ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags10b10 |
|---|---|
| Clone Library Name | barley_pub |
>CFA_ECOLI (P0A9H7) Cyclopropane-fatty-acyl-phospholipid synthase (EC| 2.1.1.79) (Cyclopropane fatty acid synthase) (CFA synthase) Length = 381 Score = 76.3 bits (186), Expect = 6e-14 Identities = 42/96 (43%), Positives = 60/96 (62%) Frame = -3 Query: 541 FIKEYIFPGGCLPSLARIMSAMTASSRFCIEHVENIGPNYYTTLMHWRDNFMANKDQVLA 362 +I +YIFP GCLPS+ +I A ++ F +E N G +Y TTLM W + F+A ++ A Sbjct: 279 WINKYIFPNGCLPSVRQI--AQSSEPHFVMEDWHNFGADYDTTLMAWYERFLAAWPEI-A 335 Query: 361 LGFDERFLRIWEYYLIFSAAGFKSRAIGDYQVVFSR 254 + ERF R++ YYL A F++R I +QVVFSR Sbjct: 336 DNYSERFKRMFTYYLNACAGAFRARDIQLWQVVFSR 371
>CFA_ECOL6 (P0A9H8) Cyclopropane-fatty-acyl-phospholipid synthase (EC| 2.1.1.79) (Cyclopropane fatty acid synthase) (CFA synthase) Length = 381 Score = 76.3 bits (186), Expect = 6e-14 Identities = 42/96 (43%), Positives = 60/96 (62%) Frame = -3 Query: 541 FIKEYIFPGGCLPSLARIMSAMTASSRFCIEHVENIGPNYYTTLMHWRDNFMANKDQVLA 362 +I +YIFP GCLPS+ +I A ++ F +E N G +Y TTLM W + F+A ++ A Sbjct: 279 WINKYIFPNGCLPSVRQI--AQSSEPHFVMEDWHNFGADYDTTLMAWYERFLAAWPEI-A 335 Query: 361 LGFDERFLRIWEYYLIFSAAGFKSRAIGDYQVVFSR 254 + ERF R++ YYL A F++R I +QVVFSR Sbjct: 336 DNYSERFKRMFTYYLNACAGAFRARDIQLWQVVFSR 371
>YLP3_PSEPU (P31049) Hypothetical 44.7 kDa methyltransferase in lpd-3 5'region| (EC 2.1.1.-) (ORF3) Length = 394 Score = 53.5 bits (127), Expect = 4e-07 Identities = 34/98 (34%), Positives = 50/98 (51%) Frame = -3 Query: 544 DFIKEYIFPGGCLPSLARIMSAMTASSRFCIEHVENIGPNYYTTLMHWRDNFMANKDQVL 365 +FI Y+FP G LP L+ I SA + + VE++ +Y TL HW +N + Sbjct: 282 EFIDRYVFPHGELPHLSMI-SASICEAGLEVVDVESLRLHYAKTLHHWSENLENQLHKAA 340 Query: 364 ALGFDERFLRIWEYYLIFSAAGFKSRAIGDYQVVFSRP 251 AL E+ LRIW YL A F+ I +Q++ +P Sbjct: 341 AL-VPEKTLRIWRLYLAGCAYAFEKGWINLHQILAVKP 377
>CFA1_MYCTU (Q11195) Cyclopropane-fatty-acyl-phospholipid synthase 1 (EC| 2.1.1.79) (Cyclopropane fatty acid synthase) (CFA synthase) (Cyclopropane mycolic acid synthase 1) Length = 287 Score = 49.7 bits (117), Expect = 6e-06 Identities = 27/73 (36%), Positives = 40/73 (54%) Frame = -3 Query: 541 FIKEYIFPGGCLPSLARIMSAMTASSRFCIEHVENIGPNYYTTLMHWRDNFMANKDQVLA 362 FI IFPGG LPS+ + +A+ F + V+++ P+Y TL W ANK Q +A Sbjct: 194 FIVTEIFPGGRLPSIPMVQECASANG-FTVTRVQSLQPHYAKTLDLWSAALQANKGQAIA 252 Query: 361 LGFDERFLRIWEY 323 L +E + R +Y Sbjct: 253 LQSEEVYERYMKY 265
>CFA_CITFR (P45509) Cyclopropane-fatty-acyl-phospholipid synthase (EC| 2.1.1.79) (Cyclopropane fatty acid synthase) (CFA synthase) (Fragment) Length = 89 Score = 48.5 bits (114), Expect = 1e-05 Identities = 28/76 (36%), Positives = 41/76 (53%) Frame = -3 Query: 481 AMTASSRFCIEHVENIGPNYYTTLMHWRDNFMANKDQVLALGFDERFLRIWEYYLIFSAA 302 A + SRF +E N G +Y TLM W + F + L+ + F R++ YYL A Sbjct: 5 AEASESRFVMEDWHNFGSDYDKTLMAWHERFNQAWPE-LSSRYSATFRRMFNYYLCACAG 63 Query: 301 GFKSRAIGDYQVVFSR 254 F++R I +QV+FSR Sbjct: 64 AFRARDIELWQVLFSR 79
>CFA2_MYCTU (P0A5P0) Cyclopropane-fatty-acyl-phospholipid synthase 2 (EC| 2.1.1.79) (Cyclopropane fatty acid synthase) (CFA synthase) (Cyclopropane mycolic acid synthase 2) Length = 302 Score = 47.8 bits (112), Expect = 2e-05 Identities = 27/75 (36%), Positives = 43/75 (57%) Frame = -3 Query: 541 FIKEYIFPGGCLPSLARIMSAMTASSRFCIEHVENIGPNYYTTLMHWRDNFMANKDQVLA 362 FI IFPGG LP ++++ ++++ + +E IG NY TL W D A+KD+ +A Sbjct: 209 FILTEIFPGGRLPRISQV-DYYSSNAGWKVERYHRIGANYVPTLNAWADALQAHKDEAIA 267 Query: 361 LGFDERFLRIWEYYL 317 L E + I+ +YL Sbjct: 268 LKGQETY-DIYMHYL 281
>CFA2_MYCBO (P0A5P1) Cyclopropane-fatty-acyl-phospholipid synthase 2 (EC| 2.1.1.79) (Cyclopropane fatty acid synthase) (CFA synthase) (Cyclopropane mycolic acid synthase 2) Length = 302 Score = 47.8 bits (112), Expect = 2e-05 Identities = 27/75 (36%), Positives = 43/75 (57%) Frame = -3 Query: 541 FIKEYIFPGGCLPSLARIMSAMTASSRFCIEHVENIGPNYYTTLMHWRDNFMANKDQVLA 362 FI IFPGG LP ++++ ++++ + +E IG NY TL W D A+KD+ +A Sbjct: 209 FILTEIFPGGRLPRISQV-DYYSSNAGWKVERYHRIGANYVPTLNAWADALQAHKDEAIA 267 Query: 361 LGFDERFLRIWEYYL 317 L E + I+ +YL Sbjct: 268 LKGQETY-DIYMHYL 281
>MMA1_MYCTU (P0A5Q0) Methoxy mycolic acid synthase 1 (EC 2.1.1.-) (Mycolic| methyltransferase A 1) Length = 286 Score = 46.2 bits (108), Expect = 7e-05 Identities = 26/73 (35%), Positives = 40/73 (54%) Frame = -3 Query: 541 FIKEYIFPGGCLPSLARIMSAMTASSRFCIEHVENIGPNYYTTLMHWRDNFMANKDQVLA 362 F++E IFPGG LPS I+ A+ F IEHV+ + +Y TL W N A +++ +A Sbjct: 193 FLRESIFPGGELPSEPDIVDNAQAAG-FTIEHVQLLQQHYARTLDAWAANLQAARERAIA 251 Query: 361 LGFDERFLRIWEY 323 + +E + Y Sbjct: 252 VQSEEVYNNFMHY 264
>MMA1_MYCBO (P0A5Q1) Methoxy mycolic acid synthase 1 (EC 2.1.1.-) (Mycolic| methyltransferase A 1) Length = 286 Score = 46.2 bits (108), Expect = 7e-05 Identities = 26/73 (35%), Positives = 40/73 (54%) Frame = -3 Query: 541 FIKEYIFPGGCLPSLARIMSAMTASSRFCIEHVENIGPNYYTTLMHWRDNFMANKDQVLA 362 F++E IFPGG LPS I+ A+ F IEHV+ + +Y TL W N A +++ +A Sbjct: 193 FLRESIFPGGELPSEPDIVDNAQAAG-FTIEHVQLLQQHYARTLDAWAANLQAARERAIA 251 Query: 361 LGFDERFLRIWEY 323 + +E + Y Sbjct: 252 VQSEEVYNNFMHY 264
>RIR1_HELPY (P55982) Ribonucleoside-diphosphate reductase alpha subunit (EC| 1.17.4.1) (Ribonucleotide reductase) Length = 788 Score = 33.5 bits (75), Expect = 0.48 Identities = 26/84 (30%), Positives = 34/84 (40%), Gaps = 23/84 (27%) Frame = -3 Query: 577 EERYEQYRKRPDFIKEYI-------------FPGGCLPSLA----------RIMSAMTAS 467 E+RY +Y K P IKEYI F G LP LA + + S Sbjct: 364 EKRYLEYEKDPKIIKEYINAKDLWKKILMNYFEAG-LPFLAFKDNANRCNPNAHAGIIRS 422 Query: 466 SRFCIEHVENIGPNYYTTLMHWRD 395 S C E +N PN+Y + + D Sbjct: 423 SNLCTEIFQNTAPNHYYMQIEYTD 446
>RIR1_HELPJ (Q9ZLF9) Ribonucleoside-diphosphate reductase alpha subunit (EC| 1.17.4.1) (Ribonucleotide reductase) Length = 788 Score = 33.5 bits (75), Expect = 0.48 Identities = 26/84 (30%), Positives = 34/84 (40%), Gaps = 23/84 (27%) Frame = -3 Query: 577 EERYEQYRKRPDFIKEYI-------------FPGGCLPSLA----------RIMSAMTAS 467 E+RY +Y K P IKEYI F G LP LA + + S Sbjct: 364 EKRYLEYEKDPKIIKEYINAKDLWKKILMNYFEAG-LPFLAFKDNANRCNPNAHAGIIRS 422 Query: 466 SRFCIEHVENIGPNYYTTLMHWRD 395 S C E +N PN+Y + + D Sbjct: 423 SNLCTEIFQNTAPNHYYMQIEYTD 446
>Y1285_METJA (Q58681) Hypothetical protein MJ1285| Length = 184 Score = 32.0 bits (71), Expect = 1.4 Identities = 20/74 (27%), Positives = 37/74 (50%) Frame = -3 Query: 475 TASSRFCIEHVENIGPNYYTTLMHWRDNFMANKDQVLALGFDERFLRIWEYYLIFSAAGF 296 T+ SR I+++EN+ +Y +D F+ K + FLRI +Y I +A + Sbjct: 78 TSESRELIKYLENLNGSYIIAYSPSKDEFIITK--------NHEFLRIIGHYNI--SAKY 127 Query: 295 KSRAIGDYQVVFSR 254 K GD ++++ + Sbjct: 128 KKGEYGDIEIIYPK 141 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 95,279,498 Number of Sequences: 219361 Number of extensions: 2153291 Number of successful extensions: 4950 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 4821 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4942 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5196311029 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
