ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags10d03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CALX_SOYBN (Q39817) Calnexin homolog precursor 119 6e-27
2CALX2_ARATH (Q38798) Calnexin homolog 2 precursor 107 3e-23
3CALX_PEA (O82709) Calnexin homolog precursor 104 3e-22
4CALX1_ARATH (P29402) Calnexin homolog 1 precursor 97 4e-20
5CALX_HELTU (Q39994) Calnexin homolog precursor 81 3e-15
6SREC2_HUMAN (Q96GP6) Scavenger receptor class F member 2 precurs... 32 2.3
7KRA56_HUMAN (Q6L8G9) Keratin-associated protein 5-6 (Keratin-ass... 31 3.9
8ZNF77_HUMAN (Q15935) Zinc finger protein 77 (ZNFpT1) 30 5.1

>CALX_SOYBN (Q39817) Calnexin homolog precursor|
          Length = 546

 Score =  119 bits (299), Expect = 6e-27
 Identities = 59/106 (55%), Positives = 72/106 (67%)
 Frame = -2

Query: 674 NILIADDEKVAMSILEKTWKPKFVVXXXXXXXXXXXXXXXEDLSEFQKKIFSVLYKIADI 495
           N+LIA+D+KVA S  E TWKPKF V               + +S FQKK+F +LYKIADI
Sbjct: 392 NVLIANDDKVAESYRETTWKPKFTVEKDKLKAEEEAATGSDGISGFQKKVFDLLYKIADI 451

Query: 494 PFLEPYKIKIIDLIEKGEKQPNITISILASVAVILVTVLFRTIFGG 357
           PFL  +K KI DLIEK EKQPN+TI IL +V V+ V++ FR IFGG
Sbjct: 452 PFLSEHKSKIFDLIEKAEKQPNLTIGILVAVVVVFVSIFFRLIFGG 497



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>CALX2_ARATH (Q38798) Calnexin homolog 2 precursor|
          Length = 532

 Score =  107 bits (267), Expect = 3e-23
 Identities = 53/127 (41%), Positives = 73/127 (57%)
 Frame = -2

Query: 674 NILIADDEKVAMSILEKTWKPKFVVXXXXXXXXXXXXXXXEDLSEFQKKIFSVLYKIADI 495
           NILI+ DEKVA +  + TWKPKF V               + L  +QKK+F +LYK+ADI
Sbjct: 385 NILISKDEKVAETYRQSTWKPKFDVEKEKQKAEDEAAGEADGLKSYQKKVFDLLYKVADI 444

Query: 494 PFLEPYKIKIIDLIEKGEKQPNITISILASVAVILVTVLFRTIFGGXXXXXXXXXXXXXX 315
            FL  YK KI++LIEK E QPN+TI +L S+ ++ +++ F+ IFGG              
Sbjct: 445 SFLSAYKSKIMELIEKAETQPNLTIGVLISIVIVFLSLFFKLIFGGAKAKVEKKKPETAA 504

Query: 314 XPSATEA 294
             S +EA
Sbjct: 505 ETSTSEA 511



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>CALX_PEA (O82709) Calnexin homolog precursor|
          Length = 551

 Score =  104 bits (259), Expect = 3e-22
 Identities = 55/112 (49%), Positives = 68/112 (60%), Gaps = 6/112 (5%)
 Frame = -2

Query: 674 NILIADDEKVAMSILEKTWKPKFVVXXXXXXXXXXXXXXXEDLSE------FQKKIFSVL 513
           N+LIA D+K+A S  E TWKPKF +                  SE       QKK F +L
Sbjct: 391 NVLIAKDDKIAESYRETTWKPKFNIEKEKQKHEEEAAAAAAARSESEGIAGIQKKAFDLL 450

Query: 512 YKIADIPFLEPYKIKIIDLIEKGEKQPNITISILASVAVILVTVLFRTIFGG 357
           YKIADI FL   K KII++IEKGEKQPN+TI I+ SV ++ V++ FR IFGG
Sbjct: 451 YKIADIAFLSGQKEKIIEIIEKGEKQPNLTIGIIVSVVIVFVSIFFRLIFGG 502



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>CALX1_ARATH (P29402) Calnexin homolog 1 precursor|
          Length = 530

 Score = 97.1 bits (240), Expect = 4e-20
 Identities = 47/106 (44%), Positives = 65/106 (61%)
 Frame = -2

Query: 674 NILIADDEKVAMSILEKTWKPKFVVXXXXXXXXXXXXXXXEDLSEFQKKIFSVLYKIADI 495
           NILIA DEKVA +  + TWKPKF V               + L  +QK +F +L K+AD+
Sbjct: 383 NILIAKDEKVAETYRQTTWKPKFDVEKEKQKAEEEAAGSADGLKSYQKVVFDLLNKVADL 442

Query: 494 PFLEPYKIKIIDLIEKGEKQPNITISILASVAVILVTVLFRTIFGG 357
            FL  YK KI +LIEK E+QPN+TI +L ++ V+  ++  + IFGG
Sbjct: 443 SFLSAYKSKITELIEKAEQQPNLTIGVLVAIVVVFFSLFLKLIFGG 488



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>CALX_HELTU (Q39994) Calnexin homolog precursor|
          Length = 540

 Score = 80.9 bits (198), Expect = 3e-15
 Identities = 44/112 (39%), Positives = 63/112 (56%), Gaps = 6/112 (5%)
 Frame = -2

Query: 674 NILIADDEKVA------MSILEKTWKPKFVVXXXXXXXXXXXXXXXEDLSEFQKKIFSVL 513
           NILIA DEK A      +      WK +                  + L   QK +F VL
Sbjct: 387 NILIASDEKTAAKSGILLGSRSLRWKKR-------NRRLKKNQPLLDGLKGIQKAVFDVL 439

Query: 512 YKIADIPFLEPYKIKIIDLIEKGEKQPNITISILASVAVILVTVLFRTIFGG 357
           YKIAD+PFL  +K+K+++LIEK E QPNITI ++ S+ V++ ++L + +FGG
Sbjct: 440 YKIADLPFLGDHKVKVLELIEKAETQPNITIGVIVSIIVVIFSILLKLLFGG 491



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>SREC2_HUMAN (Q96GP6) Scavenger receptor class F member 2 precursor (Scavenger|
           receptor expressed by endothelial cells 2 protein)
           (SREC-II) (SRECRP-1)
          Length = 866

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
 Frame = -1

Query: 414 FGLSCCHPCYCALQNHFRWQEGSGTCEA----RCCGEEAQCHGSRC 289
           +G  C   CYC+  +    Q G+  C A    R C  +  C+ S C
Sbjct: 177 WGAQCASACYCSATSRCDPQTGACLCHAGWWGRSCNNQCACNSSPC 222



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>KRA56_HUMAN (Q6L8G9) Keratin-associated protein 5-6 (Keratin-associated protein|
           5.6) (Ultrahigh sulfur keratin-associated protein 5.6)
          Length = 129

 Score = 30.8 bits (68), Expect = 3.9
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -1

Query: 405 SCCHPCYCALQNHFRWQEGSGTCEARCC 322
           SCC PCYC+         GS  C++ CC
Sbjct: 89  SCCKPCYCSSGC------GSSCCQSSCC 110



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>ZNF77_HUMAN (Q15935) Zinc finger protein 77 (ZNFpT1)|
          Length = 545

 Score = 30.4 bits (67), Expect = 5.1
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -1

Query: 390 CYCALQNHFRWQEGSGTCEARCCGEEAQCHGS 295
           CY + ++H R   G   C+ + CG+   C+ S
Sbjct: 307 CYSSFRDHVRTHTGEKPCQCKHCGKAFTCYSS 338


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,232,824
Number of Sequences: 219361
Number of extensions: 1142802
Number of successful extensions: 3403
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3396
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6598423128
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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