170114

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 101    aaaacaaggaaacaaaaaag 120
              ||||||||||||||||||||
Sbjct: 132413 aaaacaaggaaacaaaaaag 132432
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>gb|AC037492.5|AC037492 Homo sapiens chromosome 8, clone RP11-38H17, complete sequence
          Length = 168278

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 101   aaaacaaggaaacaaaaaag 120
             ||||||||||||||||||||
Sbjct: 70757 aaaacaaggaaacaaaaaag 70776
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                            
Query: 466      gggaacaagctggggaaggagaagtcatcacttgggtcgccctt 509
                ||||| ||||| | ||| ||||| |||||||||||||| |||||
Sbjct: 13718301 gggaagaagcttgagaatgagaattcatcacttgggtccccctt 13718344
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 93       atattcgcaaaacaaggaaacaaaaaag 120
                ||||| |||||||||| |||||||||||
Sbjct: 39502802 atattggcaaaacaagtaaacaaaaaag 39502775
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>gb|AC079315.30| Homo sapiens 12 BAC RP11-380L11 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 121450

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 462   atctgggaacaagctgggga 481
             ||||||||||||||||||||
Sbjct: 74909 atctgggaacaagctgggga 74890
to top
>gb|AC155657.8| Mus musculus 6 BAC RP24-113L15 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 159299

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 505    cccttaagtcctgtcagtgg 524
              ||||||||||||||||||||
Sbjct: 153625 cccttaagtcctgtcagtgg 153606
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>gb|AC145899.4| Pan troglodytes BAC clone RP43-19O5 from chromosome 7, complete
            sequence
          Length = 176118

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 102  aaacaaggaaacaaaaaagg 121
            ||||||||||||||||||||
Sbjct: 3378 aaacaaggaaacaaaaaagg 3397
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>gb|AC016945.22| Homo sapiens 3 BAC RP11-31L6 (Roswell Park Cancer Institute Human BAC
            Library) complete sequence
          Length = 96001

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 41   ttttcttctttcctcactgt 60
            ||||||||||||||||||||
Sbjct: 7369 ttttcttctttcctcactgt 7350
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>gb|AC137076.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBb0033D20, from chromosome 3, complete sequence
          Length = 128707

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                          
Query: 466    gggaacaagctggggaaggagaagtcatcacttgggtcgccctt 509
              ||||| ||||| | ||| ||||| |||||||||||||| |||||
Sbjct: 113998 gggaagaagcttgagaatgagaattcatcacttgggtccccctt 114041
to top
>dbj|AP006531.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1417F08
          Length = 155536

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 93    atattcgcaaaacaaggaaacaaaaaag 120
             ||||| |||||||||| |||||||||||
Sbjct: 77816 atattggcaaaacaagtaaacaaaaaag 77789
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>gb|AC079246.2| Homo sapiens BAC clone CTD-2002G20 from 2, complete sequence
          Length = 99940

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 125   gtaaagtattatcatatcat 144
             ||||||||||||||||||||
Sbjct: 48872 gtaaagtattatcatatcat 48891
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>emb|BX569787.4| Zebrafish DNA sequence from clone CH211-208H1 in linkage group 6,
             complete sequence
          Length = 214158

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 151   actgtaaaaatgaatatgct 170
             ||||||||||||||||||||
Sbjct: 42482 actgtaaaaatgaatatgct 42463
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>emb|AJ292610.1|UEU292610 uncultured eubacterium WD2107 partial 16S rRNA gene, clone WD2107
          Length = 1449

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 360  ggtaggatcggtaactggga 379
            ||||||||||||||||||||
Sbjct: 1406 ggtaggatcggtaactggga 1425
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>gb|AE003603.4| Drosophila melanogaster chromosome 3R, section 5 of 118 of the complete
              sequence
          Length = 265289

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 93     atattcgcaaaacaaggaaa 112
              ||||||||||||||||||||
Sbjct: 113846 atattcgcaaaacaaggaaa 113827
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>dbj|AP001092.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-727K3, complete
             sequence
          Length = 160739

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 101   aaaacaaggaaacaaaaaag 120
             ||||||||||||||||||||
Sbjct: 28515 aaaacaaggaaacaaaaaag 28496
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>dbj|AP006288.2| Homo sapiens genomic DNA, chromosome 11 clone:RP11-128H22, complete
             sequence
          Length = 169259

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 101   aaaacaaggaaacaaaaaag 120
             ||||||||||||||||||||
Sbjct: 68493 aaaacaaggaaacaaaaaag 68474
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>emb|AL928539.4| Mouse DNA sequence from clone RP23-152D24 on chromosome X, complete
             sequence
          Length = 165789

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 37    ccctttttcttctttcctca 56
             ||||||||||||||||||||
Sbjct: 80014 ccctttttcttctttcctca 79995


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,454,092
Number of Sequences: 3902068
Number of extensions: 5454092
Number of successful extensions: 119489
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 119239
Number of HSP's gapped (non-prelim): 240
length of query: 562
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 539
effective length of database: 17,143,297,704
effective search space: 9240237462456
effective search space used: 9240237462456
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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