ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags10d09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK065367.1| Oryza sativa (japonica cultivar-group) cDNA clon... 139 1e-29
2gb|AC137923.4| Oryza sativa (japonica cultivar-group) chromosome... 101 3e-18
3dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 101 3e-18
4gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 101 3e-18
5gb|AY110000.1| Zea mays CL3390_1 mRNA sequence 82 3e-12
6ref|XM_469944.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.037
7gb|AC090871.11| Oryza sativa chromosome 3 BAC OSJNBb0060J21 geno... 48 0.037
8gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 48 0.037
9dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.037
10dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.037
11dbj|AP003622.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.037
12dbj|AK103914.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.037
13dbj|AK100700.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.037
14dbj|AK071881.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.037
15gb|AC166798.3| Mus musculus chromosome 3, clone RP23-442J19, com... 42 2.3
16gb|BT018940.1| Zea mays clone Contig86.F mRNA sequence 42 2.3
17gb|AC164423.2| Mus musculus chromosome 3, clone RP24-361M10, com... 42 2.3
18gb|AC161931.6| Mus musculus chromosome 3, clone RP23-290N20, com... 42 2.3
19gb|AY109100.1| Zea mays PCO081548 mRNA sequence 42 2.3
20gb|CP000102.1| Methanosphaera stadtmanae DSM 3091, complete genome 42 2.3
21ref|NM_121425.2| Arabidopsis thaliana ATP binding / protein kina... 40 9.0
22gb|U00034.1| Caenorhabditis elegans cosmid C06E8, complete sequence 40 9.0
23gb|AC150389.2| Branchiostoma floridae clone CH302-114C5, complet... 40 9.0
24ref|XM_601748.2| PREDICTED: Bos taurus similar to serine/threoni... 40 9.0
25gb|AC161281.2| Pan troglodytes BAC clone CH251-392N12 from chrom... 40 9.0
26gb|AC121539.7| Mus musculus chromosome 17, clone RP23-469C5, com... 40 9.0
27emb|BX005408.12| Zebrafish DNA sequence from clone DKEY-156H23 i... 40 9.0
28ref|XM_762959.1| Giardia lamblia ATCC 50803 hypothetical protein... 40 9.0
29gb|AC079760.6| Homo sapiens BAC clone RP11-142A5 from 7, complet... 40 9.0
30ref|XM_544331.2| PREDICTED: Canis familiaris similar to serine/t... 40 9.0
31emb|AL117345.21|HSJ416F21 Human DNA sequence from clone RP3-416F... 40 9.0
32emb|X87931.1|BVSIEP1LP B.vulgaris mRNA for SIEP1L protein 40 9.0
33emb|BX571857.1| Staphylococcus aureus strain MSSA476, complete g... 40 9.0
34dbj|BA000017.4| Staphylococcus aureus subsp. aureus Mu50 DNA, co... 40 9.0
35gb|AC012533.11| Homo sapiens, clone RP11-62E9, complete sequence 40 9.0
36gb|AC078935.5| Staphylococcus aureus clone sabac-7, complete seq... 40 9.0
37gb|AC022778.9| Homo sapiens chromosome 8, clone RP11-172E10, com... 40 9.0
38gb|AC099058.2| Homo sapiens chromosome 3 clone RP11-714G12, comp... 40 9.0
39gb|CP000046.1| Staphylococcus aureus subsp. aureus COL, complete... 40 9.0
40emb|BX649530.13| Zebrafish DNA sequence from clone DKEYP-33B5 in... 40 9.0
41emb|BX682558.6| Zebrafish DNA sequence from clone DKEY-225F5 in ... 40 9.0
42gb|CP000253.1| Staphylococcus aureus subsp. aureus NCTC 8325, co... 40 9.0
43gb|CP000255.1| Staphylococcus aureus subsp. aureus USA300, compl... 40 9.0
44emb|BX005223.19| Zebrafish DNA sequence from clone DKEY-53K12, c... 40 9.0
45gb|AC040164.5|AC040164 Homo sapiens chromosome 16 clone RP11-358... 40 9.0
46gb|AC103778.2| Homo sapiens chromosome 8, clone RP11-463C14, com... 40 9.0
47gb|AC007907.3| Homo sapiens chromosome 16 clone RP11-324D17, com... 40 9.0
48gb|AC010090.7| Homo sapiens BAC clone RP11-294G19 from 2, comple... 40 9.0
49dbj|BA000033.2| Staphylococcus aureus subsp. aureus MW2 DNA, com... 40 9.0
50dbj|BA000018.3| Staphylococcus aureus subsp. aureus N315 genomic... 40 9.0
51dbj|AB007650.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 9.0
52dbj|AK111758.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 9.0
53gb|AC154490.2| Mus musculus BAC clone RP24-105G19 from 17, compl... 40 9.0
54emb|BX927177.12| Zebrafish DNA sequence from clone DKEY-78D16 in... 40 9.0
55gb|AC130926.4| Rattus norvegicus BAC CH230-39O11 (Children's Ho... 40 9.0
56emb|CT025549.13| Mouse DNA sequence from clone RP24-235K10 on ch... 40 9.0
57emb|CR354395.20| Zebrafish DNA sequence from clone DKEYP-45G11 i... 40 9.0
58dbj|D21131.1|STASRM551A Staphylococcus aureus gene for a partici... 40 9.0
59emb|AL731664.14| Mouse DNA sequence from clone RP23-400M24 on ch... 40 9.0 
>dbj|AK065367.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013021L08, full
            insert sequence
          Length = 3773

 Score =  139 bits (70), Expect = 1e-29
 Identities = 181/218 (83%)
 Strand = Plus / Minus

                                                                        
Query: 440  cccataagtgcttcaagtataatgcaaccaaaagaacatacatcatcctgcaaagtttcc 499
            ||||||||| ||||||||| ||| |  |||||||||   |||||||||| |||| |||||
Sbjct: 2613 cccataagtacttcaagtaaaatacctccaaaagaaagcacatcatcctccaaattttcc 2554

                                                                        
Query: 500  aattcttcagcattattttgtatgtatctctgcccttctcctattgcctcatgtttgtat 559
            |||||| || |||| | || ||   |||||||||||||||||  ||||||||||||||||
Sbjct: 2553 aattctccaccattgtcttctacacatctctgcccttctcctgctgcctcatgtttgtat 2494

                                                                        
Query: 560  atctcctctgtgattatggacaaaccgtagtcgctcagttttgcaatatggtgttcatca 619
            |||||||| || |||||||| |  || ||||| ||||||||||| | | |||||||||||
Sbjct: 2493 atctcctccgtaattatggatagcccatagtcactcagttttgccacaaggtgttcatca 2434

                                                  
Query: 620  agcaaaatattagaagttttcaaccgattatacaagga 657
            || |||||| ||||||  || ||||| ||||| |||||
Sbjct: 2433 agtaaaatactagaaggctttaaccggttatataagga 2396



 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 176/219 (80%)
 Strand = Plus / Minus

                                                                        
Query: 157  ctaacaggcttgcgacgaaacttctgatctcagatcaccatcggccgtcgcctggatctg 216
            ||||||||  ||||| ||||||||||||||| | || ||||| |   | |||||||  ||
Sbjct: 3396 ctaacaggtctgcgaggaaacttctgatctctggtccccatcagatattgcctggacttg 3337

                                                                        
Query: 217  cgcagcgtactgcaggttccagagaacctcttcgatggagggccgggtcgaagattcaac 276
             |||||||||||||| |||||||||||||||||||| || |||| ||  |||||||||||
Sbjct: 3336 tgcagcgtactgcagattccagagaacctcttcgatcgaaggcctggctgaagattcaac 3277

                                                                        
Query: 277  ggataggcatttgatcgtgatggagaccaccatcgagagtgaatcctgcgatgaggtccc 336
             ||||  |||||||  || ||||| | ||||||||| |  ||||| ||||| ||||| | 
Sbjct: 3276 tgataaacatttgacagtaatggaaatcaccatcgacaaagaatcttgcgaagaggtgct 3217

                                                   
Query: 337  aagcacgaccgggtccagaacgcgctcacgctcttcctg 375
             ||| | ||||| || |||||  |||| |||||||||||
Sbjct: 3216 cagctcaaccggatcaagaacttgctcgcgctcttcctg 3178
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>gb|AC137923.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0066C04, complete sequence
          Length = 133944

 Score =  101 bits (51), Expect = 3e-18
 Identities = 177/219 (80%)
 Strand = Plus / Plus

                                                                         
Query: 157   ctaacaggcttgcgacgaaacttctgatctcagatcaccatcggccgtcgcctggatctg 216
             ||||||||  ||||| ||||||||||||||| | || ||||| |   | |||||||  ||
Sbjct: 68896 ctaacaggtctgcgaggaaacttctgatctctggtccccatcagatattgcctggacttg 68955

                                                                         
Query: 217   cgcagcgtactgcaggttccagagaacctcttcgatggagggccgggtcgaagattcaac 276
              |||||||||||||| |||||||||||||||||||| || |||| ||  |||||||||||
Sbjct: 68956 tgcagcgtactgcagattccagagaacctcttcgatcgaaggcctggctgaagattcaac 69015

                                                                         
Query: 277   ggataggcatttgatcgtgatggagaccaccatcgagagtgaatcctgcgatgaggtccc 336
              ||||  |||||||  || ||||| | ||||||||| |  ||||| ||||| ||||| | 
Sbjct: 69016 tgataaacatttgacagtaatggaaatcaccatcgacaaagaatcttgcgaagaggtgct 69075

                                                    
Query: 337   aagcacgaccgggtccagaacgcgctcacgctcttcctg 375
              ||||| ||||| || |||||  |||| |||||||||||
Sbjct: 69076 cagcacaaccggatcaagaacttgctcgcgctcttcctg 69114



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 95/112 (84%)
 Strand = Plus / Plus

                                                                         
Query: 546   cctcatgtttgtatatctcctctgtgattatggacaaaccgtagtcgctcagttttgcaa 605
             |||||||||||||||||||||| || |||||||| |  || ||||| ||||||||||| |
Sbjct: 70006 cctcatgtttgtatatctcctccgtaattatggatagcccatagtcactcagttttgcca 70065

                                                                 
Query: 606   tatggtgttcatcaagcaaaatattagaagttttcaaccgattatacaagga 657
              | ||||||||||||| |||||| ||||||  || ||||| ||||| |||||
Sbjct: 70066 caaggtgttcatcaagtaaaatactagaaggctttaaccggttatataagga 70117
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  101 bits (51), Expect = 3e-18
 Identities = 177/219 (80%)
 Strand = Plus / Minus

                                                                            
Query: 157      ctaacaggcttgcgacgaaacttctgatctcagatcaccatcggccgtcgcctggatctg 216
                ||||||||  ||||| ||||||||||||||| | || ||||| |   | |||||||  ||
Sbjct: 11678830 ctaacaggtctgcgaggaaacttctgatctctggtccccatcagatattgcctggacttg 11678771

                                                                            
Query: 217      cgcagcgtactgcaggttccagagaacctcttcgatggagggccgggtcgaagattcaac 276
                 |||||||||||||| |||||||||||||||||||| || |||| ||  |||||||||||
Sbjct: 11678770 tgcagcgtactgcagattccagagaacctcttcgatcgaaggcctggctgaagattcaac 11678711

                                                                            
Query: 277      ggataggcatttgatcgtgatggagaccaccatcgagagtgaatcctgcgatgaggtccc 336
                 ||||  |||||||  || ||||| | ||||||||| |  ||||| ||||| ||||| | 
Sbjct: 11678710 tgataaacatttgacagtaatggaaatcaccatcgacaaagaatcttgcgaagaggtgct 11678651

                                                       
Query: 337      aagcacgaccgggtccagaacgcgctcacgctcttcctg 375
                 ||||| ||||| || |||||  |||| |||||||||||
Sbjct: 11678650 cagcacaaccggatcaagaacttgctcgcgctcttcctg 11678612



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 95/112 (84%)
 Strand = Plus / Minus

                                                                            
Query: 546      cctcatgtttgtatatctcctctgtgattatggacaaaccgtagtcgctcagttttgcaa 605
                |||||||||||||||||||||| || |||||||| |  || ||||| ||||||||||| |
Sbjct: 11677720 cctcatgtttgtatatctcctccgtaattatggatagcccatagtcactcagttttgcca 11677661

                                                                    
Query: 606      tatggtgttcatcaagcaaaatattagaagttttcaaccgattatacaagga 657
                 | ||||||||||||| |||||| ||||||  || ||||| ||||| |||||
Sbjct: 11677660 caaggtgttcatcaagtaaaatactagaaggctttaaccggttatataagga 11677609
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  101 bits (51), Expect = 3e-18
 Identities = 177/219 (80%)
 Strand = Plus / Minus

                                                                            
Query: 157      ctaacaggcttgcgacgaaacttctgatctcagatcaccatcggccgtcgcctggatctg 216
                ||||||||  ||||| ||||||||||||||| | || ||||| |   | |||||||  ||
Sbjct: 11758019 ctaacaggtctgcgaggaaacttctgatctctggtccccatcagatattgcctggacttg 11757960

                                                                            
Query: 217      cgcagcgtactgcaggttccagagaacctcttcgatggagggccgggtcgaagattcaac 276
                 |||||||||||||| |||||||||||||||||||| || |||| ||  |||||||||||
Sbjct: 11757959 tgcagcgtactgcagattccagagaacctcttcgatcgaaggcctggctgaagattcaac 11757900

                                                                            
Query: 277      ggataggcatttgatcgtgatggagaccaccatcgagagtgaatcctgcgatgaggtccc 336
                 ||||  |||||||  || ||||| | ||||||||| |  ||||| ||||| ||||| | 
Sbjct: 11757899 tgataaacatttgacagtaatggaaatcaccatcgacaaagaatcttgcgaagaggtgct 11757840

                                                       
Query: 337      aagcacgaccgggtccagaacgcgctcacgctcttcctg 375
                 ||||| ||||| || |||||  |||| |||||||||||
Sbjct: 11757839 cagcacaaccggatcaagaacttgctcgcgctcttcctg 11757801



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 95/112 (84%)
 Strand = Plus / Minus

                                                                            
Query: 546      cctcatgtttgtatatctcctctgtgattatggacaaaccgtagtcgctcagttttgcaa 605
                |||||||||||||||||||||| || |||||||| |  || ||||| ||||||||||| |
Sbjct: 11756909 cctcatgtttgtatatctcctccgtaattatggatagcccatagtcactcagttttgcca 11756850

                                                                    
Query: 606      tatggtgttcatcaagcaaaatattagaagttttcaaccgattatacaagga 657
                 | ||||||||||||| |||||| ||||||  || ||||| ||||| |||||
Sbjct: 11756849 caaggtgttcatcaagtaaaatactagaaggctttaaccggttatataagga 11756798
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>gb|AY110000.1| Zea mays CL3390_1 mRNA sequence
          Length = 574

 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 80/93 (86%)
 Strand = Plus / Plus

                                                                       
Query: 427 atgtaattttgagcccataagtgcttcaagtataatgcaaccaaaagaacatacatcatc 486
           ||||||||||| |||||||||| |||| |||| |||  |||||||||| |||||||||||
Sbjct: 423 atgtaattttgggcccataagtacttccagtagaatataaccaaaagagcatacatcatc 482

                                            
Query: 487 ctgcaaagtttccaattcttcagcattattttg 519
           || |||| |||||| ||||  ||||| ||||||
Sbjct: 483 ctccaaattttccatttctgtagcatcattttg 515



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                          
Query: 546 cctcatgtttgtatatctcctctgtgattat 576
           |||||||| ||||||||||||||||||||||
Sbjct: 542 cctcatgtctgtatatctcctctgtgattat 572



 Score = 40.1 bits (20), Expect = 9.0
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                               
Query: 208 ctggatctgcgcagcgtactgcaggttccagagaac 243
           ||||| ||| ||||| || |||||||||||||||||
Sbjct: 204 ctggacctgggcagcatattgcaggttccagagaac 239
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>ref|XM_469944.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3633

 Score = 48.1 bits (24), Expect = 0.037
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                        
Query: 218  gcagcgtactgcaggttccagagaacctcttcgatggagggccg 261
            |||||| |||||||||||||||| || || |||||||| |||||
Sbjct: 2654 gcagcgaactgcaggttccagaggacgtcctcgatggacggccg 2611
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>gb|AC090871.11| Oryza sativa chromosome 3 BAC OSJNBb0060J21 genomic sequence, complete
              sequence
          Length = 162497

 Score = 48.1 bits (24), Expect = 0.037
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                          
Query: 218    gcagcgtactgcaggttccagagaacctcttcgatggagggccg 261
              |||||| |||||||||||||||| || || |||||||| |||||
Sbjct: 118317 gcagcgaactgcaggttccagaggacgtcctcgatggacggccg 118360
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 48.1 bits (24), Expect = 0.037
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                            
Query: 218      gcagcgtactgcaggttccagagaacctcttcgatggagggccg 261
                |||||| |||||||||||||||| || || |||||||| |||||
Sbjct: 32625590 gcagcgaactgcaggttccagaggacgtcctcgatggacggccg 32625547
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 48.1 bits (24), Expect = 0.037
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                        
Query: 223      gtactgcaggttccagagaacctcttcgatggagggccgg 262
                |||||||||||||||||| || || || ||||||||||||
Sbjct: 22752314 gtactgcaggttccagaggacgtcctcaatggagggccgg 22752275
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 48.1 bits (24), Expect = 0.037
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                            
Query: 218      gcagcgtactgcaggttccagagaacctcttcgatggagggccg 261
                |||||| |||||||||||||||| || || |||||||| |||||
Sbjct: 32716100 gcagcgaactgcaggttccagaggacgtcctcgatggacggccg 32716057
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>dbj|AP003622.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0633E08
          Length = 136471

 Score = 48.1 bits (24), Expect = 0.037
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                     
Query: 223   gtactgcaggttccagagaacctcttcgatggagggccgg 262
             |||||||||||||||||| || || || ||||||||||||
Sbjct: 39265 gtactgcaggttccagaggacgtcctcaatggagggccgg 39226
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>dbj|AK103914.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-012-G10, full
           insert sequence
          Length = 1384

 Score = 48.1 bits (24), Expect = 0.037
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                       
Query: 218 gcagcgtactgcaggttccagagaacctcttcgatggagggccg 261
           |||||| |||||||||||||||| || || |||||||| |||||
Sbjct: 865 gcagcgaactgcaggttccagaggacgtcctcgatggacggccg 822
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>dbj|AK100700.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023114M22, full
            insert sequence
          Length = 3125

 Score = 48.1 bits (24), Expect = 0.037
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                        
Query: 218  gcagcgtactgcaggttccagagaacctcttcgatggagggccg 261
            |||||| |||||||||||||||| || || |||||||| |||||
Sbjct: 2654 gcagcgaactgcaggttccagaggacgtcctcgatggacggccg 2611
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>dbj|AK071881.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013045O17, full
            insert sequence
          Length = 3124

 Score = 48.1 bits (24), Expect = 0.037
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                        
Query: 218  gcagcgtactgcaggttccagagaacctcttcgatggagggccg 261
            |||||| |||||||||||||||| || || |||||||| |||||
Sbjct: 2656 gcagcgaactgcaggttccagaggacgtcctcgatggacggccg 2613
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>gb|AC166798.3| Mus musculus chromosome 3, clone RP23-442J19, complete sequence
          Length = 216754

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 620   agcaaaatattagaagttttc 640
             |||||||||||||||||||||
Sbjct: 29532 agcaaaatattagaagttttc 29512
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>gb|BT018940.1| Zea mays clone Contig86.F mRNA sequence
          Length = 1420

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                             
Query: 223  gtactgcaggttccagagaacctcttcgatgga 255
            |||||||||||||||||| || || ||||||||
Sbjct: 1075 gtactgcaggttccagagcacgtcgtcgatgga 1043
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>gb|AC164423.2| Mus musculus chromosome 3, clone RP24-361M10, complete sequence
          Length = 151556

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 620  agcaaaatattagaagttttc 640
            |||||||||||||||||||||
Sbjct: 7240 agcaaaatattagaagttttc 7220
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>gb|AC161931.6| Mus musculus chromosome 3, clone RP23-290N20, complete sequence
          Length = 186062

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 620  agcaaaatattagaagttttc 640
            |||||||||||||||||||||
Sbjct: 3167 agcaaaatattagaagttttc 3187
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>gb|AY109100.1| Zea mays PCO081548 mRNA sequence
          Length = 1675

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                             
Query: 223  gtactgcaggttccagagaacctcttcgatgga 255
            |||||||||||||||||| || || ||||||||
Sbjct: 1313 gtactgcaggttccagagcacgtcgtcgatgga 1281
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>gb|CP000102.1| Methanosphaera stadtmanae DSM 3091, complete genome
          Length = 1767403

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 447    gtgcttcaagtataatgcaac 467
              |||||||||||||||||||||
Sbjct: 463859 gtgcttcaagtataatgcaac 463879
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>ref|NM_121425.2| Arabidopsis thaliana ATP binding / protein kinase/ protein
            serine/threonine kinase AT5G14210 mRNA, complete cds
          Length = 2564

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 599  tttgcaatatggtgttcatcaagcaaaatatt 630
            |||||||| | |||||| ||||||||||||||
Sbjct: 1913 tttgcaatcttgtgttcgtcaagcaaaatatt 1882
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>gb|U00034.1| Caenorhabditis elegans cosmid C06E8, complete sequence
          Length = 26435

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 505  ttcagcattattttgtatgt 524
            ||||||||||||||||||||
Sbjct: 9367 ttcagcattattttgtatgt 9348
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>gb|AC150389.2| Branchiostoma floridae clone CH302-114C5, complete sequence
          Length = 192476

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 298    ggagaccaccatcgagagtg 317
              ||||||||||||||||||||
Sbjct: 159133 ggagaccaccatcgagagtg 159152
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>ref|XM_601748.2| PREDICTED: Bos taurus similar to serine/threonine kinase 32A
           (LOC523449), mRNA
          Length = 1260

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 611 tgttcatcaagcaaaatatt 630
           ||||||||||||||||||||
Sbjct: 470 tgttcatcaagcaaaatatt 451
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>gb|AC161281.2| Pan troglodytes BAC clone CH251-392N12 from chromosome 7, complete
             sequence
          Length = 159549

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 525   atctctgcccttctcctatt 544
             ||||||||||||||||||||
Sbjct: 56672 atctctgcccttctcctatt 56653
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>gb|AC121539.7| Mus musculus chromosome 17, clone RP23-469C5, complete sequence
          Length = 214690

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 466   accaaaagaacatacatcat 485
             ||||||||||||||||||||
Sbjct: 77235 accaaaagaacatacatcat 77254
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>emb|BX005408.12| Zebrafish DNA sequence from clone DKEY-156H23 in linkage group 9,
              complete sequence
          Length = 210207

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 9      tctgctgtgtaaaatgcgca 28
              ||||||||||||||||||||
Sbjct: 145217 tctgctgtgtaaaatgcgca 145198
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>ref|XM_762959.1| Giardia lamblia ATCC 50803 hypothetical protein (GLP_663_6261_4543)
           partial mRNA
          Length = 1719

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 238 gagaacctcttcgatggagggccg 261
           ||||| ||||||||||||||||||
Sbjct: 966 gagaagctcttcgatggagggccg 943
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>gb|AC079760.6| Homo sapiens BAC clone RP11-142A5 from 7, complete sequence
          Length = 129808

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 525   atctctgcccttctcctatt 544
             ||||||||||||||||||||
Sbjct: 97365 atctctgcccttctcctatt 97384
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>ref|XM_544331.2| PREDICTED: Canis familiaris similar to serine/threonine kinase 32A
           (LOC487203), mRNA
          Length = 1458

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 611 tgttcatcaagcaaaatatt 630
           ||||||||||||||||||||
Sbjct: 821 tgttcatcaagcaaaatatt 802
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>emb|AL117345.21|HSJ416F21 Human DNA sequence from clone RP3-416F21 on chromosome 6q26-27 Contains
             the 3' end of the PDE10A gene for phosphodiesterase 10A
             and the 5' end of a novel gene, complete sequence
          Length = 143072

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 555   tgtatatctcctctgtgatt 574
             ||||||||||||||||||||
Sbjct: 59618 tgtatatctcctctgtgatt 59637
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>emb|X87931.1|BVSIEP1LP B.vulgaris mRNA for SIEP1L protein
          Length = 1595

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 615  catcaagcaaaatattagaa 634
            ||||||||||||||||||||
Sbjct: 1528 catcaagcaaaatattagaa 1509
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>emb|BX571857.1| Staphylococcus aureus strain MSSA476, complete genome
          Length = 2799802

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 508    agcattattttgtatgtatc 527
              ||||||||||||||||||||
Sbjct: 795422 agcattattttgtatgtatc 795441
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>dbj|BA000017.4| Staphylococcus aureus subsp. aureus Mu50 DNA, complete genome
          Length = 2878529

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 508    agcattattttgtatgtatc 527
              ||||||||||||||||||||
Sbjct: 825467 agcattattttgtatgtatc 825486
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>gb|AC012533.11| Homo sapiens, clone RP11-62E9, complete sequence
          Length = 191358

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 129    ttccatgctgccatgctgct 148
              ||||||||||||||||||||
Sbjct: 114593 ttccatgctgccatgctgct 114612
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>gb|AC078935.5| Staphylococcus aureus clone sabac-7, complete sequence
          Length = 53354

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 508   agcattattttgtatgtatc 527
             ||||||||||||||||||||
Sbjct: 24773 agcattattttgtatgtatc 24792
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>gb|AC022778.9| Homo sapiens chromosome 8, clone RP11-172E10, complete sequence
          Length = 138953

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 129   ttccatgctgccatgctgct 148
             ||||||||||||||||||||
Sbjct: 34616 ttccatgctgccatgctgct 34635
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>gb|AC099058.2| Homo sapiens chromosome 3 clone RP11-714G12, complete sequence
          Length = 196623

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 520   tatgtatctctgcccttctc 539
             ||||||||||||||||||||
Sbjct: 69596 tatgtatctctgcccttctc 69577
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>gb|CP000046.1| Staphylococcus aureus subsp. aureus COL, complete genome
          Length = 2809422

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 508    agcattattttgtatgtatc 527
              ||||||||||||||||||||
Sbjct: 833874 agcattattttgtatgtatc 833893
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>emb|BX649530.13| Zebrafish DNA sequence from clone DKEYP-33B5 in linkage group 17,
             complete sequence
          Length = 150656

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 617   tcaagcaaaatattagaagttttcaacc 644
             ||||||||||||||| || |||||||||
Sbjct: 97834 tcaagcaaaatattacaaattttcaacc 97807
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>emb|BX682558.6| Zebrafish DNA sequence from clone DKEY-225F5 in linkage group 3, complete
              sequence
          Length = 146807

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 558    atatctcctctgtgattatg 577
              ||||||||||||||||||||
Sbjct: 102926 atatctcctctgtgattatg 102907
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>gb|CP000253.1| Staphylococcus aureus subsp. aureus NCTC 8325, complete genome
          Length = 2821361

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 508    agcattattttgtatgtatc 527
              ||||||||||||||||||||
Sbjct: 745281 agcattattttgtatgtatc 745300
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>gb|CP000255.1| Staphylococcus aureus subsp. aureus USA300, complete genome
          Length = 2872769

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 508    agcattattttgtatgtatc 527
              ||||||||||||||||||||
Sbjct: 812273 agcattattttgtatgtatc 812292
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>emb|BX005223.19| Zebrafish DNA sequence from clone DKEY-53K12, complete sequence
          Length = 242587

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 558    atatctcctctgtgattatg 577
              ||||||||||||||||||||
Sbjct: 135738 atatctcctctgtgattatg 135757
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>gb|AC040164.5|AC040164 Homo sapiens chromosome 16 clone RP11-358B6, complete sequence
          Length = 164968

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 419   ccttttctatgtaattttga 438
             ||||||||||||||||||||
Sbjct: 74531 ccttttctatgtaattttga 74550
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>gb|AC103778.2| Homo sapiens chromosome 8, clone RP11-463C14, complete sequence
          Length = 161500

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 465    aaccaaaagaacatacatca 484
              ||||||||||||||||||||
Sbjct: 118051 aaccaaaagaacatacatca 118032
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>gb|AC007907.3| Homo sapiens chromosome 16 clone RP11-324D17, complete sequence
          Length = 170669

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 419    ccttttctatgtaattttga 438
              ||||||||||||||||||||
Sbjct: 136881 ccttttctatgtaattttga 136862
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>gb|AC010090.7| Homo sapiens BAC clone RP11-294G19 from 2, complete sequence
          Length = 115597

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 116   tgcaggtcatggtttccatg 135
             ||||||||||||||||||||
Sbjct: 63840 tgcaggtcatggtttccatg 63821
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>dbj|BA000033.2| Staphylococcus aureus subsp. aureus MW2 DNA, complete genome, strain:MW2
          Length = 2820462

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 508    agcattattttgtatgtatc 527
              ||||||||||||||||||||
Sbjct: 796994 agcattattttgtatgtatc 797013
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>dbj|BA000018.3| Staphylococcus aureus subsp. aureus N315 genomic DNA, complete genome
          Length = 2814816

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 508    agcattattttgtatgtatc 527
              ||||||||||||||||||||
Sbjct: 801274 agcattattttgtatgtatc 801293
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>dbj|AB007650.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MUA22
          Length = 65465

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 599   tttgcaatatggtgttcatcaagcaaaatatt 630
             |||||||| | |||||| ||||||||||||||
Sbjct: 55055 tttgcaatcttgtgttcgtcaagcaaaatatt 55086
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>dbj|AK111758.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023058G03, full
           insert sequence
          Length = 923

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                               
Query: 223 gtactgcaggttccagagaacctcttcgatggaggg 258
           |||||||||||||||||| || || || ||||||||
Sbjct: 593 gtactgcaggttccagaggacgtcctcaatggaggg 558
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>gb|AC154490.2| Mus musculus BAC clone RP24-105G19 from 17, complete sequence
          Length = 174030

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 466  accaaaagaacatacatcat 485
            ||||||||||||||||||||
Sbjct: 5024 accaaaagaacatacatcat 5043
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>emb|BX927177.12| Zebrafish DNA sequence from clone DKEY-78D16 in linkage group 19,
              complete sequence
          Length = 154891

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 558    atatctcctctgtgattatg 577
              ||||||||||||||||||||
Sbjct: 134939 atatctcctctgtgattatg 134920
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>gb|AC130926.4| Rattus norvegicus  BAC CH230-39O11 (Children's Hospital Oakland
            Research Institute Rat (BN/SsNHsd/MCW) BAC library)
            complete sequence
          Length = 217219

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 463  gcaaccaaaagaacatacat 482
            ||||||||||||||||||||
Sbjct: 7719 gcaaccaaaagaacatacat 7738
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>emb|CT025549.13| Mouse DNA sequence from clone RP24-235K10 on chromosome 13, complete
             sequence
          Length = 162143

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 127   gtttccatgctgccatgctg 146
             ||||||||||||||||||||
Sbjct: 39180 gtttccatgctgccatgctg 39161
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>emb|CR354395.20| Zebrafish DNA sequence from clone DKEYP-45G11 in linkage group 12,
             complete sequence
          Length = 160211

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 558   atatctcctctgtgattatg 577
             ||||||||||||||||||||
Sbjct: 52729 atatctcctctgtgattatg 52710
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>dbj|D21131.1|STASRM551A Staphylococcus aureus gene for a participant in homogeneous
            expression of high-level methicillin resistance, complete
            cds
          Length = 1436

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 508  agcattattttgtatgtatc 527
            ||||||||||||||||||||
Sbjct: 1042 agcattattttgtatgtatc 1061
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>emb|AL731664.14| Mouse DNA sequence from clone RP23-400M24 on chromosome 4, complete
             sequence
          Length = 98653

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 500   aattcttcagcattattttg 519
             ||||||||||||||||||||
Sbjct: 92101 aattcttcagcattattttg 92082


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,278,880
Number of Sequences: 3902068
Number of extensions: 6278880
Number of successful extensions: 126048
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 125705
Number of HSP's gapped (non-prelim): 338
length of query: 657
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 634
effective length of database: 17,143,297,704
effective search space: 10868850744336
effective search space used: 10868850744336
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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