| Clone Name | rbags10b04 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY104403.1| Zea mays PCO068697 mRNA sequence Length = 2273 Score = 317 bits (160), Expect = 2e-83 Identities = 292/336 (86%) Strand = Plus / Minus Query: 271 atctttctgatgacatatggtaggataccaccatgggtgtagtatgcaatctccacctcg 330 ||||||||||||||||||||||| || ||||||||| |||||| |||| ||||||||| Sbjct: 1964 atctttctgatgacatatggtagaatgccaccatggtcgtagtaagcaagctccacctca 1905 Query: 331 gtgtcaaagcggagtgtgcacgtgaacgactttccgttgtctgttgtgactgtaacatct 390 ||||| || | ||||||||| ||||||||||| || || || ||||| || ||||||||| Sbjct: 1904 gtgtcgaatctgagtgtgcaagtgaacgacttcccattatcagttgtcacggtaacatct 1845 Query: 391 tggccaggcttgatttcattcacatcagtgggaagctgaatggtgtagcgctcatggcct 450 ||||||||||| || ||| |||||| || ||||| || | ||||||||||||||||| Sbjct: 1844 tggccaggctttatctcactcacattggttggaaggtggaccgtgtagcgctcatggccg 1785 Query: 451 gttaagccaagagtgtctgcgtcctctccagccttgaagcatagagggacgatgcccatt 510 |||| ||| || |||||||| ||||| || || |||||||||||||||| ||| ||||| Sbjct: 1784 gttaggcccagggtgtctgcatcctcccctgctttgaagcatagagggatgattcccatg 1725 Query: 511 ccagcgagattgctccggtgaatcctctcaaagctcttggatatcacagccttcactccc 570 ||||| |||||||| ||||||||||||||||||||||| | ||||||||||||||||||| Sbjct: 1724 ccagcaagattgctgcggtgaatcctctcaaagctctttgctatcacagccttcactccc 1665 Query: 571 tgaagcattggaccctttgcagcccaatccctagag 606 ||||||||||| ||||||||||||||||||| |||| Sbjct: 1664 tgaagcattgggccctttgcagcccaatcccgagag 1629
>dbj|AK067183.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013095L01, full insert sequence Length = 3231 Score = 226 bits (114), Expect = 7e-56 Identities = 332/404 (82%), Gaps = 3/404 (0%) Strand = Plus / Minus Query: 203 ctgtttacaacaattacaatttgcctcatcggaatcatctagagaacacaccctattgct 262 ||||||||||||||||| ||| ||||||||| |||| ||| ||| || |||| |||| Sbjct: 3041 ctgtttacaacaattacgattcgcctcatcgcaatcttcttgagcgttcatcctactgct 2982 Query: 263 ccgcagcgatctttctgatgacatatggtaggataccaccatgggtgtagtatgcaatct 322 | || |||||||||||||||||| |||| || ||||||| | ||||||||||| || Sbjct: 2981 cggc---gatctttctgatgacatacggtaaaatgccaccattgtcgtagtatgcaagct 2925 Query: 323 ccacctcggtgtcaaagcggagtgtgcacgtgaacgactttccgttgtctgttgtgactg 382 ||||||| |||||||| || |||||||| ||||| ||||| || || || || || || | Sbjct: 2924 ccacctcagtgtcaaatcgaagtgtgcaagtgaaggacttcccattatcagtcgtcacag 2865 Query: 383 taacatcttggccaggcttgatttcattcacatcagtgggaagctgaatggtgtagcgct 442 |||||||||| ||||||||||| ||| | |||| | || || |||| ||| | |||| Sbjct: 2864 taacatcttgcccaggcttgatctcacttacattggccgggaggtgaaccgtgaaacgct 2805 Query: 443 catggcctgttaagccaagagtgtctgcgtcctctccagccttgaagcatagagggacga 502 ||||||| || || ||||| ||||| |||||||| || | ||||||||||||||| | || Sbjct: 2804 catggccagtcaatccaagggtgtcggcgtcctcccctgacttgaagcatagaggaatga 2745 Query: 503 tgcccattccagcgagattgctccggtgaatcctctcaaagctcttggatatcacagcct 562 | ||||| ||||| || ||||| ||||||||||| ||||||||||| | |||||||||| Sbjct: 2744 tacccataccagcaaggttgctgcggtgaatcctttcaaagctcttagcaatcacagcct 2685 Query: 563 tcactccctgaagcattggaccctttgcagcccaatccctagag 606 | |||||||| |||||||||||||| ||||||||||||| |||| Sbjct: 2684 tgactccctgtagcattggacccttcgcagcccaatcccgagag 2641
>dbj|AK061677.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-H07, full insert sequence Length = 1184 Score = 226 bits (114), Expect = 7e-56 Identities = 332/404 (82%), Gaps = 3/404 (0%) Strand = Plus / Minus Query: 203 ctgtttacaacaattacaatttgcctcatcggaatcatctagagaacacaccctattgct 262 ||||||||||||||||| ||| ||||||||| |||| ||| ||| || |||| |||| Sbjct: 982 ctgtttacaacaattacgattcgcctcatcgcaatcttcttgagcgttcatcctactgct 923 Query: 263 ccgcagcgatctttctgatgacatatggtaggataccaccatgggtgtagtatgcaatct 322 | || |||||||||||||||||| |||| || ||||||| | ||||||||||| || Sbjct: 922 cggc---gatctttctgatgacatacggtaaaatgccaccattgtcgtagtatgcaagct 866 Query: 323 ccacctcggtgtcaaagcggagtgtgcacgtgaacgactttccgttgtctgttgtgactg 382 ||||||| |||||||| || |||||||| ||||| ||||| || || || || || || | Sbjct: 865 ccacctcagtgtcaaatcgaagtgtgcaagtgaaggacttcccattatcagtcgtcacag 806 Query: 383 taacatcttggccaggcttgatttcattcacatcagtgggaagctgaatggtgtagcgct 442 |||||||||| ||||||||||| ||| | |||| | || || |||| ||| | |||| Sbjct: 805 taacatcttgcccaggcttgatctcacttacattggccgggaggtgaaccgtgaaacgct 746 Query: 443 catggcctgttaagccaagagtgtctgcgtcctctccagccttgaagcatagagggacga 502 ||||||| || || ||||| ||||| |||||||| || | ||||||||||||||| | || Sbjct: 745 catggccagtcaatccaagggtgtcggcgtcctcccctgacttgaagcatagaggaatga 686 Query: 503 tgcccattccagcgagattgctccggtgaatcctctcaaagctcttggatatcacagcct 562 | ||||| ||||| || ||||| ||||||||||| ||||||||||| | |||||||||| Sbjct: 685 tacccataccagcaaggttgctgcggtgaatcctttcaaagctcttagcaatcacagcct 626 Query: 563 tcactccctgaagcattggaccctttgcagcccaatccctagag 606 | |||||||| |||||||||||||| ||||||||||||| |||| Sbjct: 625 tgactccctgtagcattggacccttcgcagcccaatcccgagag 582
>gb|DQ459071.1| Sorghum bicolor cultivar BTx623 clone BAC c0156b06, complete sequence Length = 112592 Score = 190 bits (96), Expect = 4e-45 Identities = 210/248 (84%) Strand = Plus / Minus Query: 325 acctcggtgtcaaagcggagtgtgcacgtgaacgactttccgttgtctgttgtgactgta 384 ||||| ||||| || | ||||||||| ||||| ||||| || || || ||||| || ||| Sbjct: 95186 acctcagtgtcgaatctgagtgtgcaagtgaatgacttcccattatcagttgtcacagta 95127 Query: 385 acatcttggccaggcttgatttcattcacatcagtgggaagctgaatggtgtagcgctca 444 ||||||||||||||||| || ||| |||| | || ||||| || | |||||||||||| Sbjct: 95126 acatcttggccaggctttatctcactcacgttggttggaaggtggactgtgtagcgctca 95067 Query: 445 tggcctgttaagccaagagtgtctgcgtcctctccagccttgaagcatagagggacgatg 504 ||||| |||| ||| || |||||||| ||||| || || |||||||||||||||| ||| Sbjct: 95066 tggccggttaggcccagggtgtctgcatcctcccctgctttgaagcatagagggatgatt 95007 Query: 505 cccattccagcgagattgctccggtgaatcctctcaaagctcttggatatcacagccttc 564 ||||| ||||| |||||||| ||||||||||||||||||||||| | ||||||||||||| Sbjct: 95006 cccatgccagcaagattgctgcggtgaatcctctcaaagctcttcgctatcacagccttc 94947 Query: 565 actccctg 572 |||||||| Sbjct: 94946 actccctg 94939 Score = 67.9 bits (34), Expect = 4e-08 Identities = 52/58 (89%) Strand = Plus / Minus Query: 271 atctttctgatgacatatggtaggataccaccatgggtgtagtatgcaatctccacct 328 ||||||||| ||||||||||||| |||||||||||| |||||| |||| |||||||| Sbjct: 95324 atctttctggtgacatatggtagaataccaccatggtcgtagtaagcaagctccacct 95267 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Minus Query: 569 cctgaagcattggaccctttgcagcccaatccctagag 606 |||| |||||||| ||||||||||||||||||| |||| Sbjct: 94849 cctgcagcattgggccctttgcagcccaatcccgagag 94812
>gb|AC118132.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0003A09, complete sequence Length = 167222 Score = 127 bits (64), Expect = 5e-26 Identities = 202/248 (81%) Strand = Plus / Plus Query: 325 acctcggtgtcaaagcggagtgtgcacgtgaacgactttccgttgtctgttgtgactgta 384 ||||| |||||||| || |||||||| ||||| ||||| || || || || || || ||| Sbjct: 46431 acctcagtgtcaaatcgaagtgtgcaagtgaaggacttcccattatcagtcgtcacagta 46490 Query: 385 acatcttggccaggcttgatttcattcacatcagtgggaagctgaatggtgtagcgctca 444 |||||||| ||||||||||| ||| | |||| | || || |||| ||| | |||||| Sbjct: 46491 acatcttgcccaggcttgatctcacttacattggccgggaggtgaaccgtgaaacgctca 46550 Query: 445 tggcctgttaagccaagagtgtctgcgtcctctccagccttgaagcatagagggacgatg 504 ||||| || || ||||| ||||| |||||||| || | ||||||||||||||| | ||| Sbjct: 46551 tggccagtcaatccaagggtgtcggcgtcctcccctgacttgaagcatagaggaatgata 46610 Query: 505 cccattccagcgagattgctccggtgaatcctctcaaagctcttggatatcacagccttc 564 ||||| ||||| || ||||| ||||||||||| ||||||||||| | ||||||||||| Sbjct: 46611 cccataccagcaaggttgctgcggtgaatcctttcaaagctcttagcaatcacagccttg 46670 Query: 565 actccctg 572 |||||||| Sbjct: 46671 actccctg 46678 Score = 63.9 bits (32), Expect = 6e-07 Identities = 103/126 (81%), Gaps = 3/126 (2%) Strand = Plus / Plus Query: 203 ctgtttacaacaattacaatttgcctcatcggaatcatctagagaacacaccctattgct 262 ||||||||||||||||| ||| ||||||||| |||| ||| ||| || |||| |||| Sbjct: 46219 ctgtttacaacaattacgattcgcctcatcgcaatcttcttgagcgttcatcctactgct 46278 Query: 263 ccgcagcgatctttctgatgacatatggtaggataccaccatgggtgtagtatgcaatct 322 | || |||||||||||||||||| |||| || ||||||| | ||||||||||| || Sbjct: 46279 cggc---gatctttctgatgacatacggtaaaatgccaccattgtcgtagtatgcaagct 46335 Query: 323 ccacct 328 |||||| Sbjct: 46336 ccacct 46341 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Plus Query: 569 cctgaagcattggaccctttgcagcccaatccctagag 606 |||| |||||||||||||| ||||||||||||| |||| Sbjct: 46756 cctgtagcattggacccttcgcagcccaatcccgagag 46793
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 127 bits (64), Expect = 5e-26 Identities = 202/248 (81%) Strand = Plus / Plus Query: 325 acctcggtgtcaaagcggagtgtgcacgtgaacgactttccgttgtctgttgtgactgta 384 ||||| |||||||| || |||||||| ||||| ||||| || || || || || || ||| Sbjct: 2007670 acctcagtgtcaaatcgaagtgtgcaagtgaaggacttcccattatcagtcgtcacagta 2007729 Query: 385 acatcttggccaggcttgatttcattcacatcagtgggaagctgaatggtgtagcgctca 444 |||||||| ||||||||||| ||| | |||| | || || |||| ||| | |||||| Sbjct: 2007730 acatcttgcccaggcttgatctcacttacattggccgggaggtgaaccgtgaaacgctca 2007789 Query: 445 tggcctgttaagccaagagtgtctgcgtcctctccagccttgaagcatagagggacgatg 504 ||||| || || ||||| ||||| |||||||| || | ||||||||||||||| | ||| Sbjct: 2007790 tggccagtcaatccaagggtgtcggcgtcctcccctgacttgaagcatagaggaatgata 2007849 Query: 505 cccattccagcgagattgctccggtgaatcctctcaaagctcttggatatcacagccttc 564 ||||| ||||| || ||||| ||||||||||| ||||||||||| | ||||||||||| Sbjct: 2007850 cccataccagcaaggttgctgcggtgaatcctttcaaagctcttagcaatcacagccttg 2007909 Query: 565 actccctg 572 |||||||| Sbjct: 2007910 actccctg 2007917 Score = 63.9 bits (32), Expect = 6e-07 Identities = 103/126 (81%), Gaps = 3/126 (2%) Strand = Plus / Plus Query: 203 ctgtttacaacaattacaatttgcctcatcggaatcatctagagaacacaccctattgct 262 ||||||||||||||||| ||| ||||||||| |||| ||| ||| || |||| |||| Sbjct: 2007458 ctgtttacaacaattacgattcgcctcatcgcaatcttcttgagcgttcatcctactgct 2007517 Query: 263 ccgcagcgatctttctgatgacatatggtaggataccaccatgggtgtagtatgcaatct 322 | || |||||||||||||||||| |||| || ||||||| | ||||||||||| || Sbjct: 2007518 cggc---gatctttctgatgacatacggtaaaatgccaccattgtcgtagtatgcaagct 2007574 Query: 323 ccacct 328 |||||| Sbjct: 2007575 ccacct 2007580 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Plus Query: 569 cctgaagcattggaccctttgcagcccaatccctagag 606 |||| |||||||||||||| ||||||||||||| |||| Sbjct: 2007995 cctgtagcattggacccttcgcagcccaatcccgagag 2008032
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 127 bits (64), Expect = 5e-26 Identities = 202/248 (81%) Strand = Plus / Plus Query: 325 acctcggtgtcaaagcggagtgtgcacgtgaacgactttccgttgtctgttgtgactgta 384 ||||| |||||||| || |||||||| ||||| ||||| || || || || || || ||| Sbjct: 2007682 acctcagtgtcaaatcgaagtgtgcaagtgaaggacttcccattatcagtcgtcacagta 2007741 Query: 385 acatcttggccaggcttgatttcattcacatcagtgggaagctgaatggtgtagcgctca 444 |||||||| ||||||||||| ||| | |||| | || || |||| ||| | |||||| Sbjct: 2007742 acatcttgcccaggcttgatctcacttacattggccgggaggtgaaccgtgaaacgctca 2007801 Query: 445 tggcctgttaagccaagagtgtctgcgtcctctccagccttgaagcatagagggacgatg 504 ||||| || || ||||| ||||| |||||||| || | ||||||||||||||| | ||| Sbjct: 2007802 tggccagtcaatccaagggtgtcggcgtcctcccctgacttgaagcatagaggaatgata 2007861 Query: 505 cccattccagcgagattgctccggtgaatcctctcaaagctcttggatatcacagccttc 564 ||||| ||||| || ||||| ||||||||||| ||||||||||| | ||||||||||| Sbjct: 2007862 cccataccagcaaggttgctgcggtgaatcctttcaaagctcttagcaatcacagccttg 2007921 Query: 565 actccctg 572 |||||||| Sbjct: 2007922 actccctg 2007929 Score = 63.9 bits (32), Expect = 6e-07 Identities = 103/126 (81%), Gaps = 3/126 (2%) Strand = Plus / Plus Query: 203 ctgtttacaacaattacaatttgcctcatcggaatcatctagagaacacaccctattgct 262 ||||||||||||||||| ||| ||||||||| |||| ||| ||| || |||| |||| Sbjct: 2007470 ctgtttacaacaattacgattcgcctcatcgcaatcttcttgagcgttcatcctactgct 2007529 Query: 263 ccgcagcgatctttctgatgacatatggtaggataccaccatgggtgtagtatgcaatct 322 | || |||||||||||||||||| |||| || ||||||| | ||||||||||| || Sbjct: 2007530 cggc---gatctttctgatgacatacggtaaaatgccaccattgtcgtagtatgcaagct 2007586 Query: 323 ccacct 328 |||||| Sbjct: 2007587 ccacct 2007592 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Plus Query: 569 cctgaagcattggaccctttgcagcccaatccctagag 606 |||| |||||||||||||| ||||||||||||| |||| Sbjct: 2008007 cctgtagcattggacccttcgcagcccaatcccgagag 2008044
>gb|AF073507.1|AF073507 Citrus limon aconitase-iron regulated protein 1 (IRP1) mRNA, complete cds Length = 3401 Score = 117 bits (59), Expect = 4e-23 Identities = 140/167 (83%) Strand = Plus / Minus Query: 433 gtgtagcgctcatggcctgttaagccaagagtgtctgcgtcctctccagccttgaagcat 492 |||||||||||||| || | ||| || || |||||||| ||||| |||| ||||||||| Sbjct: 2976 gtgtagcgctcatgaccagctaaccccagtgtgtctgcatcctccccaggcttgaagcaa 2917 Query: 493 agagggacgatgcccattccagcgagattgctccggtgaatcctctcaaagctcttggat 552 ||| | | ||||||||| ||| | ||||| || || ||||| |||||||||||||||| Sbjct: 2916 agaagaatgatgcccataccaacaagattactacgatgaattctctcaaagctcttggca 2857 Query: 553 atcacagccttcactccctgaagcattggaccctttgcagcccaatc 599 ||||| || ||||| ||| |||||||||||||||| ||||||||||| Sbjct: 2856 atcactgctttcacacccagaagcattggacccttagcagcccaatc 2810
>ref|NM_119749.3| Arabidopsis thaliana RNA binding / aconitate hydratase/ hydro-lyase/ iron ion binding / lyase AT4G35830 mRNA, complete cds Length = 3214 Score = 109 bits (55), Expect = 1e-20 Identities = 223/279 (79%) Strand = Plus / Minus Query: 321 ctccacctcggtgtcaaagcggagtgtgcacgtgaacgactttccgttgtctgttgtgac 380 ||||||||| |||||||| |||||||| || ||||| || || || |||| ||| ||| Sbjct: 2742 ctccacctctgtgtcaaatcggagtgtacatgtgaaagatttgccattgtttgtgacgac 2683 Query: 381 tgtaacatcttggccaggcttgatttcattcacatcagtgggaagctgaatggtgtagcg 440 ||| |||||||| || || ||||| ||| | |||| | || |||| ||||||||| | Sbjct: 2682 tgttacatcttgtcctggtttgatctcactaacattgtttgggagctcaatggtgtaaag 2623 Query: 441 ctcatggcctgttaagccaagagtgtctgcgtcctctccagccttgaagcatagagggac 500 ||| || || |||| |||||| || || || || ||||| ||||||||||| | ||| | Sbjct: 2622 ctcctgacccgttaggccaagggtctcagcatcttctcccgccttgaagcacaaaggtat 2563 Query: 501 gatgcccattccagcgagattgctccggtgaatcctctcaaagctcttggatatcacagc 560 ||| |||||||| | | |||||| |||||||| | ||| |||||||| || |||||||| Sbjct: 2562 gattcccattcccaccaaattgcttcggtgaattcgctcgaagctctttgaaatcacagc 2503 Query: 561 cttcactccctgaagcattggaccctttgcagcccaatc 599 ||||| ||| |||||||||||||||| ||||||||||| Sbjct: 2502 tttcacacccagaagcattggacccttggcagcccaatc 2464
>emb|X82839.1|ATACON A.thaliana mRNA for aconitase (ZAPII) Length = 3209 Score = 109 bits (55), Expect = 1e-20 Identities = 223/279 (79%) Strand = Plus / Minus Query: 321 ctccacctcggtgtcaaagcggagtgtgcacgtgaacgactttccgttgtctgttgtgac 380 ||||||||| |||||||| |||||||| || ||||| || || || |||| ||| ||| Sbjct: 2698 ctccacctctgtgtcaaatcggagtgtacatgtgaaagatttgccattgtttgtgacgac 2639 Query: 381 tgtaacatcttggccaggcttgatttcattcacatcagtgggaagctgaatggtgtagcg 440 ||| |||||||| || || ||||| ||| | |||| | || |||| ||||||||| | Sbjct: 2638 tgttacatcttgtcctggtttgatctcactaacattgtttgggagctcaatggtgtaaag 2579 Query: 441 ctcatggcctgttaagccaagagtgtctgcgtcctctccagccttgaagcatagagggac 500 ||| || || |||| |||||| || || || || ||||| ||||||||||| | ||| | Sbjct: 2578 ctcctgacccgttaggccaagggtctcagcatcttctcccgccttgaagcacaaaggtat 2519 Query: 501 gatgcccattccagcgagattgctccggtgaatcctctcaaagctcttggatatcacagc 560 ||| |||||||| | | |||||| |||||||| | ||| |||||||| || |||||||| Sbjct: 2518 gattcccattcccaccaaattgcttcggtgaattcgctcgaagctctttgaaatcacagc 2459 Query: 561 cttcactccctgaagcattggaccctttgcagcccaatc 599 ||||| ||| |||||||||||||||| ||||||||||| Sbjct: 2458 tttcacacccagaagcattggacccttggcagcccaatc 2420
>gb|AY062772.1| Arabidopsis thaliana Unknown protein (At4g35830; F4B14.100) mRNA, complete cds Length = 2908 Score = 109 bits (55), Expect = 1e-20 Identities = 223/279 (79%) Strand = Plus / Minus Query: 321 ctccacctcggtgtcaaagcggagtgtgcacgtgaacgactttccgttgtctgttgtgac 380 ||||||||| |||||||| |||||||| || ||||| || || || |||| ||| ||| Sbjct: 2669 ctccacctctgtgtcaaatcggagtgtacatgtgaaagatttgccattgtttgtgacgac 2610 Query: 381 tgtaacatcttggccaggcttgatttcattcacatcagtgggaagctgaatggtgtagcg 440 ||| |||||||| || || ||||| ||| | |||| | || |||| ||||||||| | Sbjct: 2609 tgttacatcttgtcctggtttgatctcactaacattgtttgggagctcaatggtgtaaag 2550 Query: 441 ctcatggcctgttaagccaagagtgtctgcgtcctctccagccttgaagcatagagggac 500 ||| || || |||| |||||| || || || || ||||| ||||||||||| | ||| | Sbjct: 2549 ctcctgacccgttaggccaagggtctcagcatcttctcccgccttgaagcacaaaggtat 2490 Query: 501 gatgcccattccagcgagattgctccggtgaatcctctcaaagctcttggatatcacagc 560 ||| |||||||| | | |||||| |||||||| | ||| |||||||| || |||||||| Sbjct: 2489 gattcccattcccaccaaattgcttcggtgaattcgctcgaagctctttgaaatcacagc 2430 Query: 561 cttcactccctgaagcattggaccctttgcagcccaatc 599 ||||| ||| |||||||||||||||| ||||||||||| Sbjct: 2429 tttcacacccagaagcattggacccttggcagcccaatc 2391
>ref|NM_118831.2| Arabidopsis thaliana RNA binding / aconitate hydratase/ hydro-lyase/ iron ion binding / lyase AT4G26970 mRNA, complete cds Length = 3815 Score = 99.6 bits (50), Expect = 1e-17 Identities = 116/138 (84%) Strand = Plus / Minus Query: 469 gcgtcctctccagccttgaagcatagagggacgatgcccattccagcgagattgctccgg 528 |||||||| ||||||||||| || ||||| | ||| ||||| ||||| || ||||| || Sbjct: 2936 gcgtcctccccagccttgaaacacagaggaatgatccccataccagccaggttgctgcga 2877 Query: 529 tgaatcctctcaaagctcttggatatcacagccttcactccctgaagcattggacccttt 588 || || |||||||||||||||| || ||||| ||||||||| ||||| ||||||||| Sbjct: 2876 tggattctctcaaagctcttggcaattacagctttcactcccaaaagcaagggacccttt 2817 Query: 589 gcagcccaatccctagag 606 ||||||||||||| |||| Sbjct: 2816 gcagcccaatcccgagag 2799
>emb|BX826822.1|CNS0A3BB Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB66ZB08 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1746 Score = 99.6 bits (50), Expect = 1e-17 Identities = 116/138 (84%) Strand = Plus / Minus Query: 469 gcgtcctctccagccttgaagcatagagggacgatgcccattccagcgagattgctccgg 528 |||||||| ||||||||||| || ||||| | ||| ||||| ||||| || ||||| || Sbjct: 1421 gcgtcctccccagccttgaaacacagaggaatgatccccataccagccaggttgctgcga 1362 Query: 529 tgaatcctctcaaagctcttggatatcacagccttcactccctgaagcattggacccttt 588 || || |||||||||||||||| || ||||| ||||||||| ||||| ||||||||| Sbjct: 1361 tggattctctcaaagctcttggcaattacagctttcactcccaaaagcaagggacccttt 1302 Query: 589 gcagcccaatccctagag 606 ||||||||||||| |||| Sbjct: 1301 gcagcccaatcccgagag 1284
>emb|BX829196.1|CNS0A2JS Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL80ZC05 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1030 Score = 99.6 bits (50), Expect = 1e-17 Identities = 116/138 (84%) Strand = Plus / Minus Query: 469 gcgtcctctccagccttgaagcatagagggacgatgcccattccagcgagattgctccgg 528 |||||||| ||||||||||| || ||||| | ||| ||||| ||||| || ||||| || Sbjct: 651 gcgtcctccccagccttgaaacacagaggaatgatccccataccagccaggttgctgcga 592 Query: 529 tgaatcctctcaaagctcttggatatcacagccttcactccctgaagcattggacccttt 588 || || |||||||||||||||| || ||||| ||||||||| ||||| ||||||||| Sbjct: 591 tggattctctcaaagctcttggcaattacagctttcactcccaaaagcaagggacccttt 532 Query: 589 gcagcccaatccctagag 606 ||||||||||||| |||| Sbjct: 531 gcagcccaatcccgagag 514
>gb|BT000492.1| Arabidopsis thaliana putative aconitase (At4g26970/F10M23_310) mRNA, complete cds Length = 2988 Score = 91.7 bits (46), Expect = 3e-15 Identities = 115/138 (83%) Strand = Plus / Minus Query: 469 gcgtcctctccagccttgaagcatagagggacgatgcccattccagcgagattgctccgg 528 |||||||| ||||||||||| || ||||| | ||| ||||| ||||| || ||||| || Sbjct: 2777 gcgtcctccccagccttgaaacacagaggaatgatccccataccagccaggttgctgcga 2718 Query: 529 tgaatcctctcaaagctcttggatatcacagccttcactccctgaagcattggacccttt 588 || || ||| |||||||||||| || ||||| ||||||||| ||||| ||||||||| Sbjct: 2717 tggattctcccaaagctcttggcaattacagctttcactcccaaaagcaagggacccttt 2658 Query: 589 gcagcccaatccctagag 606 ||||||||||||| |||| Sbjct: 2657 gcagcccaatcccgagag 2640
>gb|AY050431.1| Arabidopsis thaliana AT4g26970/F10M23_310 mRNA, complete cds Length = 3291 Score = 91.7 bits (46), Expect = 3e-15 Identities = 115/138 (83%) Strand = Plus / Minus Query: 469 gcgtcctctccagccttgaagcatagagggacgatgcccattccagcgagattgctccgg 528 |||||||| ||||||||||| || ||||| | ||| ||||| ||||| || ||||| || Sbjct: 2932 gcgtcctccccagccttgaaacacagaggaatgatccccataccagccaggttgctgcga 2873 Query: 529 tgaatcctctcaaagctcttggatatcacagccttcactccctgaagcattggacccttt 588 || || ||| |||||||||||| || ||||| ||||||||| ||||| ||||||||| Sbjct: 2872 tggattctcccaaagctcttggcaattacagctttcactcccaaaagcaagggacccttt 2813 Query: 589 gcagcccaatccctagag 606 ||||||||||||| |||| Sbjct: 2812 gcagcccaatcccgagag 2795
>ref|NM_126589.2| Arabidopsis thaliana RNA binding / aconitate hydratase/ hydro-lyase/ iron ion binding / lyase AT2G05710 mRNA, complete cds Length = 3493 Score = 89.7 bits (45), Expect = 1e-14 Identities = 105/125 (84%) Strand = Plus / Minus Query: 274 tttctgatgacatatggtaggataccaccatgggtgtagtatgcaatctccacctcggtg 333 |||||||| |||||||| || || || |||||| | ||||||| | |||||||| ||| Sbjct: 3149 tttctgataacatatggaagtatgcctccatggttaaagtatgccaattccacctctgtg 3090 Query: 334 tcaaagcggagtgtgcacgtgaacgactttccgttgtctgttgtgactgtaacatcttgg 393 || ||||||| |||||| ||||| || ||||||||||| || ||||| |||||||||||| Sbjct: 3089 tcgaagcggactgtgcaagtgaaagattttccgttgtcggtagtgacggtaacatcttgg 3030 Query: 394 ccagg 398 ||||| Sbjct: 3029 ccagg 3025 Score = 56.0 bits (28), Expect = 1e-04 Identities = 67/80 (83%) Strand = Plus / Minus Query: 520 ttgctccggtgaatcctctcaaagctcttggatatcacagccttcactccctgaagcatt 579 ||||| ||||||||||||||||| ||||| | ||||| || || || ||||| ||||| Sbjct: 2903 ttgcttcggtgaatcctctcaaaactctttgcaatcaccgctttaacaccctgtagcatg 2844 Query: 580 ggaccctttgcagcccaatc 599 || ||||| ||||||||||| Sbjct: 2843 ggtcccttggcagcccaatc 2824
>gb|BT008809.1| Arabidopsis thaliana At2g05710 gene, complete cds Length = 2973 Score = 89.7 bits (45), Expect = 1e-14 Identities = 105/125 (84%) Strand = Plus / Minus Query: 274 tttctgatgacatatggtaggataccaccatgggtgtagtatgcaatctccacctcggtg 333 |||||||| |||||||| || || || |||||| | ||||||| | |||||||| ||| Sbjct: 2957 tttctgataacatatggaagtatgcctccatggttaaagtatgccaattccacctctgtg 2898 Query: 334 tcaaagcggagtgtgcacgtgaacgactttccgttgtctgttgtgactgtaacatcttgg 393 || ||||||| |||||| ||||| || ||||||||||| || ||||| |||||||||||| Sbjct: 2897 tcgaagcggactgtgcaagtgaaagattttccgttgtcggtagtgacggtaacatcttgg 2838 Query: 394 ccagg 398 ||||| Sbjct: 2837 ccagg 2833 Score = 56.0 bits (28), Expect = 1e-04 Identities = 67/80 (83%) Strand = Plus / Minus Query: 520 ttgctccggtgaatcctctcaaagctcttggatatcacagccttcactccctgaagcatt 579 ||||| ||||||||||||||||| ||||| | ||||| || || || ||||| ||||| Sbjct: 2711 ttgcttcggtgaatcctctcaaaactctttgcaatcaccgctttaacaccctgtagcatg 2652 Query: 580 ggaccctttgcagcccaatc 599 || ||||| ||||||||||| Sbjct: 2651 ggtcccttggcagcccaatc 2632
>gb|AY136414.1| Arabidopsis thaliana cytoplasmic aconitate hydratase (At2g05710) mRNA, complete cds Length = 3372 Score = 89.7 bits (45), Expect = 1e-14 Identities = 105/125 (84%) Strand = Plus / Minus Query: 274 tttctgatgacatatggtaggataccaccatgggtgtagtatgcaatctccacctcggtg 333 |||||||| |||||||| || || || |||||| | ||||||| | |||||||| ||| Sbjct: 3123 tttctgataacatatggaagtatgcctccatggttaaagtatgccaattccacctctgtg 3064 Query: 334 tcaaagcggagtgtgcacgtgaacgactttccgttgtctgttgtgactgtaacatcttgg 393 || ||||||| |||||| ||||| || ||||||||||| || ||||| |||||||||||| Sbjct: 3063 tcgaagcggactgtgcaagtgaaagattttccgttgtcggtagtgacggtaacatcttgg 3004 Query: 394 ccagg 398 ||||| Sbjct: 3003 ccagg 2999 Score = 56.0 bits (28), Expect = 1e-04 Identities = 67/80 (83%) Strand = Plus / Minus Query: 520 ttgctccggtgaatcctctcaaagctcttggatatcacagccttcactccctgaagcatt 579 ||||| ||||||||||||||||| ||||| | ||||| || || || ||||| ||||| Sbjct: 2877 ttgcttcggtgaatcctctcaaaactctttgcaatcaccgctttaacaccctgtagcatg 2818 Query: 580 ggaccctttgcagcccaatc 599 || ||||| ||||||||||| Sbjct: 2817 ggtcccttggcagcccaatc 2798
>dbj|AK222094.1| Arabidopsis thaliana mRNA for cytoplasmic aconitate hydratase, partial cds, clone: RAFL22-86-H10 Length = 1232 Score = 89.7 bits (45), Expect = 1e-14 Identities = 105/125 (84%) Strand = Plus / Minus Query: 274 tttctgatgacatatggtaggataccaccatgggtgtagtatgcaatctccacctcggtg 333 |||||||| |||||||| || || || |||||| | ||||||| | |||||||| ||| Sbjct: 973 tttctgataacatatggaagtatgcctccatggttaaagtatgccaattccacctctgtg 914 Query: 334 tcaaagcggagtgtgcacgtgaacgactttccgttgtctgttgtgactgtaacatcttgg 393 || ||||||| |||||| ||||| || ||||||||||| || ||||| |||||||||||| Sbjct: 913 tcgaagcggactgtgcaagtgaaagattttccgttgtcggtagtgacggtaacatcttgg 854 Query: 394 ccagg 398 ||||| Sbjct: 853 ccagg 849 Score = 56.0 bits (28), Expect = 1e-04 Identities = 67/80 (83%) Strand = Plus / Minus Query: 520 ttgctccggtgaatcctctcaaagctcttggatatcacagccttcactccctgaagcatt 579 ||||| ||||||||||||||||| ||||| | ||||| || || || ||||| ||||| Sbjct: 727 ttgcttcggtgaatcctctcaaaactctttgcaatcaccgctttaacaccctgtagcatg 668 Query: 580 ggaccctttgcagcccaatc 599 || ||||| ||||||||||| Sbjct: 667 ggtcccttggcagcccaatc 648
>gb|AY050485.1| Prunus avium putative aconitase mRNA, complete cds Length = 3146 Score = 87.7 bits (44), Expect = 4e-14 Identities = 116/140 (82%) Strand = Plus / Minus Query: 460 agagtgtctgcgtcctctccagccttgaagcatagagggacgatgcccattccagcgaga 519 |||||||||||||| || |||| ||| || ||||| || | ||||||||| || | ||| Sbjct: 2625 agagtgtctgcgtcttccccagtcttaaaacatagtggaatgatgcccatgcccacaaga 2566 Query: 520 ttgctccggtgaatcctctcaaagctcttggatatcacagccttcactccctgaagcatt 579 || || |||||||| | |||||||||||| | ||| || |||||||| ||| | |||||| Sbjct: 2565 ttactgcggtgaatgcgctcaaagctctttgctatgactgccttcacacccagtagcatt 2506 Query: 580 ggaccctttgcagcccaatc 599 |||||||| ||||||||||| Sbjct: 2505 ggacccttagcagcccaatc 2486
>gb|AF194945.1|AF194945 Nicotiana tabacum cytosolic aconitase (ACO) mRNA, complete cds Length = 3025 Score = 81.8 bits (41), Expect = 2e-12 Identities = 98/117 (83%) Strand = Plus / Minus Query: 429 aatggtgtagcgctcatggcctgttaagccaagagtgtctgcgtcctctccagccttgaa 488 |||||| || |||||||| ||||| || ||||| || ||||| ||||| ||||||||||| Sbjct: 2564 aatggtatatcgctcatgacctgtcaacccaagtgtttctgcatcctcaccagccttgaa 2505 Query: 489 gcatagagggacgatgcccattccagcgagattgctccggtgaatcctctcaaagct 545 |||||||| || || |||||||| | | ||||| |||||||||||||||||||| Sbjct: 2504 acatagaggcacaatacccattcctaccaagttgctacggtgaatcctctcaaagct 2448
>gb|AC007170.6| Arabidopsis thaliana chromosome 2 clone T3P4 map mi310, complete sequence Length = 78568 Score = 75.8 bits (38), Expect = 1e-10 Identities = 65/74 (87%) Strand = Plus / Plus Query: 325 acctcggtgtcaaagcggagtgtgcacgtgaacgactttccgttgtctgttgtgactgta 384 ||||| ||||| ||||||| |||||| ||||| || ||||||||||| || ||||| ||| Sbjct: 23181 acctctgtgtcgaagcggactgtgcaagtgaaagattttccgttgtcggtagtgacggta 23240 Query: 385 acatcttggccagg 398 |||||||||||||| Sbjct: 23241 acatcttggccagg 23254 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 520 ttgctccggtgaatcctctcaaagctctt 548 ||||| ||||||||||||||||| ||||| Sbjct: 23376 ttgcttcggtgaatcctctcaaaactctt 23404
>emb|X97012.1|STRNAAAH S.tuberosum mRNA for aconitase/aconitate hydratase Length = 2120 Score = 69.9 bits (35), Expect = 9e-09 Identities = 137/171 (80%) Strand = Plus / Minus Query: 429 aatggtgtagcgctcatggcctgttaagccaagagtgtctgcgtcctctccagccttgaa 488 |||||| || ||||| || ||||| || ||||| || ||||| ||||| ||||||||||| Sbjct: 1680 aatggtatatcgctcttgacctgtcaatccaagtgtatctgcatcctccccagccttgaa 1621 Query: 489 gcatagagggacgatgcccattccagcgagattgctccggtgaatcctctcaaagctctt 548 ||||||||| || || |||||||| | | || || || ||||||||||| |||||||| Sbjct: 1620 gcatagaggcacaatacccattcctaccaagttactacgatgaatcctctcgaagctctt 1561 Query: 549 ggatatcacagccttcactccctgaagcattggaccctttgcagcccaatc 599 | || ||||| || |||||| | |||||| ||||| ||||||||||| Sbjct: 1560 cgcaattacagctttaactcccaacaacattggtcccttggcagcccaatc 1510
>emb|AL161566.2|ATCHRIV66 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 66 Length = 198372 Score = 69.9 bits (35), Expect = 9e-09 Identities = 86/103 (83%) Strand = Plus / Minus Query: 469 gcgtcctctccagccttgaagcatagagggacgatgcccattccagcgagattgctccgg 528 |||||||| ||||||||||| || ||||| | ||| ||||| ||||| || ||||| || Sbjct: 51988 gcgtcctccccagccttgaaacacagaggaatgatccccataccagccaggttgctgcga 51929 Query: 529 tgaatcctctcaaagctcttggatatcacagccttcactccct 571 || || |||||||||||||||| || ||||| |||||||||| Sbjct: 51928 tggattctctcaaagctcttggcaattacagctttcactccct 51886 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Minus Query: 580 ggaccctttgcagcccaatccctagag 606 |||||||||||||||||||||| |||| Sbjct: 51801 ggaccctttgcagcccaatcccgagag 51775
>emb|AL035440.2|ATF10M23 Arabidopsis thaliana DNA chromosome 4, BAC clone F10M23 (ESSA project) Length = 128574 Score = 69.9 bits (35), Expect = 9e-09 Identities = 86/103 (83%) Strand = Plus / Minus Query: 469 gcgtcctctccagccttgaagcatagagggacgatgcccattccagcgagattgctccgg 528 |||||||| ||||||||||| || ||||| | ||| ||||| ||||| || ||||| || Sbjct: 96145 gcgtcctccccagccttgaaacacagaggaatgatccccataccagccaggttgctgcga 96086 Query: 529 tgaatcctctcaaagctcttggatatcacagccttcactccct 571 || || |||||||||||||||| || ||||| |||||||||| Sbjct: 96085 tggattctctcaaagctcttggcaattacagctttcactccct 96043 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Minus Query: 580 ggaccctttgcagcccaatccctagag 606 |||||||||||||||||||||| |||| Sbjct: 95958 ggaccctttgcagcccaatcccgagag 95932
>emb|AL161588.2|ATCHRIV84 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 84 Length = 195452 Score = 63.9 bits (32), Expect = 6e-07 Identities = 194/248 (78%) Strand = Plus / Plus Query: 325 acctcggtgtcaaagcggagtgtgcacgtgaacgactttccgttgtctgttgtgactgta 384 ||||| |||||||| |||||||| || ||||| || || || |||| ||| |||||| Sbjct: 44940 acctctgtgtcaaatcggagtgtacatgtgaaagatttgccattgtttgtgacgactgtt 44999 Query: 385 acatcttggccaggcttgatttcattcacatcagtgggaagctgaatggtgtagcgctca 444 |||||||| || || ||||| ||| | |||| | || |||| ||||||||| |||| Sbjct: 45000 acatcttgtcctggtttgatctcactaacattgtttgggagctcaatggtgtaaagctcc 45059 Query: 445 tggcctgttaagccaagagtgtctgcgtcctctccagccttgaagcatagagggacgatg 504 || || |||| |||||| || || || || ||||| ||||||||||| | ||| | ||| Sbjct: 45060 tgacccgttaggccaagggtctcagcatcttctcccgccttgaagcacaaaggtatgatt 45119 Query: 505 cccattccagcgagattgctccggtgaatcctctcaaagctcttggatatcacagccttc 564 |||||||| | | |||||| |||||||| | ||| |||||||| || |||||||| ||| Sbjct: 45120 cccattcccaccaaattgcttcggtgaattcgctcgaagctctttgaaatcacagctttc 45179 Query: 565 actccctg 572 || ||||| Sbjct: 45180 acaccctg 45187 Score = 48.1 bits (24), Expect = 0.034 Identities = 27/28 (96%) Strand = Plus / Plus Query: 572 gaagcattggaccctttgcagcccaatc 599 |||||||||||||||| ||||||||||| Sbjct: 45261 gaagcattggacccttggcagcccaatc 45288
>emb|X82841.1|ATACO A.thaliana Aco gene Length = 6758 Score = 63.9 bits (32), Expect = 6e-07 Identities = 194/248 (78%) Strand = Plus / Minus Query: 325 acctcggtgtcaaagcggagtgtgcacgtgaacgactttccgttgtctgttgtgactgta 384 ||||| |||||||| |||||||| || ||||| || || || |||| ||| |||||| Sbjct: 6137 acctctgtgtcaaatcggagtgtacatgtgaaagatttgccattgtttgtgacgactgtt 6078 Query: 385 acatcttggccaggcttgatttcattcacatcagtgggaagctgaatggtgtagcgctca 444 |||||||| || || ||||| ||| | |||| | || |||| ||||||||| |||| Sbjct: 6077 acatcttgtcctggtttgatctcactaacattgtttgggagctcaatggtgtaaagctcc 6018 Query: 445 tggcctgttaagccaagagtgtctgcgtcctctccagccttgaagcatagagggacgatg 504 || || |||| |||||| || || || || ||||| ||||||||||| | ||| | ||| Sbjct: 6017 tgacccgttaggccaagggtctcagcatcttctcccgccttgaagcacaaaggtatgatt 5958 Query: 505 cccattccagcgagattgctccggtgaatcctctcaaagctcttggatatcacagccttc 564 |||||||| | | |||||| |||||||| | ||| |||||||| || |||||||| ||| Sbjct: 5957 cccattcccaccaaattgcttcggtgaattcgctcgaagctctttgaaatcacagctttc 5898 Query: 565 actccctg 572 || ||||| Sbjct: 5897 acaccctg 5890 Score = 48.1 bits (24), Expect = 0.034 Identities = 27/28 (96%) Strand = Plus / Minus Query: 572 gaagcattggaccctttgcagcccaatc 599 |||||||||||||||| ||||||||||| Sbjct: 5816 gaagcattggacccttggcagcccaatc 5789
>emb|AL031986.1|ATF4B14 Arabidopsis thaliana DNA chromosome 4, BAC clone F4B14 (ESSA project) Length = 99461 Score = 63.9 bits (32), Expect = 6e-07 Identities = 194/248 (78%) Strand = Plus / Plus Query: 325 acctcggtgtcaaagcggagtgtgcacgtgaacgactttccgttgtctgttgtgactgta 384 ||||| |||||||| |||||||| || ||||| || || || |||| ||| |||||| Sbjct: 36744 acctctgtgtcaaatcggagtgtacatgtgaaagatttgccattgtttgtgacgactgtt 36803 Query: 385 acatcttggccaggcttgatttcattcacatcagtgggaagctgaatggtgtagcgctca 444 |||||||| || || ||||| ||| | |||| | || |||| ||||||||| |||| Sbjct: 36804 acatcttgtcctggtttgatctcactaacattgtttgggagctcaatggtgtaaagctcc 36863 Query: 445 tggcctgttaagccaagagtgtctgcgtcctctccagccttgaagcatagagggacgatg 504 || || |||| |||||| || || || || ||||| ||||||||||| | ||| | ||| Sbjct: 36864 tgacccgttaggccaagggtctcagcatcttctcccgccttgaagcacaaaggtatgatt 36923 Query: 505 cccattccagcgagattgctccggtgaatcctctcaaagctcttggatatcacagccttc 564 |||||||| | | |||||| |||||||| | ||| |||||||| || |||||||| ||| Sbjct: 36924 cccattcccaccaaattgcttcggtgaattcgctcgaagctctttgaaatcacagctttc 36983 Query: 565 actccctg 572 || ||||| Sbjct: 36984 acaccctg 36991 Score = 48.1 bits (24), Expect = 0.034 Identities = 27/28 (96%) Strand = Plus / Plus Query: 572 gaagcattggaccctttgcagcccaatc 599 |||||||||||||||| ||||||||||| Sbjct: 37065 gaagcattggacccttggcagcccaatc 37092
>ref|XM_480473.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2697 Score = 61.9 bits (31), Expect = 2e-06 Identities = 88/107 (82%) Strand = Plus / Minus Query: 279 gatgacatatggtaggataccaccatgggtgtagtatgcaatctccacctcggtgtcaaa 338 |||||| ||||| ||||| || |||||| || ||||||| | |||||||| |||||||| Sbjct: 2676 gatgacgtatgggaggatgcctccatggttgaagtatgccagttccacctctgtgtcaaa 2617 Query: 339 gcggagtgtgcacgtgaacgactttccgttgtctgttgtgactgtaa 385 ||| || || || ||||| || || |||||||| |||||||| |||| Sbjct: 2616 gcgaagagtacaagtgaaggatttcccgttgtcggttgtgacggtaa 2570 Score = 54.0 bits (27), Expect = 5e-04 Identities = 132/167 (79%) Strand = Plus / Minus Query: 430 atggtgtagcgctcatggcctgttaagccaagagtgtctgcgtcctctccagccttgaag 489 ||||| || |||||||| || || | |||||| | ||| || ||||| |||||||||||| Sbjct: 2525 atggtataccgctcatgtccagtaaggccaagtgagtcggcatcctcaccagccttgaag 2466 Query: 490 catagagggacgatgcccattccagcgagattgctccggtgaatcctctcaaagctcttg 549 || ||||| | ||| ||||| || | || ||||| ||||| || | |||||||||||| Sbjct: 2465 cagagaggaatgattcccatacccaccaggttgcttcggtggatacgctcaaagctctta 2406 Query: 550 gatatcacagccttcactccctgaagcattggaccctttgcagccca 596 | |||||||| || || ||| | ||||| || ||||| |||||||| Sbjct: 2405 gcgatcacagctttaacacccaggagcatcggtcccttggcagccca 2359
>dbj|AB236788.1| Trifolium pratense RNA for putative cytoplasmic aconitate hydratase, partial cds, clone: C1842 Length = 1248 Score = 60.0 bits (30), Expect = 9e-06 Identities = 63/74 (85%) Strand = Plus / Minus Query: 529 tgaatcctctcaaagctcttggatatcacagccttcactccctgaagcattggacccttt 588 |||||||||||||| || |||||||||||||| || |||||| | ||| |||||||| Sbjct: 677 tgaatcctctcaaaacttttggatatcacagctttgactcccaataacatgggacccttg 618 Query: 589 gcagcccaatccct 602 || ||||||||||| Sbjct: 617 gcggcccaatccct 604 Score = 56.0 bits (28), Expect = 1e-04 Identities = 67/80 (83%) Strand = Plus / Minus Query: 322 tccacctcggtgtcaaagcggagtgtgcacgtgaacgactttccgttgtctgttgtgact 381 |||||||| || |||||||| |||||| ||||| || |||||||| || |||||||| Sbjct: 884 tccacctcagtatcaaagcgagctgtgcaggtgaaagattttccgttatcggttgtgaca 825 Query: 382 gtaacatcttggccaggctt 401 || || |||||||||||||| Sbjct: 824 gtgacgtcttggccaggctt 805
>emb|X82840.1|CMACON C.melo mRNA for aconitase (UNI-ZAPxR) Length = 2594 Score = 56.0 bits (28), Expect = 1e-04 Identities = 103/128 (80%) Strand = Plus / Minus Query: 472 tcctctccagccttgaagcatagagggacgatgcccattccagcgagattgctccggtga 531 ||||| ||||||||||| |||||||| | ||| ||||| || | | ||||| ||||| Sbjct: 2077 tcctccccagccttgaaacatagaggaatgatacccataccgaccaagttgcttcggtgt 2018 Query: 532 atcctctcaaagctcttggatatcacagccttcactccctgaagcattggaccctttgca 591 || | ||||||||||| | ||| || || || || ||| |||||||||||||||| ||| Sbjct: 2017 atacgttcaaagctctttgctataaccgctttaacacccagaagcattggacccttggca 1958 Query: 592 gcccaatc 599 |||||||| Sbjct: 1957 gcccaatc 1950
>gb|BT024088.1| Zea mays clone EL01N0553G09 mRNA sequence Length = 1988 Score = 54.0 bits (27), Expect = 5e-04 Identities = 54/63 (85%) Strand = Plus / Minus Query: 537 ctcaaagctcttggatatcacagccttcactccctgaagcattggaccctttgcagccca 596 |||||||||||||| || ||||| || |||||| | ||||| |||||||| |||||||| Sbjct: 1365 ctcaaagctcttggcaattacagctttaactcccaggagcatcggacccttagcagccca 1306 Query: 597 atc 599 ||| Sbjct: 1305 atc 1303 Score = 46.1 bits (23), Expect = 0.13 Identities = 53/63 (84%) Strand = Plus / Minus Query: 279 gatgacatatggtaggataccaccatgggtgtagtatgcaatctccacctcggtgtcaaa 338 ||||||||| || ||||| || |||||| || |||| || | ||||||||| |||||||| Sbjct: 1623 gatgacataagggaggatgcctccatggttgaagtacgccagctccacctcagtgtcaaa 1564 Query: 339 gcg 341 ||| Sbjct: 1563 gcg 1561
>gb|AY104770.1| Zea mays PCO074909 mRNA sequence Length = 3628 Score = 54.0 bits (27), Expect = 5e-04 Identities = 54/63 (85%) Strand = Plus / Minus Query: 537 ctcaaagctcttggatatcacagccttcactccctgaagcattggaccctttgcagccca 596 |||||||||||||| || ||||| || |||||| | ||||| |||||||| |||||||| Sbjct: 2753 ctcaaagctcttggcaattacagctttaactcccaggagcatcggacccttagcagccca 2694 Query: 597 atc 599 ||| Sbjct: 2693 atc 2691 Score = 46.1 bits (23), Expect = 0.13 Identities = 53/63 (84%) Strand = Plus / Minus Query: 279 gatgacatatggtaggataccaccatgggtgtagtatgcaatctccacctcggtgtcaaa 338 ||||||||| || ||||| || |||||| || |||| || | ||||||||| |||||||| Sbjct: 3011 gatgacataagggaggatgcctccatggttgaagtacgccagctccacctcagtgtcaaa 2952 Query: 339 gcg 341 ||| Sbjct: 2951 gcg 2949
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 50.1 bits (25), Expect = 0.009 Identities = 115/145 (79%) Strand = Plus / Plus Query: 430 atggtgtagcgctcatggcctgttaagccaagagtgtctgcgtcctctccagccttgaag 489 ||||| || |||||||| || || | |||||| | ||| || ||||| |||||||||||| Sbjct: 5322053 atggtataccgctcatgtccagtaaggccaagtgagtcggcatcctcaccagccttgaag 5322112 Query: 490 catagagggacgatgcccattccagcgagattgctccggtgaatcctctcaaagctcttg 549 || ||||| | ||| ||||| || | || ||||| ||||| || | |||||||||||| Sbjct: 5322113 cagagaggaatgattcccatacccaccaggttgcttcggtggatacgctcaaagctctta 5322172 Query: 550 gatatcacagccttcactccctgaa 574 | |||||||| || || ||||||| Sbjct: 5322173 gcgatcacagctttaacaccctgaa 5322197 Score = 42.1 bits (21), Expect = 2.1 Identities = 51/61 (83%) Strand = Plus / Plus Query: 325 acctcggtgtcaaagcggagtgtgcacgtgaacgactttccgttgtctgttgtgactgta 384 ||||| ||||||||||| || || || ||||| || || |||||||| |||||||| ||| Sbjct: 5321948 acctctgtgtcaaagcgaagagtacaagtgaaggatttcccgttgtcggttgtgacggta 5322007 Query: 385 a 385 | Sbjct: 5322008 a 5322008
>dbj|AP005505.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0610E02 Length = 135816 Score = 50.1 bits (25), Expect = 0.009 Identities = 115/145 (79%) Strand = Plus / Plus Query: 430 atggtgtagcgctcatggcctgttaagccaagagtgtctgcgtcctctccagccttgaag 489 ||||| || |||||||| || || | |||||| | ||| || ||||| |||||||||||| Sbjct: 113641 atggtataccgctcatgtccagtaaggccaagtgagtcggcatcctcaccagccttgaag 113700 Query: 490 catagagggacgatgcccattccagcgagattgctccggtgaatcctctcaaagctcttg 549 || ||||| | ||| ||||| || | || ||||| ||||| || | |||||||||||| Sbjct: 113701 cagagaggaatgattcccatacccaccaggttgcttcggtggatacgctcaaagctctta 113760 Query: 550 gatatcacagccttcactccctgaa 574 | |||||||| || || ||||||| Sbjct: 113761 gcgatcacagctttaacaccctgaa 113785 Score = 42.1 bits (21), Expect = 2.1 Identities = 51/61 (83%) Strand = Plus / Plus Query: 325 acctcggtgtcaaagcggagtgtgcacgtgaacgactttccgttgtctgttgtgactgta 384 ||||| ||||||||||| || || || ||||| || || |||||||| |||||||| ||| Sbjct: 113536 acctctgtgtcaaagcgaagagtacaagtgaaggatttcccgttgtcggttgtgacggta 113595 Query: 385 a 385 | Sbjct: 113596 a 113596
>gb|BT016334.1| Zea mays clone Contig167 mRNA sequence Length = 1269 Score = 46.1 bits (23), Expect = 0.13 Identities = 53/63 (84%) Strand = Plus / Minus Query: 279 gatgacatatggtaggataccaccatgggtgtagtatgcaatctccacctcggtgtcaaa 338 ||||||||| || ||||| || |||||| || |||| || | ||||||||| |||||||| Sbjct: 866 gatgacataagggaggatgcctccatggttgaagtacgccagctccacctcagtgtcaaa 807 Query: 339 gcg 341 ||| Sbjct: 806 gcg 804 Score = 46.1 bits (23), Expect = 0.13 Identities = 53/63 (84%) Strand = Plus / Minus Query: 537 ctcaaagctcttggatatcacagccttcactccctgaagcattggaccctttgcagccca 596 |||||||||||||| || ||||| || |||| | | ||||| |||||||| |||||||| Sbjct: 608 ctcaaagctcttggcaattacagctttaactctcaggagcatcggacccttagcagccca 549 Query: 597 atc 599 ||| Sbjct: 548 atc 546
>gb|AC183804.3| Pan troglodytes BAC clone CH251-67P16 from chromosome 2, complete sequence Length = 169437 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 130 atttctgagttctctgcagacat 152 ||||||||||||||||||||||| Sbjct: 75350 atttctgagttctctgcagacat 75328
>emb|AL445063.1|TACID1 Thermoplasma acidophilum complete genome; segment 1/5 Length = 344000 Score = 46.1 bits (23), Expect = 0.13 Identities = 59/71 (83%) Strand = Plus / Minus Query: 505 cccattccagcgagattgctccggtgaatcctctcaaagctcttggatatcacagccttc 564 ||||||||| |||| ||||| || || |||||||| ||||||| | ||| || |||||| Sbjct: 106974 cccattccaacgaggttgctgcgatgtatcctctcgtagctctttgctatgacggccttc 106915 Query: 565 actccctgaag 575 |||||| |||| Sbjct: 106914 actcccagaag 106904
>emb|CR932965.2| Medicago truncatula chromosome 5 clone mth2-47e6, COMPLETE SEQUENCE Length = 96647 Score = 46.1 bits (23), Expect = 0.13 Identities = 113/143 (79%) Strand = Plus / Plus Query: 429 aatggtgtagcgctcatggcctgttaagccaagagtgtctgcgtcctctccagccttgaa 488 ||||||||| || ||||| || || || |||||||| || || ||||| |||| |||||| Sbjct: 52730 aatggtgtaacgttcatgaccggtcaatccaagagtatcggcatcctccccagacttgaa 52789 Query: 489 gcatagagggacgatgcccattccagcgagattgctccggtgaatcctctcaaagctctt 548 || | ||| | ||||||||||| | | ||| || ||||||||||| |||||||| || Sbjct: 52790 acacaaaggaattatgcccattcccaccaaattactgcggtgaatcctttcaaagctttt 52849 Query: 549 ggatatcacagccttcactccct 571 | ||| ||||| ||||| |||| Sbjct: 52850 tgctatgacagctttcacgccct 52872
>gb|AC017099.11| Homo sapiens BAC clone RP11-542D13 from 2, complete sequence Length = 230426 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 130 atttctgagttctctgcagacat 152 ||||||||||||||||||||||| Sbjct: 132283 atttctgagttctctgcagacat 132261
>gb|AC013272.5| Homo sapiens BAC clone RP11-401C13 from 2, complete sequence Length = 172705 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 130 atttctgagttctctgcagacat 152 ||||||||||||||||||||||| Sbjct: 36714 atttctgagttctctgcagacat 36736
>gb|AC148026.2| Homo sapiens BAC clone RP11-625I24 from 2, complete sequence Length = 159856 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 130 atttctgagttctctgcagacat 152 ||||||||||||||||||||||| Sbjct: 26740 atttctgagttctctgcagacat 26762
>gb|AC008268.3|AC008268 Homo sapiens BAC clone RP11-34G16 from 2, complete sequence Length = 187883 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 130 atttctgagttctctgcagacat 152 ||||||||||||||||||||||| Sbjct: 112071 atttctgagttctctgcagacat 112093
>gb|AC016967.24| Homo sapiens 3 BAC RP11-72E23 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 140971 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 206 tttacaacaattacaatttgcctca 230 |||||| |||||||||||||||||| Sbjct: 35437 tttacaccaattacaatttgcctca 35461
>emb|AL928568.17| Mouse DNA sequence from clone RP23-396N8 on chromosome 2, complete sequence Length = 98566 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 131 tttctgagttctctgcagaca 151 ||||||||||||||||||||| Sbjct: 76897 tttctgagttctctgcagaca 76917
>ref|XM_522091.1| PREDICTED: Pan troglodytes similar to Fibroblast growth factor-4 precursor (FGF-4) (Heparin secretory transforming protein) (HST-1) (HST) (Transforming protein KS3) (HBGF-4) (LOC466692), mRNA Length = 888 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 455 agccaagagtgtctgcgtcc 474 |||||||||||||||||||| Sbjct: 518 agccaagagtgtctgcgtcc 499
>ref|XM_846651.1| PREDICTED: Canis familiaris similar to Mammalian ependymin related protein-1 precursor (MERP-1) (UCC1 protein) (LOC609403), mRNA Length = 1797 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 128 aaatttctgagttctctgcagaca 151 |||||| ||||||||||||||||| Sbjct: 904 aaatttttgagttctctgcagaca 927
>emb|Z66567.1|CEZK455 Caenorhabditis elegans Cosmid ZK455, complete sequence Length = 33904 Score = 40.1 bits (20), Expect = 8.2 Identities = 38/44 (86%) Strand = Plus / Minus Query: 556 acagccttcactccctgaagcattggaccctttgcagcccaatc 599 |||||||| ||||| || || | ||| ||||||||||||||||| Sbjct: 22936 acagccttgactccttggaggaatggcccctttgcagcccaatc 22893
>gb|AC162933.2| Mus musculus BAC clone RP23-148J22 from chromosome 12, complete sequence Length = 236972 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 288 tggtaggataccaccatggg 307 |||||||||||||||||||| Sbjct: 12065 tggtaggataccaccatggg 12046
>ref|XM_791013.1| PREDICTED: Strongylocentrotus purpuratus similar to CG17486-PA.3 (LOC591452), partial mRNA Length = 2166 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 89 gaaaaccaggccatgatcct 108 |||||||||||||||||||| Sbjct: 1613 gaaaaccaggccatgatcct 1632
>gb|AC126957.4| Rattus norvegicus 1 BAC CH230-12B13 (Children's Hospital Oakland Research Institute) complete sequence Length = 215911 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 187 agacttactaaagaaactgt 206 |||||||||||||||||||| Sbjct: 124564 agacttactaaagaaactgt 124583
>emb|BX572600.1| Rhodopseudomonas palustris CGA009 complete genome; segment 8/16 Length = 349640 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 421 ggaagctgaatggtgtagcg 440 |||||||||||||||||||| Sbjct: 27521 ggaagctgaatggtgtagcg 27540
>emb|CR456683.7| Zebrafish DNA sequence from clone CH211-39I13 in linkage group 13, complete sequence Length = 166196 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 150 catctcagatgttatttgag 169 |||||||||||||||||||| Sbjct: 31051 catctcagatgttatttgag 31070
>gb|AC151956.5| Medicago truncatula clone mth2-52p17, complete sequence Length = 120704 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 529 tgaatcctctcaaagctctt 548 |||||||||||||||||||| Sbjct: 1375 tgaatcctctcaaagctctt 1394
>gb|AC073372.9| Homo sapiens chromosome 11 clone RP11-500D4, complete sequence Length = 180504 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 125 tcaaaatttctgagttctct 144 |||||||||||||||||||| Sbjct: 20051 tcaaaatttctgagttctct 20032
>ref|NM_077497.2| Caenorhabditis elegans ACOnitase family member (aco-1) (aco-1) mRNA, complete cds Length = 3074 Score = 40.1 bits (20), Expect = 8.2 Identities = 38/44 (86%) Strand = Plus / Minus Query: 556 acagccttcactccctgaagcattggaccctttgcagcccaatc 599 |||||||| ||||| || || | ||| ||||||||||||||||| Sbjct: 2382 acagccttgactccttggaggaatggcccctttgcagcccaatc 2339
>dbj|AP006345.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-186D19, complete sequence Length = 150214 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 455 agccaagagtgtctgcgtcc 474 |||||||||||||||||||| Sbjct: 34759 agccaagagtgtctgcgtcc 34778
>gb|J02986.1|HUMHST Homo sapiens transforming protein (FGF4) gene, complete cds; and unknown gene Length = 6616 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 455 agccaagagtgtctgcgtcc 474 |||||||||||||||||||| Sbjct: 3068 agccaagagtgtctgcgtcc 3049
>gb|AC092927.5| Homo sapiens 3 BAC RP11-791I24 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 179542 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 204 tgtttacaacaattacaatt 223 |||||||||||||||||||| Sbjct: 102447 tgtttacaacaattacaatt 102428
>gb|AC087593.6| Homo sapiens chromosome 15, clone RP11-247E14, complete sequence Length = 124394 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 383 taacatcttggccaggcttg 402 |||||||||||||||||||| Sbjct: 101509 taacatcttggccaggcttg 101490
>emb|BX005226.10| Zebrafish DNA sequence from clone CH211-175P12 in linkage group 22, complete sequence Length = 176642 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 206 tttacaacaattacaatttg 225 |||||||||||||||||||| Sbjct: 45542 tttacaacaattacaatttg 45523
>emb|CT025545.28| Mouse DNA sequence from clone RP24-88C18 on chromosome 12, complete sequence Length = 266295 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 288 tggtaggataccaccatggg 307 |||||||||||||||||||| Sbjct: 196579 tggtaggataccaccatggg 196598
>emb|BX901968.13| Zebrafish DNA sequence from clone DKEYP-59C12 in linkage group 18, complete sequence Length = 126945 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 292 aggataccaccatgggtgtagtat 315 |||||| ||||||||||||||||| Sbjct: 55898 aggataacaccatgggtgtagtat 55875
>dbj|AP004106.1| Nansenia ardesiaca mitochondrial DNA, complete genome Length = 16620 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 518 gattgctccggtgaatcctc 537 |||||||||||||||||||| Sbjct: 11303 gattgctccggtgaatcctc 11284
>dbj|AP001888.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-300I6, complete sequence Length = 161505 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 455 agccaagagtgtctgcgtcc 474 |||||||||||||||||||| Sbjct: 136055 agccaagagtgtctgcgtcc 136074
>dbj|AP002759.3| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-686G23, complete sequences Length = 177933 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 tcaaaatttctgagttctct 144 |||||||||||||||||||| Sbjct: 97243 tcaaaatttctgagttctct 97262
>gb|K02064.1|BOVCOX Bovine cytochrome c oxidase subunit IV mRNA, partial cds Length = 416 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 315 tgcaatctccacctcggtgt 334 |||||||||||||||||||| Sbjct: 71 tgcaatctccacctcggtgt 90 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,186,052 Number of Sequences: 3902068 Number of extensions: 5186052 Number of successful extensions: 105239 Number of sequences better than 10.0: 68 Number of HSP's better than 10.0 without gapping: 67 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 105023 Number of HSP's gapped (non-prelim): 214 length of query: 606 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 583 effective length of database: 17,143,297,704 effective search space: 9994542561432 effective search space used: 9994542561432 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)