ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags10b24
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_479461.1| Oryza sativa (japonica cultivar-group), mRNA 96 2e-16
2dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 96 2e-16
3dbj|AP004300.3| Oryza sativa (japonica cultivar-group) genomic D... 96 2e-16
4dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 88 5e-14
5dbj|AP005829.3| Oryza sativa (japonica cultivar-group) genomic D... 88 5e-14
6gb|AC158791.4| Mus musculus chromosome 1, clone RP23-247C6, comp... 44 0.63
7gb|AC109240.30| Mus musculus chromosome 1, clone RP23-445I23, co... 44 0.63
8gb|AC152832.3| Ornithorhynchus anatinus BAC clone OABb-104A1 fro... 44 0.63
9gb|AC102303.10| Mus musculus chromosome 1, clone RP24-403I11, co... 42 2.5
10gb|AC102616.7| Mus musculus chromosome 18, clone RP23-425L21, co... 42 2.5
11gb|AC168306.7| Mus musculus chromosome 18, clone RP23-225N9, com... 42 2.5
12gb|AC123044.4| Mus musculus BAC clone RP24-548B7 from chromosome... 42 2.5
13gb|AC006398.2| Homo sapiens BAC clone CTA-348C20 from 7, complet... 42 2.5
14gb|AC092758.3| Papio anubis clone RP41-22J16, complete sequence 42 2.5
15gb|AC091621.4| Papio anubis clone RP41-57J19, complete sequence 42 2.5
16gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome 42 2.5
17gb|AC141896.5| Mus musculus BAC clone RP23-238B2 from 5, complet... 42 2.5
18gb|AC105065.13| Mus musculus chromosome 18, clone RP24-459E1, co... 42 2.5
19emb|AL732563.5| Mouse DNA sequence from clone RP23-209M8 on chro... 42 2.5
20gb|AY292496.1| Micromesistius poutassou pantophysin (Pan I) gene... 40 9.9
21gb|AC183625.3| Pan troglodytes BAC clone CH251-12B21 from chromo... 40 9.9
22gb|AC115116.6| Mus musculus BAC clone RP23-62I3 from chromosome ... 40 9.9
23ref|XM_986587.1| PREDICTED: Mus musculus OHCU decarboxylase (Ura... 40 9.9
24ref|XM_989735.1| PREDICTED: Mus musculus OHCU decarboxylase (Ura... 40 9.9
25ref|XM_974784.1| PREDICTED: Mus musculus OHCU decarboxylase (Ura... 40 9.9
26gb|AC124705.4| Mus musculus BAC clone RP24-68G21 from chromosome... 40 9.9
27gb|AC127549.3| Mus musculus BAC clone RP24-510G5 from chromosome... 40 9.9
28gb|AC117638.13| Mus musculus, clone RP23-225L9, complete sequence 40 9.9
29emb|AL161774.49| Human DNA sequence from clone RP11-245B11 on ch... 40 9.9
30emb|AL136080.6| Human DNA sequence from clone RP11-448E12 on chr... 40 9.9
31gb|AC124157.4| Equus caballus clone CH241-37P10, complete sequence 40 9.9
32ref|XM_783975.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 9.9
33emb|CR628337.1| Legionella pneumophila str. Lens complete genome 40 9.9
34emb|AL161576.2|ATCHRIV72 Arabidopsis thaliana DNA chromosome 4, ... 40 9.9
35emb|AL050352.1|ATF27B13 Arabidopsis thaliana DNA chromosome 4, B... 40 9.9
36emb|AL078464.1|ATF6G3 Arabidopsis thaliana DNA chromosome 4, BAC... 40 9.9
37gb|AC121765.2| Homo sapiens chromosome 3 clone RP11-767D18, comp... 40 9.9
38gb|AC108935.5| Homo sapiens BAC clone RP11-503L19 from 4, comple... 40 9.9
39gb|AC105100.5| Homo sapiens, clone RP11-448D22, complete sequence 40 9.9
40gb|AC107983.3| Homo sapiens chromosome 17, clone CTD-2303H24, co... 40 9.9
41ref|NM_001039678.1| Mus musculus OHCU decarboxylase (Urad), mRNA 40 9.9
42ref|NM_182568.2| Homo sapiens hypothetical protein FLJ36492 (FLJ... 40 9.9
43ref|XM_930399.1| PREDICTED: Homo sapiens KIAA0565 gene product, ... 40 9.9
44gb|AC013477.7| Homo sapiens BAC clone RP11-559F19 from 4, comple... 40 9.9
45gb|AC010677.4| Homo sapiens chromosome 7 clone CTD-2304L4, compl... 40 9.9
46gb|AC098850.2| Homo sapiens chromosome 17, clone RP11-92B11, com... 40 9.9
47gb|AF375593.1|AF375593 Mus musculus stereocilin (Strc) mRNA, com... 40 9.9
48gb|DQ225767.1| Mus musculus OHCU decarboxylase (Urad) mRNA, comp... 40 9.9
49gb|AC161756.3| Mus musculus BAC clone RP24-106J5 from chromosome... 40 9.9
50gb|AC118231.9| Mus musculus chromosome 5, clone RP23-462J24, com... 40 9.9
51tpg|BK001591.1| TPA: TPA_exp: Homo sapiens chromosome 17 proxima... 40 9.9
52tpg|BK001590.1| TPA: TPA_exp: Homo sapiens chromosome 17 middle ... 40 9.9
53tpg|BK001589.1| TPA: TPA_exp: Homo sapiens chromosome 17 distal ... 40 9.9
54dbj|AK089408.1| Mus musculus B6-derived CD11 +ve dendritic cells... 40 9.9
55gb|AC171739.3| Cavia porcellus clone CH234-497P15, complete sequ... 40 9.9
56gb|AC126352.6| Homo sapiens chromosome 17, clone CTD-2509K7, com... 40 9.9
57gb|AC015818.32| Homo sapiens chromosome 17, clone RP11-434D2, co... 40 9.9
58gb|AC134025.2| Homo sapiens 3 BAC RP11-231I13 (Roswell Park Canc... 40 9.9
59gb|AC022596.9|AC022596 Homo sapiens chromosome 17, clone RP11-21... 40 9.9
60ref|NM_183158.1| Mus musculus hypothetical protein F730023N20 (F... 40 9.9
61emb|BX647826.1|HSM807972 Homo sapiens mRNA; cDNA DKFZp686G1086 (... 40 9.9
62emb|X83614.1|ATBRPK A.thaliana BRPK gene 40 9.9
63emb|AJ332314.1|HSA332314 Homo sapiens genomic sequence surroundi... 40 9.9
64gb|AC154526.2| Mus musculus BAC clone RP24-69I14 from 16, comple... 40 9.9
65emb|AL845466.4| Mouse DNA sequence from clone RP23-433P19 on chr... 40 9.9
66ref|NM_080459.1| Mus musculus stereocilin (Strc), mRNA 40 9.9
67gb|AC150897.2| Mus musculus BAC clone RP23-289F7 from 7, complet... 40 9.9
68emb|BX001020.6| Mouse DNA sequence from clone RP23-167B1 on chro... 40 9.9
69gb|DP000020.1| Equus caballus target 1 genomic scaffold 40 9.9
70emb|AL626782.10| Mouse DNA sequence from clone RP23-335N15 on ch... 40 9.9 
>ref|XM_479461.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1656

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 114/136 (83%)
 Strand = Plus / Minus

                                                                        
Query: 578  ttttatctgtatgaagactcccaacaagcatagaatatagagtatcatctggagtcaatc 637
            ||||||| || ||||| ||||| |||||   |||||| |||| ||||||||| |||||||
Sbjct: 1627 ttttatccgtgtgaaggctccctacaagtgcagaatacagagcatcatctggggtcaatc 1568

                                                                        
Query: 638  cagctgccaacatattgtcataaaactggaaggcctcctctgatctcccttcctttgcta 697
            || || ||| ||||||||| || |||||||| |||||||||||||| |||||||| || |
Sbjct: 1567 catctcccagcatattgtcgtacaactggaatgcctcctctgatcttccttccttggcca 1508

                            
Query: 698  gacctgatataagagc 713
            | || ||||| |||||
Sbjct: 1507 ggccggatatcagagc 1492
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 114/136 (83%)
 Strand = Plus / Plus

                                                                            
Query: 578      ttttatctgtatgaagactcccaacaagcatagaatatagagtatcatctggagtcaatc 637
                ||||||| || ||||| ||||| |||||   |||||| |||| ||||||||| |||||||
Sbjct: 28319819 ttttatccgtgtgaaggctccctacaagtgcagaatacagagcatcatctggggtcaatc 28319878

                                                                            
Query: 638      cagctgccaacatattgtcataaaactggaaggcctcctctgatctcccttcctttgcta 697
                || || ||| ||||||||| || |||||||| |||||||||||||| |||||||| || |
Sbjct: 28319879 catctcccagcatattgtcgtacaactggaatgcctcctctgatcttccttccttggcca 28319938

                                
Query: 698      gacctgatataagagc 713
                | || ||||| |||||
Sbjct: 28319939 ggccggatatcagagc 28319954
to top
>dbj|AP004300.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0470D12
          Length = 157248

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 114/136 (83%)
 Strand = Plus / Plus

                                                                         
Query: 578   ttttatctgtatgaagactcccaacaagcatagaatatagagtatcatctggagtcaatc 637
             ||||||| || ||||| ||||| |||||   |||||| |||| ||||||||| |||||||
Sbjct: 45382 ttttatccgtgtgaaggctccctacaagtgcagaatacagagcatcatctggggtcaatc 45441

                                                                         
Query: 638   cagctgccaacatattgtcataaaactggaaggcctcctctgatctcccttcctttgcta 697
             || || ||| ||||||||| || |||||||| |||||||||||||| |||||||| || |
Sbjct: 45442 catctcccagcatattgtcgtacaactggaatgcctcctctgatcttccttccttggcca 45501

                             
Query: 698   gacctgatataagagc 713
             | || ||||| |||||
Sbjct: 45502 ggccggatatcagagc 45517
to top
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 87.7 bits (44), Expect = 5e-14
 Identities = 86/100 (86%)
 Strand = Plus / Plus

                                                                           
Query: 617     gagtatcatctggagtcaatccagctgccaacatattgtcataaaactggaaggcctcct 676
               |||| ||||||||  |||||||| || ||| |||||||||||| |||||||| |||||||
Sbjct: 5033200 gagtgtcatctgggttcaatccatctcccagcatattgtcatacaactggaatgcctcct 5033259

                                                       
Query: 677     ctgatctcccttcctttgctagacctgatataagagctgt 716
               ||||||||| |||||| | ||| || ||||| ||||||||
Sbjct: 5033260 ctgatctcctttccttggttaggccggatatcagagctgt 5033299
to top
>dbj|AP005829.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:B1008E06
          Length = 170228

 Score = 87.7 bits (44), Expect = 5e-14
 Identities = 86/100 (86%)
 Strand = Plus / Plus

                                                                         
Query: 617   gagtatcatctggagtcaatccagctgccaacatattgtcataaaactggaaggcctcct 676
             |||| ||||||||  |||||||| || ||| |||||||||||| |||||||| |||||||
Sbjct: 35317 gagtgtcatctgggttcaatccatctcccagcatattgtcatacaactggaatgcctcct 35376

                                                     
Query: 677   ctgatctcccttcctttgctagacctgatataagagctgt 716
             ||||||||| |||||| | ||| || ||||| ||||||||
Sbjct: 35377 ctgatctcctttccttggttaggccggatatcagagctgt 35416
to top
>gb|AC158791.4| Mus musculus chromosome 1, clone RP23-247C6, complete sequence
          Length = 218755

 Score = 44.1 bits (22), Expect = 0.63
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 563   ggatttcatcttttcttttatc 584
             ||||||||||||||||||||||
Sbjct: 76114 ggatttcatcttttcttttatc 76135
to top
>gb|AC109240.30| Mus musculus chromosome 1, clone RP23-445I23, complete sequence
          Length = 189545

 Score = 44.1 bits (22), Expect = 0.63
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 563   ggatttcatcttttcttttatc 584
             ||||||||||||||||||||||
Sbjct: 62089 ggatttcatcttttcttttatc 62068
to top
>gb|AC152832.3| Ornithorhynchus anatinus BAC clone OABb-104A1 from chromosome unknown,
              complete sequence
          Length = 161382

 Score = 44.1 bits (22), Expect = 0.63
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 670    gcctcctctgatctcccttcct 691
              ||||||||||||||||||||||
Sbjct: 141764 gcctcctctgatctcccttcct 141785
to top
>gb|AC102303.10| Mus musculus chromosome 1, clone RP24-403I11, complete sequence
          Length = 162813

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 54     gattttacacatccattttct 74
              |||||||||||||||||||||
Sbjct: 124229 gattttacacatccattttct 124249
to top
>gb|AC102616.7| Mus musculus chromosome 18, clone RP23-425L21, complete sequence
          Length = 192276

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 56     ttttacacatccattttcttc 76
              |||||||||||||||||||||
Sbjct: 183457 ttttacacatccattttcttc 183437
to top
>gb|AC168306.7| Mus musculus chromosome 18, clone RP23-225N9, complete sequence
          Length = 198815

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 56    ttttacacatccattttcttc 76
             |||||||||||||||||||||
Sbjct: 81685 ttttacacatccattttcttc 81705
to top
>gb|AC123044.4| Mus musculus BAC clone RP24-548B7 from chromosome 5, complete sequence
          Length = 184772

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 674    cctctgatctcccttcctttg 694
              |||||||||||||||||||||
Sbjct: 173029 cctctgatctcccttcctttg 173049
to top
>gb|AC006398.2| Homo sapiens BAC clone CTA-348C20 from 7, complete sequence
          Length = 92611

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 444  tcaccaaatcagtgttggtgt 464
            |||||||||||||||||||||
Sbjct: 9828 tcaccaaatcagtgttggtgt 9848
to top
>gb|AC092758.3| Papio anubis clone RP41-22J16, complete sequence
          Length = 171690

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 444    tcaccaaatcagtgttggtgt 464
              |||||||||||||||||||||
Sbjct: 166267 tcaccaaatcagtgttggtgt 166287
to top
>gb|AC091621.4| Papio anubis clone RP41-57J19, complete sequence
          Length = 101443

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 444   tcaccaaatcagtgttggtgt 464
             |||||||||||||||||||||
Sbjct: 26012 tcaccaaatcagtgttggtgt 26032
to top
>gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome
          Length = 3940880

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 565     atttcatcttttcttttatct 585
               |||||||||||||||||||||
Sbjct: 1177288 atttcatcttttcttttatct 1177268
to top
>gb|AC141896.5| Mus musculus BAC clone RP23-238B2 from 5, complete sequence
          Length = 240890

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 674   cctctgatctcccttcctttg 694
             |||||||||||||||||||||
Sbjct: 21661 cctctgatctcccttcctttg 21681
to top
>gb|AC105065.13| Mus musculus chromosome 18, clone RP24-459E1, complete sequence
          Length = 154308

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 518    acatcagccatggacatggtg 538
              |||||||||||||||||||||
Sbjct: 127890 acatcagccatggacatggtg 127910
to top
>emb|AL732563.5| Mouse DNA sequence from clone RP23-209M8 on chromosome 4, complete
              sequence
          Length = 199818

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 159    ctgcaatagcataacaagttaacca 183
              |||||||||||||||||| ||||||
Sbjct: 167983 ctgcaatagcataacaagctaacca 168007
to top
>gb|AY292496.1| Micromesistius poutassou pantophysin (Pan I) gene, partial cds
          Length = 1835

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 177  ttaaccacagaacatcctga 196
            ||||||||||||||||||||
Sbjct: 1805 ttaaccacagaacatcctga 1824
to top
>gb|AC183625.3| Pan troglodytes BAC clone CH251-12B21 from chromosome 17, complete
            sequence
          Length = 134326

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 597  cccaacaagcatagaatata 616
            ||||||||||||||||||||
Sbjct: 8043 cccaacaagcatagaatata 8024
to top
>gb|AC115116.6| Mus musculus BAC clone RP23-62I3 from chromosome 1, complete sequence
          Length = 231896

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 547    accagcattcttcatgggat 566
              ||||||||||||||||||||
Sbjct: 136086 accagcattcttcatgggat 136105
to top
>ref|XM_986587.1| PREDICTED: Mus musculus OHCU decarboxylase (Urad), mRNA
          Length = 837

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 520 atcagccatggacatggtga 539
           ||||||||||||||||||||
Sbjct: 6   atcagccatggacatggtga 25
to top
>ref|XM_989735.1| PREDICTED: Mus musculus OHCU decarboxylase (Urad), mRNA
          Length = 1263

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 520 atcagccatggacatggtga 539
           ||||||||||||||||||||
Sbjct: 432 atcagccatggacatggtga 451
to top
>ref|XM_974784.1| PREDICTED: Mus musculus OHCU decarboxylase (Urad), mRNA
          Length = 837

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 520 atcagccatggacatggtga 539
           ||||||||||||||||||||
Sbjct: 6   atcagccatggacatggtga 25
to top
>gb|AC124705.4| Mus musculus BAC clone RP24-68G21 from chromosome 14, complete sequence
          Length = 175961

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                         
Query: 24     taaatactctgaatnaatcctttggtt 50
              |||||||||||||| | ||||||||||
Sbjct: 149741 taaatactctgaattagtcctttggtt 149767
to top
>gb|AC127549.3| Mus musculus BAC clone RP24-510G5 from chromosome 5, complete sequence
          Length = 152564

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 520   atcagccatggacatggtga 539
             ||||||||||||||||||||
Sbjct: 58563 atcagccatggacatggtga 58582
to top
>gb|AC117638.13| Mus musculus, clone RP23-225L9, complete sequence
          Length = 184477

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                         
Query: 24     taaatactctgaatnaatcctttggtt 50
              |||||||||||||| | ||||||||||
Sbjct: 117183 taaatactctgaattagtcctttggtt 117209
to top
>emb|AL161774.49| Human DNA sequence from clone RP11-245B11 on chromosome 13 Contains the
             5' end of the gene for RAS p21 protein activator (GTPase
             activating protein) 3 (Ins(1,3,4,5)P4-binding protein)
             (GAP1IP4BP), a novel gene and 20 CpG islands, complete
             sequence
          Length = 162296

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 334   gcaagaacagagaacacaaa 353
             ||||||||||||||||||||
Sbjct: 58746 gcaagaacagagaacacaaa 58765
to top
>emb|AL136080.6| Human DNA sequence from clone RP11-448E12 on chromosome Xq22.1-23
             Contains part of the COL4A6 gene for collagen type IV
             alpha 6, complete sequence
          Length = 116106

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 453   cagtgttggtgtcagccttt 472
             ||||||||||||||||||||
Sbjct: 13238 cagtgttggtgtcagccttt 13257
to top
>gb|AC124157.4| Equus caballus clone CH241-37P10, complete sequence
          Length = 193986

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 97     gtatggtattacaagcataataag 120
              ||||||||||||||||| ||||||
Sbjct: 155262 gtatggtattacaagcagaataag 155239
to top
>ref|XM_783975.1| PREDICTED: Strongylocentrotus purpuratus similar to polymerase
            (DNA-directed), alpha (LOC584095), mRNA
          Length = 3819

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 679  gatctcccttcctttgctag 698
            ||||||||||||||||||||
Sbjct: 2391 gatctcccttcctttgctag 2372
to top
>emb|CR628337.1| Legionella pneumophila str. Lens complete genome
          Length = 3345687

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 573    ttttcttttatctgtatgaa 592
              ||||||||||||||||||||
Sbjct: 664798 ttttcttttatctgtatgaa 664817
to top
>emb|AL161576.2|ATCHRIV72 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 72
          Length = 198924

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 394  catgatgtcgacctccatgt 413
            ||||||||||||||||||||
Sbjct: 9767 catgatgtcgacctccatgt 9786
to top
>emb|AL050352.1|ATF27B13 Arabidopsis thaliana DNA chromosome 4, BAC clone F27B13 (ESSA project)
          Length = 98401

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 394   catgatgtcgacctccatgt 413
             ||||||||||||||||||||
Sbjct: 94694 catgatgtcgacctccatgt 94713
to top
>emb|AL078464.1|ATF6G3 Arabidopsis thaliana DNA chromosome 4, BAC clone F6G3 (ESSA project)
          Length = 93953

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 394  catgatgtcgacctccatgt 413
            ||||||||||||||||||||
Sbjct: 6938 catgatgtcgacctccatgt 6957
to top
>gb|AC121765.2| Homo sapiens chromosome 3 clone RP11-767D18, complete sequence
          Length = 194455

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 564   gatttcatcttttcttttat 583
             ||||||||||||||||||||
Sbjct: 10998 gatttcatcttttcttttat 10979
to top
>gb|AC108935.5| Homo sapiens BAC clone RP11-503L19 from 4, complete sequence
          Length = 133531

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 673   tcctctgatctcccttcctttgct 696
             |||||| |||||||||||||||||
Sbjct: 91725 tcctctaatctcccttcctttgct 91702
to top
>gb|AC105100.5| Homo sapiens, clone RP11-448D22, complete sequence
          Length = 167889

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 597    cccaacaagcatagaatata 616
              ||||||||||||||||||||
Sbjct: 130129 cccaacaagcatagaatata 130148
to top
>gb|AC107983.3| Homo sapiens chromosome 17, clone CTD-2303H24, complete sequence
          Length = 130561

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 597   cccaacaagcatagaatata 616
             ||||||||||||||||||||
Sbjct: 75814 cccaacaagcatagaatata 75795
to top
>ref|NM_001039678.1| Mus musculus OHCU decarboxylase (Urad), mRNA
          Length = 688

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 520 atcagccatggacatggtga 539
           ||||||||||||||||||||
Sbjct: 3   atcagccatggacatggtga 22
to top
>ref|NM_182568.2| Homo sapiens hypothetical protein FLJ36492 (FLJ36492), mRNA
          Length = 8704

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 597  cccaacaagcatagaatata 616
            ||||||||||||||||||||
Sbjct: 8196 cccaacaagcatagaatata 8215
to top
>ref|XM_930399.1| PREDICTED: Homo sapiens KIAA0565 gene product, transcript variant 1
            (KIAA0565), mRNA
          Length = 8758

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 597  cccaacaagcatagaatata 616
            ||||||||||||||||||||
Sbjct: 8182 cccaacaagcatagaatata 8201
to top
>gb|AC013477.7| Homo sapiens BAC clone RP11-559F19 from 4, complete sequence
          Length = 182092

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 53    cgattttacacatccatttt 72
             ||||||||||||||||||||
Sbjct: 48619 cgattttacacatccatttt 48600
to top
>gb|AC010677.4| Homo sapiens chromosome 7 clone CTD-2304L4, complete sequence
          Length = 112659

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 674    cctctgatctcccttccttt 693
              ||||||||||||||||||||
Sbjct: 110807 cctctgatctcccttccttt 110788
to top
>gb|AC098850.2| Homo sapiens chromosome 17, clone RP11-92B11, complete sequence
          Length = 178965

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 597    cccaacaagcatagaatata 616
              ||||||||||||||||||||
Sbjct: 153648 cccaacaagcatagaatata 153667
to top
>gb|AF375593.1|AF375593 Mus musculus stereocilin (Strc) mRNA, complete cds
          Length = 5852

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 67   cattttcttccagagaaact 86
            ||||||||||||||||||||
Sbjct: 3702 cattttcttccagagaaact 3683
to top
>gb|DQ225767.1| Mus musculus OHCU decarboxylase (Urad) mRNA, complete cds
          Length = 688

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 520 atcagccatggacatggtga 539
           ||||||||||||||||||||
Sbjct: 3   atcagccatggacatggtga 22
to top
>gb|AC161756.3| Mus musculus BAC clone RP24-106J5 from chromosome 16, complete sequence
          Length = 219500

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 67     cattttcttccagagaaact 86
              ||||||||||||||||||||
Sbjct: 206006 cattttcttccagagaaact 206025
to top
>gb|AC118231.9| Mus musculus chromosome 5, clone RP23-462J24, complete sequence
          Length = 186083

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 567    ttcatcttttcttttatctgtatg 590
              ||||||||||||||||||| ||||
Sbjct: 127372 ttcatcttttcttttatctctatg 127349
to top
>tpg|BK001591.1| TPA: TPA_exp: Homo sapiens chromosome 17 proximal SMS-REP low-copy
             repeat, genomic sequence
          Length = 255901

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 597   cccaacaagcatagaatata 616
             ||||||||||||||||||||
Sbjct: 87110 cccaacaagcatagaatata 87129
to top
>tpg|BK001590.1| TPA: TPA_exp: Homo sapiens chromosome 17 middle SMS-REP low-copy repeat,
              genomic sequence
          Length = 240806

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 597    cccaacaagcatagaatata 616
              ||||||||||||||||||||
Sbjct: 153209 cccaacaagcatagaatata 153190
to top
>tpg|BK001589.1| TPA: TPA_exp: Homo sapiens chromosome 17 distal SMS-REP low-copy
             repeat, genomic sequence
          Length = 176482

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 597   cccaacaagcatagaatata 616
             ||||||||||||||||||||
Sbjct: 89691 cccaacaagcatagaatata 89710
to top
>dbj|AK089408.1| Mus musculus B6-derived CD11 +ve dendritic cells cDNA, RIKEN
            full-length enriched library, clone:F730023N20
            product:hypothetical Cytochrome P450 structure containing
            protein, full insert sequence
          Length = 2738

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 67   cattttcttccagagaaact 86
            ||||||||||||||||||||
Sbjct: 2335 cattttcttccagagaaact 2354
to top
>gb|AC171739.3| Cavia porcellus clone CH234-497P15, complete sequence
          Length = 158596

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 564   gatttcatcttttcttttat 583
             ||||||||||||||||||||
Sbjct: 22609 gatttcatcttttcttttat 22628
to top
>gb|AC126352.6| Homo sapiens chromosome 17, clone CTD-2509K7, complete sequence
          Length = 211403

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 597   cccaacaagcatagaatata 616
             ||||||||||||||||||||
Sbjct: 89382 cccaacaagcatagaatata 89363
to top
>gb|AC015818.32| Homo sapiens chromosome 17, clone RP11-434D2, complete sequence
          Length = 194767

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 597   cccaacaagcatagaatata 616
             ||||||||||||||||||||
Sbjct: 21966 cccaacaagcatagaatata 21985
to top
>gb|AC134025.2| Homo sapiens 3 BAC RP11-231I13 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 183111

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 564    gatttcatcttttcttttat 583
              ||||||||||||||||||||
Sbjct: 160439 gatttcatcttttcttttat 160458
to top
>gb|AC022596.9|AC022596 Homo sapiens chromosome 17, clone RP11-219A15, complete sequence
          Length = 192337

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 597   cccaacaagcatagaatata 616
             ||||||||||||||||||||
Sbjct: 97403 cccaacaagcatagaatata 97384
to top
>ref|NM_183158.1| Mus musculus hypothetical protein F730023N20 (F730023N20), mRNA
          Length = 2738

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 67   cattttcttccagagaaact 86
            ||||||||||||||||||||
Sbjct: 2335 cattttcttccagagaaact 2354
to top
>emb|BX647826.1|HSM807972 Homo sapiens mRNA; cDNA DKFZp686G1086 (from clone DKFZp686G1086)
          Length = 8704

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 597  cccaacaagcatagaatata 616
            ||||||||||||||||||||
Sbjct: 8196 cccaacaagcatagaatata 8215
to top
>emb|X83614.1|ATBRPK A.thaliana BRPK gene
          Length = 6059

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 394  catgatgtcgacctccatgt 413
            ||||||||||||||||||||
Sbjct: 1767 catgatgtcgacctccatgt 1748
to top
>emb|AJ332314.1|HSA332314 Homo sapiens genomic sequence surrounding NotI site, clone
           NL6-LP10R
          Length = 486

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 464 tcagcctttcagcagtcctg 483
           ||||||||||||||||||||
Sbjct: 167 tcagcctttcagcagtcctg 148
to top
>gb|AC154526.2| Mus musculus BAC clone RP24-69I14 from 16, complete sequence
          Length = 219420

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 67    cattttcttccagagaaact 86
             ||||||||||||||||||||
Sbjct: 85092 cattttcttccagagaaact 85111
to top
>emb|AL845466.4| Mouse DNA sequence from clone RP23-433P19 on chromosome 2, complete
             sequence
          Length = 197839

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 67    cattttcttccagagaaact 86
             ||||||||||||||||||||
Sbjct: 78413 cattttcttccagagaaact 78432
to top
>ref|NM_080459.1| Mus musculus stereocilin (Strc), mRNA
          Length = 5852

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 67   cattttcttccagagaaact 86
            ||||||||||||||||||||
Sbjct: 3702 cattttcttccagagaaact 3683
to top
>gb|AC150897.2| Mus musculus BAC clone RP23-289F7 from 7, complete sequence
          Length = 227073

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 54     gattttacacatccattttc 73
              ||||||||||||||||||||
Sbjct: 139801 gattttacacatccattttc 139820
to top
>emb|BX001020.6| Mouse DNA sequence from clone RP23-167B1 on chromosome 4, complete
             sequence
          Length = 74555

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 590   gaagactcccaacaagcatagaatatag 617
             ||||||||||||||| ||||||| ||||
Sbjct: 46969 gaagactcccaacaaacatagaaaatag 46996
to top
>gb|DP000020.1| Equus caballus target 1 genomic scaffold
          Length = 1907055

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 97     gtatggtattacaagcataataag 120
              ||||||||||||||||| ||||||
Sbjct: 988265 gtatggtattacaagcagaataag 988242
to top
>emb|AL626782.10| Mouse DNA sequence from clone RP23-335N15 on chromosome X, complete
              sequence
          Length = 177264

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 54     gattttacacatccattttc 73
              ||||||||||||||||||||
Sbjct: 139595 gattttacacatccattttc 139614


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,831,458
Number of Sequences: 3902068
Number of extensions: 6831458
Number of successful extensions: 125231
Number of sequences better than 10.0: 70
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 124930
Number of HSP's gapped (non-prelim): 301
length of query: 722
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 699
effective length of database: 17,143,297,704
effective search space: 11983165095096
effective search space used: 11983165095096
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top