ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags10b13
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY104752.1| Zea mays PCO127123 mRNA sequence 190 4e-45
2ref|XM_466799.1| Oryza sativa (japonica cultivar-group), mRNA 167 6e-38
3dbj|AK066386.1| Oryza sativa (japonica cultivar-group) cDNA clon... 167 6e-38
4dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 98 5e-17
5dbj|AP004059.3| Oryza sativa (japonica cultivar-group) genomic D... 98 5e-17
6dbj|AP004053.3| Oryza sativa (japonica cultivar-group) genomic D... 98 5e-17
7ref|XM_473150.1| Oryza sativa (japonica cultivar-group), predic... 84 7e-13
8ref|XM_468372.1| Oryza sativa (japonica cultivar-group), mRNA 64 7e-07
9dbj|AK104915.1| Oryza sativa (japonica cultivar-group) cDNA clon... 64 7e-07
10dbj|AK068166.1| Oryza sativa (japonica cultivar-group) cDNA clon... 64 7e-07
11emb|AL606622.3|OSJN00059 Oryza sativa genomic DNA, chromosome 4,... 56 2e-04
12dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 56 2e-04
13dbj|AP005691.3| Oryza sativa (japonica cultivar-group) genomic D... 56 2e-04
14dbj|AP004120.3| Oryza sativa (japonica cultivar-group) genomic D... 56 2e-04
15gb|AY108740.1| Zea mays PCO118291 mRNA sequence 56 2e-04
16ref|NM_100101.2| Arabidopsis thaliana CER1 (ECERIFERUM 1) AT1G02... 48 0.040
17dbj|D64155.1|ATHCER1 Arabidopsis thaliana CER1 mRNA for possible... 48 0.040
18gb|U40489.1|ATU40489 Arabidopsis thaliana gl1 homolog mRNA, comp... 48 0.040
19emb|AL035405.13|HS21O18 Human DNA sequence from clone RP1-21O18 ... 42 2.4
20emb|CR382130.1| Yarrowia lipolytica chromosome D of strain CLIB1... 42 2.4
21gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome 40 9.7
22ref|NM_202013.1| Arabidopsis thaliana catalytic AT1G02190 transc... 40 9.7
23ref|NM_100099.3| Arabidopsis thaliana catalytic AT1G02190 transc... 40 9.7
24ref|XM_465826.1| Oryza sativa (japonica cultivar-group), mRNA 40 9.7
25gb|AC102105.8| Mus musculus chromosome 12, clone RP23-89G24, com... 40 9.7
26gb|AC144806.10| Medicago truncatula clone mth2-34h22, complete s... 40 9.7
27gb|AC144635.2| Xenopus tropicalis BAC clone ISB1-382M24 containi... 40 9.7
28gb|AF142632.1|AF142632 Xenopus laevis cysteine-rich domain neure... 40 9.7
29gb|BT005719.1| Arabidopsis thaliana clone RAFL15-13-B05 (R20718)... 40 9.7
30dbj|AP005630.3| Oryza sativa (japonica cultivar-group) genomic D... 40 9.7
31emb|X95965.1|ATCER1L19 A.thaliana CER1-like gene (1992bp) 40 9.7
32gb|AC099715.9| Mus musculus chromosome 10, clone RP23-346B18, co... 40 9.7
33gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 40 9.7 
>gb|AY104752.1| Zea mays PCO127123 mRNA sequence
          Length = 2262

 Score =  190 bits (96), Expect = 4e-45
 Identities = 270/328 (82%)
 Strand = Plus / Minus

                                                                        
Query: 159  gctttcgtgagagggacaaagccgtgcctgatagcggccgaccatgctttctcagagtcc 218
            |||||||| | ||| || || |||||||| ||||| || ||||||||||| ||||  | |
Sbjct: 1951 gctttcgtcaaaggaacgaatccgtgcctaatagcagctgaccatgctttgtcagcatgc 1892

                                                                        
Query: 219  atcatgtcgtccccgcactcgtgcacgctccacccttccaggacatgaagtattccggcg 278
            | |||| ||||||| |||||||||||| |||||||||||||| | |||||||| ||| ||
Sbjct: 1891 accatggcgtccccacactcgtgcacggtccacccttccagggcgtgaagtatcccgccg 1832

                                                                        
Query: 279  atatgccacgcgctcatcacccttctcggcaaccagttctcgcaggagtggatgttctgc 338
            ||  |||| ||||||||||||| ||| |||| ||||||||||||||  ||||| || |||
Sbjct: 1831 atgcgccaggcgctcatcacccgtcttggcagccagttctcgcaggcatggatattttgc 1772

                                                                        
Query: 339  atagtgtccgggatcttcatcgccggagtgctcaagtaagtgcagtctttgcggactttc 398
            || || || ||||||||||| || |||||||||| ||| ||||| || ||||||| ||||
Sbjct: 1771 atggtttcagggatcttcattgctggagtgctcaggtaggtgcaatccttgcggattttc 1712

                                                                        
Query: 399  ttcagggggaactgcgatattggaatgaacactgttccttttggtgccatcctctgttct 458
            || | ||||||||| || ||||| | ||| || | |||||| ||||||||| ||||||| 
Sbjct: 1711 ttgatggggaactgtgagattgggacgaatacggctcctttcggtgccatcttctgttcc 1652

                                        
Query: 459  ttgtcctccatcctctctactaaccaaa 486
            | ||| || || || ||||||| |||||
Sbjct: 1651 tcgtcgtcgatgctgtctactagccaaa 1624



 Score = 40.1 bits (20), Expect = 9.7
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                        
Query: 519  tagcttgctctgttctctggcatctgtgacttgagcatgtcata 562
            ||||||||| || | ||||  ||||||||||||||||| |||||
Sbjct: 1585 tagcttgctttgctatctgcaatctgtgacttgagcatatcata 1542
to top
>ref|XM_466799.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2481

 Score =  167 bits (84), Expect = 6e-38
 Identities = 210/252 (83%)
 Strand = Plus / Minus

                                                                        
Query: 198  gaccatgctttctcagagtccatcatgtcgtccccgcactcgtgcacgctccacccttcc 257
            ||||||| |||||||   |||||||| || ||||| |||||||||| | |||| ||||||
Sbjct: 1925 gaccatgatttctcaatatccatcatctcatccccacactcgtgcatgttccatccttcc 1866

                                                                        
Query: 258  aggacatgaagtattccggcgatatgccacgcgctcatcacccttctcggcaaccagttc 317
            ||  ||||||||||||| || || ||||| || |||||||||||||| || | ||| |||
Sbjct: 1865 agagcatgaagtattccagcaatgtgccaagcactcatcacccttcttggaagccaattc 1806

                                                                        
Query: 318  tcgcaggagtggatgttctgcatagtgtccgggatcttcatcgccggagtgctcaagtaa 377
            |||||||||||||| |||| |||    ||||||||| |||| || || ||||||| ||||
Sbjct: 1805 tcgcaggagtggatattcttcatttcctccgggatcctcattgctggggtgctcatgtaa 1746

                                                                        
Query: 378  gtgcagtctttgcggactttcttcagggggaactgcgatattggaatgaacactgttcct 437
            |||||||| ||||| | |||||| ||||||||||| ||||| ||||| || | |||||||
Sbjct: 1745 gtgcagtccttgcgaagtttcttaagggggaactgtgatatgggaataaaaattgttcct 1686

                        
Query: 438  tttggtgccatc 449
            ||||| ||||||
Sbjct: 1685 tttggcgccatc 1674



 Score =  111 bits (56), Expect = 3e-21
 Identities = 146/176 (82%)
 Strand = Plus / Minus

                                                                        
Query: 513  ttcaagtagcttgctctgttctctggcatctgtgacttgagcatgtcatactctttctta 572
            ||||| |||||||| ||||||||||| || ||||||||||||||||  ||  | | ||| 
Sbjct: 1610 ttcaaatagcttgccctgttctctggtatttgtgacttgagcatgtggtatacctccttt 1551

                                                                        
Query: 573  cgattcatgatcacctggatgcccttgccacataatgccatagcaacggcacgggctacc 632
              |||||||||||||||||  ||  || |||||| ||| || |||| |||||| |||| |
Sbjct: 1550 tcattcatgatcacctggacacctctgtcacatagtgcaatggcaatggcacgagctatc 1491

                                                                    
Query: 633  ttagaagtccctgtatgaaggaaaacttgctttgcatctgaagggatgctttttag 688
            |||||||| |||||| |||| ||||||| ||||||||||||||| || ||||||||
Sbjct: 1490 ttagaagtgcctgtacgaagaaaaactttctttgcatctgaaggaatactttttag 1435
to top
>dbj|AK066386.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013066F17, full
            insert sequence
          Length = 2481

 Score =  167 bits (84), Expect = 6e-38
 Identities = 210/252 (83%)
 Strand = Plus / Minus

                                                                        
Query: 198  gaccatgctttctcagagtccatcatgtcgtccccgcactcgtgcacgctccacccttcc 257
            ||||||| |||||||   |||||||| || ||||| |||||||||| | |||| ||||||
Sbjct: 1925 gaccatgatttctcaatatccatcatctcatccccacactcgtgcatgttccatccttcc 1866

                                                                        
Query: 258  aggacatgaagtattccggcgatatgccacgcgctcatcacccttctcggcaaccagttc 317
            ||  ||||||||||||| || || ||||| || |||||||||||||| || | ||| |||
Sbjct: 1865 agagcatgaagtattccagcaatgtgccaagcactcatcacccttcttggaagccaattc 1806

                                                                        
Query: 318  tcgcaggagtggatgttctgcatagtgtccgggatcttcatcgccggagtgctcaagtaa 377
            |||||||||||||| |||| |||    ||||||||| |||| || || ||||||| ||||
Sbjct: 1805 tcgcaggagtggatattcttcatttcctccgggatcctcattgctggggtgctcatgtaa 1746

                                                                        
Query: 378  gtgcagtctttgcggactttcttcagggggaactgcgatattggaatgaacactgttcct 437
            |||||||| ||||| | |||||| ||||||||||| ||||| ||||| || | |||||||
Sbjct: 1745 gtgcagtccttgcgaagtttcttaagggggaactgtgatatgggaataaaaattgttcct 1686

                        
Query: 438  tttggtgccatc 449
            ||||| ||||||
Sbjct: 1685 tttggcgccatc 1674



 Score =  111 bits (56), Expect = 3e-21
 Identities = 146/176 (82%)
 Strand = Plus / Minus

                                                                        
Query: 513  ttcaagtagcttgctctgttctctggcatctgtgacttgagcatgtcatactctttctta 572
            ||||| |||||||| ||||||||||| || ||||||||||||||||  ||  | | ||| 
Sbjct: 1610 ttcaaatagcttgccctgttctctggtatttgtgacttgagcatgtggtatacctccttt 1551

                                                                        
Query: 573  cgattcatgatcacctggatgcccttgccacataatgccatagcaacggcacgggctacc 632
              |||||||||||||||||  ||  || |||||| ||| || |||| |||||| |||| |
Sbjct: 1550 tcattcatgatcacctggacacctctgtcacatagtgcaatggcaatggcacgagctatc 1491

                                                                    
Query: 633  ttagaagtccctgtatgaaggaaaacttgctttgcatctgaagggatgctttttag 688
            |||||||| |||||| |||| ||||||| ||||||||||||||| || ||||||||
Sbjct: 1490 ttagaagtgcctgtacgaagaaaaactttctttgcatctgaaggaatactttttag 1435
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 97.6 bits (49), Expect = 5e-17
 Identities = 112/133 (84%)
 Strand = Plus / Plus

                                                                            
Query: 317      ctcgcaggagtggatgttctgcatagtgtccgggatcttcatcgccggagtgctcaagta 376
                ||||||||||||||| |||| |||    ||||||||| |||| || || ||||||| |||
Sbjct: 24738205 ctcgcaggagtggatattcttcatttcctccgggatcctcattgctggggtgctcatgta 24738264

                                                                            
Query: 377      agtgcagtctttgcggactttcttcagggggaactgcgatattggaatgaacactgttcc 436
                ||||||||| ||||| | |||||| ||||||||||| ||||| ||||| || | ||||||
Sbjct: 24738265 agtgcagtccttgcgaagtttcttaagggggaactgtgatatgggaataaaaattgttcc 24738324

                             
Query: 437      ttttggtgccatc 449
                |||||| ||||||
Sbjct: 24738325 ttttggcgccatc 24738337



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 76/88 (86%)
 Strand = Plus / Plus

                                                                            
Query: 601      cacataatgccatagcaacggcacgggctaccttagaagtccctgtatgaaggaaaactt 660
                |||||| ||| || |||| |||||| |||| ||||||||| |||||| |||| |||||||
Sbjct: 24738752 cacatagtgcaatggcaatggcacgagctatcttagaagtgcctgtacgaagaaaaactt 24738811

                                            
Query: 661      gctttgcatctgaagggatgctttttag 688
                 ||||||||||||||| || ||||||||
Sbjct: 24738812 tctttgcatctgaaggaatactttttag 24738839



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 90/107 (84%)
 Strand = Plus / Plus

                                                                            
Query: 198      gaccatgctttctcagagtccatcatgtcgtccccgcactcgtgcacgctccacccttcc 257
                ||||||| |||||||   |||||||| || ||||| |||||||||| | |||| ||||||
Sbjct: 24737996 gaccatgatttctcaatatccatcatctcatccccacactcgtgcatgttccatccttcc 24738055

                                                               
Query: 258      aggacatgaagtattccggcgatatgccacgcgctcatcacccttct 304
                ||  ||||||||||||| || || ||||| || ||||||||||||||
Sbjct: 24738056 agagcatgaagtattccagcaatgtgccaagcactcatcacccttct 24738102



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 42/46 (91%)
 Strand = Plus / Plus

                                                              
Query: 513      ttcaagtagcttgctctgttctctggcatctgtgacttgagcatgt 558
                ||||| |||||||| ||||||||||| || ||||||||||||||||
Sbjct: 24738559 ttcaaatagcttgccctgttctctggtatttgtgacttgagcatgt 24738604



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                                    
Query: 283      gccacgcgctcatcacccttctcggcaaccagttct 318
                ||||||||||||||||||| ||||||||||| ||||
Sbjct: 34908549 gccacgcgctcatcaccctcctcggcaaccaattct 34908584



 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 603      cataatgccatagcaacggc 622
                ||||||||||||||||||||
Sbjct: 17711888 cataatgccatagcaacggc 17711907
to top
>dbj|AP004059.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1372_D06
          Length = 129242

 Score = 97.6 bits (49), Expect = 5e-17
 Identities = 112/133 (84%)
 Strand = Plus / Plus

                                                                          
Query: 317    ctcgcaggagtggatgttctgcatagtgtccgggatcttcatcgccggagtgctcaagta 376
              ||||||||||||||| |||| |||    ||||||||| |||| || || ||||||| |||
Sbjct: 119603 ctcgcaggagtggatattcttcatttcctccgggatcctcattgctggggtgctcatgta 119662

                                                                          
Query: 377    agtgcagtctttgcggactttcttcagggggaactgcgatattggaatgaacactgttcc 436
              ||||||||| ||||| | |||||| ||||||||||| ||||| ||||| || | ||||||
Sbjct: 119663 agtgcagtccttgcgaagtttcttaagggggaactgtgatatgggaataaaaattgttcc 119722

                           
Query: 437    ttttggtgccatc 449
              |||||| ||||||
Sbjct: 119723 ttttggcgccatc 119735



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 76/88 (86%)
 Strand = Plus / Plus

                                                                          
Query: 601    cacataatgccatagcaacggcacgggctaccttagaagtccctgtatgaaggaaaactt 660
              |||||| ||| || |||| |||||| |||| ||||||||| |||||| |||| |||||||
Sbjct: 120150 cacatagtgcaatggcaatggcacgagctatcttagaagtgcctgtacgaagaaaaactt 120209

                                          
Query: 661    gctttgcatctgaagggatgctttttag 688
               ||||||||||||||| || ||||||||
Sbjct: 120210 tctttgcatctgaaggaatactttttag 120237



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 90/107 (84%)
 Strand = Plus / Plus

                                                                          
Query: 198    gaccatgctttctcagagtccatcatgtcgtccccgcactcgtgcacgctccacccttcc 257
              ||||||| |||||||   |||||||| || ||||| |||||||||| | |||| ||||||
Sbjct: 119394 gaccatgatttctcaatatccatcatctcatccccacactcgtgcatgttccatccttcc 119453

                                                             
Query: 258    aggacatgaagtattccggcgatatgccacgcgctcatcacccttct 304
              ||  ||||||||||||| || || ||||| || ||||||||||||||
Sbjct: 119454 agagcatgaagtattccagcaatgtgccaagcactcatcacccttct 119500



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 42/46 (91%)
 Strand = Plus / Plus

                                                            
Query: 513    ttcaagtagcttgctctgttctctggcatctgtgacttgagcatgt 558
              ||||| |||||||| ||||||||||| || ||||||||||||||||
Sbjct: 119957 ttcaaatagcttgccctgttctctggtatttgtgacttgagcatgt 120002
to top
>dbj|AP004053.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1234_B11
          Length = 128095

 Score = 97.6 bits (49), Expect = 5e-17
 Identities = 112/133 (84%)
 Strand = Plus / Plus

                                                                         
Query: 317   ctcgcaggagtggatgttctgcatagtgtccgggatcttcatcgccggagtgctcaagta 376
             ||||||||||||||| |||| |||    ||||||||| |||| || || ||||||| |||
Sbjct: 37853 ctcgcaggagtggatattcttcatttcctccgggatcctcattgctggggtgctcatgta 37912

                                                                         
Query: 377   agtgcagtctttgcggactttcttcagggggaactgcgatattggaatgaacactgttcc 436
             ||||||||| ||||| | |||||| ||||||||||| ||||| ||||| || | ||||||
Sbjct: 37913 agtgcagtccttgcgaagtttcttaagggggaactgtgatatgggaataaaaattgttcc 37972

                          
Query: 437   ttttggtgccatc 449
             |||||| ||||||
Sbjct: 37973 ttttggcgccatc 37985



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 76/88 (86%)
 Strand = Plus / Plus

                                                                         
Query: 601   cacataatgccatagcaacggcacgggctaccttagaagtccctgtatgaaggaaaactt 660
             |||||| ||| || |||| |||||| |||| ||||||||| |||||| |||| |||||||
Sbjct: 38400 cacatagtgcaatggcaatggcacgagctatcttagaagtgcctgtacgaagaaaaactt 38459

                                         
Query: 661   gctttgcatctgaagggatgctttttag 688
              ||||||||||||||| || ||||||||
Sbjct: 38460 tctttgcatctgaaggaatactttttag 38487



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 90/107 (84%)
 Strand = Plus / Plus

                                                                         
Query: 198   gaccatgctttctcagagtccatcatgtcgtccccgcactcgtgcacgctccacccttcc 257
             ||||||| |||||||   |||||||| || ||||| |||||||||| | |||| ||||||
Sbjct: 37644 gaccatgatttctcaatatccatcatctcatccccacactcgtgcatgttccatccttcc 37703

                                                            
Query: 258   aggacatgaagtattccggcgatatgccacgcgctcatcacccttct 304
             ||  ||||||||||||| || || ||||| || ||||||||||||||
Sbjct: 37704 agagcatgaagtattccagcaatgtgccaagcactcatcacccttct 37750



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 42/46 (91%)
 Strand = Plus / Plus

                                                           
Query: 513   ttcaagtagcttgctctgttctctggcatctgtgacttgagcatgt 558
             ||||| |||||||| ||||||||||| || ||||||||||||||||
Sbjct: 38207 ttcaaatagcttgccctgttctctggtatttgtgacttgagcatgt 38252
to top
>ref|XM_473150.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1794

 Score = 83.8 bits (42), Expect = 7e-13
 Identities = 102/122 (83%)
 Strand = Plus / Minus

                                                                        
Query: 291  ctcatcacccttctcggcaaccagttctcgcaggagtggatgttctgcatagtgtccggg 350
            |||||||||||||| |||| ||| ||||| |||| |||||  |||||||| || || |||
Sbjct: 1631 ctcatcacccttcttggcagccaattctcacaggtgtggacattctgcattgtctctggg 1572

                                                                        
Query: 351  atcttcatcgccggagtgctcaagtaagtgcagtctttgcggactttcttcagggggaac 410
            |||||||| || ||  | ||||||||||||||||| |||||  | ||||| |||||||||
Sbjct: 1571 atcttcattgctgggttactcaagtaagtgcagtccttgcgtgccttcttaagggggaac 1512

              
Query: 411  tg 412
            ||
Sbjct: 1511 tg 1510
to top
>ref|XM_468372.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2219

 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 38/40 (95%)
 Strand = Plus / Minus

                                                    
Query: 283  gccacgcgctcatcacccttctcggcaaccagttctcgca 322
            ||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 1838 gccacgcgctcatcaccctcctcggcaaccaattctcgca 1799
to top
>dbj|AK104915.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-E01, full
           insert sequence
          Length = 659

 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 38/40 (95%)
 Strand = Plus / Minus

                                                   
Query: 283 gccacgcgctcatcacccttctcggcaaccagttctcgca 322
           ||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 296 gccacgcgctcatcaccctcctcggcaaccaattctcgca 257
to top
>dbj|AK068166.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013134I09, full
            insert sequence
          Length = 2219

 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 38/40 (95%)
 Strand = Plus / Minus

                                                    
Query: 283  gccacgcgctcatcacccttctcggcaaccagttctcgca 322
            ||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 1838 gccacgcgctcatcaccctcctcggcaaccaattctcgca 1799
to top
>emb|AL606622.3|OSJN00059 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0004N05,
             complete sequence
          Length = 158601

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 67/80 (83%)
 Strand = Plus / Plus

                                                                         
Query: 333   ttctgcatagtgtccgggatcttcatcgccggagtgctcaagtaagtgcagtctttgcgg 392
             |||||||| || || ||||||||||| || ||  | ||||||||||||||||| ||||| 
Sbjct: 59409 ttctgcattgtctctgggatcttcattgctgggttactcaagtaagtgcagtccttgcgt 59468

                                 
Query: 393   actttcttcagggggaactg 412
              | ||||| |||||||||||
Sbjct: 59469 gccttcttaagggggaactg 59488
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 67/80 (83%)
 Strand = Plus / Plus

                                                                            
Query: 333      ttctgcatagtgtccgggatcttcatcgccggagtgctcaagtaagtgcagtctttgcgg 392
                |||||||| || || ||||||||||| || ||  | ||||||||||||||||| ||||| 
Sbjct: 25573212 ttctgcattgtctctgggatcttcattgctgggttactcaagtaagtgcagtccttgcgt 25573271

                                    
Query: 393      actttcttcagggggaactg 412
                 | ||||| |||||||||||
Sbjct: 25573272 gccttcttaagggggaactg 25573291
to top
>dbj|AP005691.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0053L11
          Length = 147123

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                                  
Query: 283    gccacgcgctcatcacccttctcggcaaccagttct 318
              ||||||||||||||||||| ||||||||||| ||||
Sbjct: 130144 gccacgcgctcatcaccctcctcggcaaccaattct 130179
to top
>dbj|AP004120.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1293_E04
          Length = 118192

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                                 
Query: 283   gccacgcgctcatcacccttctcggcaaccagttct 318
             ||||||||||||||||||| ||||||||||| ||||
Sbjct: 68046 gccacgcgctcatcaccctcctcggcaaccaattct 68081
to top
>gb|AY108740.1| Zea mays PCO118291 mRNA sequence
          Length = 967

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 37/40 (92%)
 Strand = Plus / Minus

                                                   
Query: 283 gccacgcgctcatcacccttctcggcaaccagttctcgca 322
           ||||||||||||||||||| | ||||| ||||||||||||
Sbjct: 669 gccacgcgctcatcaccctccgcggcagccagttctcgca 630
to top
>ref|NM_100101.2| Arabidopsis thaliana CER1 (ECERIFERUM 1) AT1G02205 (CER1) transcript
            variant AT1G02205.2 mRNA, complete cds
          Length = 2202

 Score = 48.1 bits (24), Expect = 0.040
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                    
Query: 291  ctcatcacccttctcggcaaccagttctcgcaggagtgga 330
            |||||| || ||||||| ||||||||||| ||||||||||
Sbjct: 1770 ctcatcgcctttctcggtaaccagttctcacaggagtgga 1731
to top
>dbj|D64155.1|ATHCER1 Arabidopsis thaliana CER1 mRNA for possible aldehyde decarbonylase,
            complete cds
          Length = 2133

 Score = 48.1 bits (24), Expect = 0.040
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                    
Query: 291  ctcatcacccttctcggcaaccagttctcgcaggagtgga 330
            |||||| || ||||||| ||||||||||| ||||||||||
Sbjct: 1741 ctcatcgcctttctcggtaaccagttctcacaggagtgga 1702
to top
>gb|U40489.1|ATU40489 Arabidopsis thaliana gl1 homolog mRNA, complete cds
          Length = 2154

 Score = 48.1 bits (24), Expect = 0.040
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                    
Query: 291  ctcatcacccttctcggcaaccagttctcgcaggagtgga 330
            |||||| || ||||||| ||||||||||| ||||||||||
Sbjct: 1757 ctcatcgcctttctcggtaaccagttctcacaggagtgga 1718
to top
>emb|AL035405.13|HS21O18 Human DNA sequence from clone RP1-21O18 on chromosome 1p35.1-36.23
             Contains the 3' end of a novel gene (KIAA1026), gene
             FLJ23703, a novel pseudogene, the 5' end of a novel gene
             (FLJ10199), a novel gene and a CpG island, complete
             sequence
          Length = 168853

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 521   gcttgctctgttctctggcatctgt 545
             ||||||||||||||||| |||||||
Sbjct: 60384 gcttgctctgttctctgccatctgt 60408
to top
>emb|CR382130.1| Yarrowia lipolytica chromosome D of strain CLIB122 of Yarrowia lipolytica
          Length = 3633272

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 650    aaggaaaacttgctttgcatctgaa 674
              |||||||||||||||| ||||||||
Sbjct: 319927 aaggaaaacttgcttttcatctgaa 319951
to top
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome
          Length = 4109442

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 304    tcggcaaccagttctcgcag 323
              ||||||||||||||||||||
Sbjct: 920167 tcggcaaccagttctcgcag 920148
to top
>ref|NM_202013.1| Arabidopsis thaliana catalytic AT1G02190 transcript variant
            AT1G02190.2 mRNA, complete cds
          Length = 2161

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                        
Query: 291  ctcatcacccttctcggcaaccagttctcgcaggagtggatgtt 334
            ||||||||||| |||  || ||||||||| ||||||| ||||||
Sbjct: 1799 ctcatcaccctcctccccagccagttctcacaggagtcgatgtt 1756
to top
>ref|NM_100099.3| Arabidopsis thaliana catalytic AT1G02190 transcript variant
            AT1G02190.1 mRNA, complete cds
          Length = 2173

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                        
Query: 291  ctcatcacccttctcggcaaccagttctcgcaggagtggatgtt 334
            ||||||||||| |||  || ||||||||| ||||||| ||||||
Sbjct: 1811 ctcatcaccctcctccccagccagttctcacaggagtcgatgtt 1768
to top
>ref|XM_465826.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1104

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 603 cataatgccatagcaacggc 622
           ||||||||||||||||||||
Sbjct: 722 cataatgccatagcaacggc 703
to top
>gb|AC102105.8| Mus musculus chromosome 12, clone RP23-89G24, complete sequence
          Length = 188853

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 488   cttggttatgtcattgctggagca 511
             |||| |||||||||||||||||||
Sbjct: 64141 cttgattatgtcattgctggagca 64118
to top
>gb|AC144806.10| Medicago truncatula clone mth2-34h22, complete sequence
          Length = 124550

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 452    ctgttctttgtcctccatcctctc 475
              ||||||||| ||||||||||||||
Sbjct: 123784 ctgttctttatcctccatcctctc 123807
to top
>gb|AC144635.2| Xenopus tropicalis BAC clone ISB1-382M24 containing hbox10 gene,
             complete cds, complete sequence
          Length = 58053

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 526   ctctgttctctggcatctgt 545
             ||||||||||||||||||||
Sbjct: 47511 ctctgttctctggcatctgt 47492
to top
>gb|AF142632.1|AF142632 Xenopus laevis cysteine-rich domain neuregulin-1 (NRG1) mRNA,
           complete cds
          Length = 3507

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 438 tttggtgccatcctctgttc 457
           ||||||||||||||||||||
Sbjct: 901 tttggtgccatcctctgttc 920
to top
>gb|BT005719.1| Arabidopsis thaliana clone RAFL15-13-B05 (R20718) At1g02190 mRNA,
            complete sequence
          Length = 2194

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                        
Query: 291  ctcatcacccttctcggcaaccagttctcgcaggagtggatgtt 334
            ||||||||||| |||  || ||||||||| ||||||| ||||||
Sbjct: 1812 ctcatcaccctcctccccagccagttctcacaggagtcgatgtt 1769
to top
>dbj|AP005630.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBb0021C10
          Length = 119527

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 603   cataatgccatagcaacggc 622
             ||||||||||||||||||||
Sbjct: 67902 cataatgccatagcaacggc 67921
to top
>emb|X95965.1|ATCER1L19 A.thaliana CER1-like gene (1992bp)
          Length = 1992

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                        
Query: 291  ctcatcacccttctcggcaaccagttctcgcaggagtggatgtt 334
            ||||||||||| |||  || ||||||||| ||||||| ||||||
Sbjct: 1724 ctcatcaccctcctccccagccagttctcacaggagtcgatgtt 1681
to top
>gb|AC099715.9| Mus musculus chromosome 10, clone RP23-346B18, complete sequence
          Length = 206811

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 531   ttctctggcatctgtgactt 550
             ||||||||||||||||||||
Sbjct: 77228 ttctctggcatctgtgactt 77209
to top
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 185   cctgatagcggccgaccatg 204
             ||||||||||||||||||||
Sbjct: 84934 cctgatagcggccgaccatg 84915


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,140,151
Number of Sequences: 3902068
Number of extensions: 5140151
Number of successful extensions: 86825
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 86591
Number of HSP's gapped (non-prelim): 229
length of query: 705
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 682
effective length of database: 17,143,297,704
effective search space: 11691729034128
effective search space used: 11691729034128
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top