Clone Information

BLAST Search Result

Clone Name	rbags10b01
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|AF262215.1\| Oryza sativa guanine nucleotide-exchange protein ...	406	e-110
2	gb\|DP000009.1\| Oryza sativa (japonica cultivar-group) chromosome 3	398	e-108
3	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	398	e-108
4	gb\|AC118672.3\| Genomic sequence for Oryza sativa, Nipponbare str...	398	e-108
5	dbj\|AK119229.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	391	e-105
6	dbj\|AK068209.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	303	4e-79
7	gb\|AY110856.1\| Zea mays CL42523_1 mRNA sequence	236	8e-59
8	gb\|DP000012.1\| Macropus eugenii target 1 genomic scaffold	44	0.62
9	gb\|AC145184.3\| Macropus eugenii clone ME_KBa-71M6, complete sequ...	44	0.62
10	gb\|AC146539.2\| Gasterosteus aculeatus clone CH213-129C17, comple...	42	2.4
11	gb\|AC145141.2\| Homo sapiens chromosome 5 clone RP11-1364K7, comp...	42	2.4
12	gb\|AC146690.1\| Gasterosteus aculeatus clone CH213-156J22, comple...	42	2.4
13	gb\|AC139492.2\| Homo sapiens chromosome 5 clone RP11-842C12, comp...	42	2.4
14	gb\|AC138908.3\| Homo sapiens chromosome 5 clone RP11-615D2, compl...	42	2.4
15	gb\|AC009780.12\| Homo sapiens 12 BAC RP11-1C11 (Roswell Park Canc...	42	2.4
16	gb\|AC092361.3\| Homo sapiens chromosome 5 clone RP11-356O21, comp...	42	2.4
17	gb\|AC008851.7\| Homo sapiens chromosome 5 clone CTD-2173D20, comp...	42	2.4
18	ref\|XM_679956.1\| PREDICTED: Danio rerio similar to synaptonemal ...	42	2.4
19	ref\|XM_691301.1\| PREDICTED: Danio rerio similar to Synaptonemal ...	42	2.4
20	gb\|AC090811.5\| Homo sapiens chromosome 8, clone RP11-55J5, compl...	42	2.4
21	emb\|AL929345.15\| Zebrafish DNA sequence from clone DKEY-211H10 i...	42	2.4
22	gb\|AC138850.2\| Homo sapiens chromosome 5 clone RP11-1308P14, com...	42	2.4
23	gb\|AC138832.2\| Homo sapiens chromosome 5 clone RP11-1174L13, com...	42	2.4
24	gb\|AC138828.2\| Homo sapiens chromosome 5 clone RP11-1156J4, comp...	42	2.4
25	gb\|AC108106.4\| Homo sapiens chromosome 5 clone RP11-214M1, compl...	42	2.4
26	gb\|AC138948.2\| Homo sapiens chromosome 5 clone RP11-800G17, comp...	42	2.4
27	gb\|AC138854.2\| Homo sapiens chromosome 5 clone RP11-1330D14, com...	42	2.4
28	gb\|AC138817.2\| Homo sapiens chromosome 5 clone RP11-1099E10, com...	42	2.4
29	emb\|AL954838.14\| Zebrafish DNA sequence from clone DKEY-12B15 in...	42	2.4
30	gb\|AC111028.10\| Mus musculus chromosome 8, clone RP23-221P20, co...	40	9.7
31	gb\|AC110235.13\| Mus musculus chromosome 9, clone RP23-100M12, co...	40	9.7
32	gb\|AC139206.5\| Mus musculus chromosome 1, clone RP23-82P18, comp...	40	9.7
33	gb\|AC112161.9\| Mus Musculus chromosome 9 BAC clone MGS1-117K9 ES...	40	9.7
34	emb\|Y18367.1\|BFY18367 Branchiostoma floridae gene encoding 3-alp...	40	9.7
35	gb\|AC162692.2\| Mus musculus chromosome 1, clone RP23-445K23, com...	40	9.7
36	gb\|AC094080.4\| Homo sapiens chromosome 5 clone CTB-77K22, comple...	40	9.7
37	gb\|AC098565.3\| Oryza sativa chromosome 10 clone OSJNBa0028C16, c...	40	9.7
38	gb\|AC010292.8\| Homo sapiens chromosome 5 clone CTB-131H22, compl...	40	9.7
39	gb\|AC161372.2\| Mus musculus BAC clone RP23-326G14 from chromosom...	40	9.7
40	gb\|AE010300.1\| Leptospira interrogans serovar lai str. 56601 chr...	40	9.7
41	dbj\|AP008216.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	9.7
42	gb\|AC092162.3\| Homo sapiens BAC clone RP11-632P5 from 2, complet...	40	9.7
43	gb\|AE016823.1\| Leptospira interrogans serovar Copenhageni str. F...	40	9.7
44	gb\|AC117804.7\| Mus musculus chromosome 8, clone RP24-565N9, comp...	40	9.7
45	gb\|AE016959.3\| Oryza sativa (japonica cultivar-group) chromosome...	40	9.7
46	gb\|AC123862.5\| Mus musculus BAC clone RP23-356A24 from 16, compl...	40	9.7
47	gb\|CP000034.1\| Shigella dysenteriae Sd197, complete genome	40	9.7
48	emb\|AL513470.8\| Mouse DNA sequence from clone RP21-464E5 on chro...	40	9.7

>gb|AF262215.1| Oryza sativa guanine nucleotide-exchange protein GEP2 (GEP2) mRNA,
            partial cds
          Length = 5678

 Score =  406 bits (205), Expect = e-110
 Identities = 438/514 (85%), Gaps = 5/514 (0%)
 Strand = Plus / Minus

                                                                        
Query: 198  caaagaataacttacatgtggagggtatactatatcacag----ggtgcttcacatcagc 253
            |||||||||||||||||||||||  |||||||||| ||||    || |||   |||||||
Sbjct: 5440 caaagaataacttacatgtggaga-tatactatataacagatatggggctcagcatcagc 5382

                                                                        
Query: 254  aggactgaagcacgattgggccaacccaagtgctgaacatatcactcaaggccacctgca 313
            |||  ||||| || |  ||||||||||||||||| |||||||||||||| ||||||||||
Sbjct: 5381 aggtttgaagaacaaccgggccaacccaagtgctaaacatatcactcaatgccacctgca 5322

                                                                        
Query: 314  cttcgcctgaaccatgctcacaactgatgagaccagctagtagggggaagaactggccaa 373
            |||||| ||||||||| || ||||| || |||||||| || |||||||||||||||||||
Sbjct: 5321 cttcgcttgaaccatgttcgcaacttatcagaccagcaagaagggggaagaactggccaa 5262

                                                                        
Query: 374  ggttcttctcgaacgatgagtcgccgagaccgctgatagcttgcaatgttgagacaacaa 433
            ||||||||||||| |||||||| || || || |||||||||||||| |||||||||||||
Sbjct: 5261 ggttcttctcgaaagatgagtcaccaaggccactgatagcttgcaaggttgagacaacaa 5202

                                                                        
Query: 434  gcggtgccctggctgcaagctctctccgctttgacgaaccaaccggaataagccaatggc 493
            | ||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||| |
Sbjct: 5201 gaggtgcccgggctgcaagctctctccgctttgaagaaccgaccggaataagccaatgac 5142

                                                                        
Query: 494  caagtggctgtataccgccagaaaggtgagcaggccttgctgtgctcaagtatacctcaa 553
            ||||||||||   | | |||||||| ||||  ||  |||| ||||||| ||| |||||||
Sbjct: 5141 caagtggctgcggagcaccagaaagctgagatgggtttgcagtgctcaggtacacctcaa 5082

                                                                        
Query: 554  gaacctccttgcaaagtccaacaaggtgggtttcgacctctaagctcccttcatctgaag 613
            | |||||||| || |  |||||||||||| |||| |||||||  ||||  ||||  | ||
Sbjct: 5081 ggacctccttacataagccaacaaggtggctttccacctctacactcctctcattgggag 5022

                                                                        
Query: 614  ctctgtccaagaatatattctggaggatagtgaggcacaactgatacgactcgttctcaa 673
             |||||||||| | || ||||| |||||||| | |||||||||||||||||||||||| |
Sbjct: 5021 atctgtccaagcaaatgttctgcaggatagtcaagcacaactgatacgactcgttctcca 4962

                                              
Query: 674  ggcgtagtaatggcgggtcctgcatttgggtcat 707
            ||||||  || || ||||||||||||||||||||
Sbjct: 4961 ggcgtaacaaaggtgggtcctgcatttgggtcat 4928

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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  398 bits (201), Expect = e-108
 Identities = 437/514 (85%), Gaps = 5/514 (0%)
 Strand = Plus / Plus

                                                                           
Query: 198     caaagaataacttacatgtggagggtatactatatcacag----ggtgcttcacatcagc 253
               |||| ||||||||||||||||| | |||||||||| ||||    || |||   |||||||
Sbjct: 7724572 caaataataacttacatgtgga-gatatactatataacagatatggggctcagcatcagc 7724630

                                                                           
Query: 254     aggactgaagcacgattgggccaacccaagtgctgaacatatcactcaaggccacctgca 313
               |||  ||||| || |  ||||||||||||||||| |||||||||||||| ||||||||||
Sbjct: 7724631 aggtttgaagaacaaccgggccaacccaagtgctaaacatatcactcaatgccacctgca 7724690

                                                                           
Query: 314     cttcgcctgaaccatgctcacaactgatgagaccagctagtagggggaagaactggccaa 373
               |||||| ||||||||| || ||||| || |||||||| || |||||||||||||||||||
Sbjct: 7724691 cttcgcttgaaccatgttcgcaacttatcagaccagcaagaagggggaagaactggccaa 7724750

                                                                           
Query: 374     ggttcttctcgaacgatgagtcgccgagaccgctgatagcttgcaatgttgagacaacaa 433
               ||||||||||||| |||||||| || || || |||||||||||||| |||||||||||||
Sbjct: 7724751 ggttcttctcgaaagatgagtcaccaaggccactgatagcttgcaaggttgagacaacaa 7724810

                                                                           
Query: 434     gcggtgccctggctgcaagctctctccgctttgacgaaccaaccggaataagccaatggc 493
               | ||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||| |
Sbjct: 7724811 gaggtgcccgggctgcaagctctctccgctttgaagaaccgaccggaataagccaatgac 7724870

                                                                           
Query: 494     caagtggctgtataccgccagaaaggtgagcaggccttgctgtgctcaagtatacctcaa 553
               ||||||||||   | | |||||||| ||||  ||  |||| ||||||| ||| |||||||
Sbjct: 7724871 caagtggctgcggagcaccagaaagctgagatgggtttgcagtgctcaggtacacctcaa 7724930

                                                                           
Query: 554     gaacctccttgcaaagtccaacaaggtgggtttcgacctctaagctcccttcatctgaag 613
               | |||||||| || |  |||||||||||| |||| |||||||  ||||  ||||  | ||
Sbjct: 7724931 ggacctccttacataagccaacaaggtggctttccacctctacactcctctcattgggag 7724990

                                                                           
Query: 614     ctctgtccaagaatatattctggaggatagtgaggcacaactgatacgactcgttctcaa 673
                |||||||||| | || ||||| |||||||| | |||||||||||||||||||||||| |
Sbjct: 7724991 atctgtccaagcaaatgttctgcaggatagtcaagcacaactgatacgactcgttctcca 7725050

                                                 
Query: 674     ggcgtagtaatggcgggtcctgcatttgggtcat 707
               ||||||  || || ||||||||||||||||||||
Sbjct: 7725051 ggcgtaacaaaggtgggtcctgcatttgggtcat 7725084

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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  398 bits (201), Expect = e-108
 Identities = 437/514 (85%), Gaps = 5/514 (0%)
 Strand = Plus / Plus

                                                                           
Query: 198     caaagaataacttacatgtggagggtatactatatcacag----ggtgcttcacatcagc 253
               |||| ||||||||||||||||| | |||||||||| ||||    || |||   |||||||
Sbjct: 7722407 caaataataacttacatgtgga-gatatactatataacagatatggggctcagcatcagc 7722465

                                                                           
Query: 254     aggactgaagcacgattgggccaacccaagtgctgaacatatcactcaaggccacctgca 313
               |||  ||||| || |  ||||||||||||||||| |||||||||||||| ||||||||||
Sbjct: 7722466 aggtttgaagaacaaccgggccaacccaagtgctaaacatatcactcaatgccacctgca 7722525

                                                                           
Query: 314     cttcgcctgaaccatgctcacaactgatgagaccagctagtagggggaagaactggccaa 373
               |||||| ||||||||| || ||||| || |||||||| || |||||||||||||||||||
Sbjct: 7722526 cttcgcttgaaccatgttcgcaacttatcagaccagcaagaagggggaagaactggccaa 7722585

                                                                           
Query: 374     ggttcttctcgaacgatgagtcgccgagaccgctgatagcttgcaatgttgagacaacaa 433
               ||||||||||||| |||||||| || || || |||||||||||||| |||||||||||||
Sbjct: 7722586 ggttcttctcgaaagatgagtcaccaaggccactgatagcttgcaaggttgagacaacaa 7722645

                                                                           
Query: 434     gcggtgccctggctgcaagctctctccgctttgacgaaccaaccggaataagccaatggc 493
               | ||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||| |
Sbjct: 7722646 gaggtgcccgggctgcaagctctctccgctttgaagaaccgaccggaataagccaatgac 7722705

                                                                           
Query: 494     caagtggctgtataccgccagaaaggtgagcaggccttgctgtgctcaagtatacctcaa 553
               ||||||||||   | | |||||||| ||||  ||  |||| ||||||| ||| |||||||
Sbjct: 7722706 caagtggctgcggagcaccagaaagctgagatgggtttgcagtgctcaggtacacctcaa 7722765

                                                                           
Query: 554     gaacctccttgcaaagtccaacaaggtgggtttcgacctctaagctcccttcatctgaag 613
               | |||||||| || |  |||||||||||| |||| |||||||  ||||  ||||  | ||
Sbjct: 7722766 ggacctccttacataagccaacaaggtggctttccacctctacactcctctcattgggag 7722825

                                                                           
Query: 614     ctctgtccaagaatatattctggaggatagtgaggcacaactgatacgactcgttctcaa 673
                |||||||||| | || ||||| |||||||| | |||||||||||||||||||||||| |
Sbjct: 7722826 atctgtccaagcaaatgttctgcaggatagtcaagcacaactgatacgactcgttctcca 7722885

                                                 
Query: 674     ggcgtagtaatggcgggtcctgcatttgggtcat 707
               ||||||  || || ||||||||||||||||||||
Sbjct: 7722886 ggcgtaacaaaggtgggtcctgcatttgggtcat 7722919

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>gb|AC118672.3| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBb0078P24, from chromosome 3, complete sequence
          Length = 146930

 Score =  398 bits (201), Expect = e-108
 Identities = 437/514 (85%), Gaps = 5/514 (0%)
 Strand = Plus / Minus

                                                                          
Query: 198    caaagaataacttacatgtggagggtatactatatcacag----ggtgcttcacatcagc 253
              |||| ||||||||||||||||| | |||||||||| ||||    || |||   |||||||
Sbjct: 128222 caaataataacttacatgtgga-gatatactatataacagatatggggctcagcatcagc 128164

                                                                          
Query: 254    aggactgaagcacgattgggccaacccaagtgctgaacatatcactcaaggccacctgca 313
              |||  ||||| || |  ||||||||||||||||| |||||||||||||| ||||||||||
Sbjct: 128163 aggtttgaagaacaaccgggccaacccaagtgctaaacatatcactcaatgccacctgca 128104

                                                                          
Query: 314    cttcgcctgaaccatgctcacaactgatgagaccagctagtagggggaagaactggccaa 373
              |||||| ||||||||| || ||||| || |||||||| || |||||||||||||||||||
Sbjct: 128103 cttcgcttgaaccatgttcgcaacttatcagaccagcaagaagggggaagaactggccaa 128044

                                                                          
Query: 374    ggttcttctcgaacgatgagtcgccgagaccgctgatagcttgcaatgttgagacaacaa 433
              ||||||||||||| |||||||| || || || |||||||||||||| |||||||||||||
Sbjct: 128043 ggttcttctcgaaagatgagtcaccaaggccactgatagcttgcaaggttgagacaacaa 127984

                                                                          
Query: 434    gcggtgccctggctgcaagctctctccgctttgacgaaccaaccggaataagccaatggc 493
              | ||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||| |
Sbjct: 127983 gaggtgcccgggctgcaagctctctccgctttgaagaaccgaccggaataagccaatgac 127924

                                                                          
Query: 494    caagtggctgtataccgccagaaaggtgagcaggccttgctgtgctcaagtatacctcaa 553
              ||||||||||   | | |||||||| ||||  ||  |||| ||||||| ||| |||||||
Sbjct: 127923 caagtggctgcggagcaccagaaagctgagatgggtttgcagtgctcaggtacacctcaa 127864

                                                                          
Query: 554    gaacctccttgcaaagtccaacaaggtgggtttcgacctctaagctcccttcatctgaag 613
              | |||||||| || |  |||||||||||| |||| |||||||  ||||  ||||  | ||
Sbjct: 127863 ggacctccttacataagccaacaaggtggctttccacctctacactcctctcattgggag 127804

                                                                          
Query: 614    ctctgtccaagaatatattctggaggatagtgaggcacaactgatacgactcgttctcaa 673
               |||||||||| | || ||||| |||||||| | |||||||||||||||||||||||| |
Sbjct: 127803 atctgtccaagcaaatgttctgcaggatagtcaagcacaactgatacgactcgttctcca 127744

                                                
Query: 674    ggcgtagtaatggcgggtcctgcatttgggtcat 707
              ||||||  || || ||||||||||||||||||||
Sbjct: 127743 ggcgtaacaaaggtgggtcctgcatttgggtcat 127710

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>dbj|AK119229.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-101-A10, full
            insert sequence
          Length = 1360

 Score =  391 bits (197), Expect = e-105
 Identities = 436/514 (84%), Gaps = 5/514 (0%)
 Strand = Plus / Minus

                                                                        
Query: 198  caaagaataacttacatgtggagggtatactatatcacag----ggtgcttcacatcagc 253
            |||| ||||||||||||||||| | |||||||||| ||||    || |||   |||||||
Sbjct: 1147 caaataataacttacatgtgga-gatatactatataacagatatggggctcagcatcagc 1089

                                                                        
Query: 254  aggactgaagcacgattgggccaacccaagtgctgaacatatcactcaaggccacctgca 313
            |||  ||||| || |  ||||||||||||||||| |||||||||||||| ||||||||||
Sbjct: 1088 aggtttgaagaacaaccgggccaacccaagtgctaaacatatcactcaatgccacctgca 1029

                                                                        
Query: 314  cttcgcctgaaccatgctcacaactgatgagaccagctagtagggggaagaactggccaa 373
            |||||| ||| ||||| || ||||| || |||||||| || |||||||||||||||||||
Sbjct: 1028 cttcgcttgagccatgttcgcaacttatcagaccagcaagaagggggaagaactggccaa 969

                                                                        
Query: 374  ggttcttctcgaacgatgagtcgccgagaccgctgatagcttgcaatgttgagacaacaa 433
            ||||||||||||| |||||||| || || || |||||||||||||| |||||||||||||
Sbjct: 968  ggttcttctcgaaagatgagtcaccaaggccactgatagcttgcaaggttgagacaacaa 909

                                                                        
Query: 434  gcggtgccctggctgcaagctctctccgctttgacgaaccaaccggaataagccaatggc 493
            | ||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||| |
Sbjct: 908  gaggtgcccgggctgcaagctctctccgctttgaagaaccgaccggaataagccaatgac 849

                                                                        
Query: 494  caagtggctgtataccgccagaaaggtgagcaggccttgctgtgctcaagtatacctcaa 553
            ||||||||||   | | |||||||| ||||  ||  |||| ||||||| ||| |||||||
Sbjct: 848  caagtggctgcggagcaccagaaagctgagatgggtttgcagtgctcaggtacacctcaa 789

                                                                        
Query: 554  gaacctccttgcaaagtccaacaaggtgggtttcgacctctaagctcccttcatctgaag 613
            | |||||||| || |  |||||||||||| |||| |||||||  ||||  ||||  | ||
Sbjct: 788  ggacctccttacataagccaacaaggtggctttccacctctacactcctctcattgggag 729

                                                                        
Query: 614  ctctgtccaagaatatattctggaggatagtgaggcacaactgatacgactcgttctcaa 673
             |||||||||| | || ||||| |||||||| | |||||||||||||||||||||||| |
Sbjct: 728  atctgtccaagcaaatgttctgcaggatagtcaagcacaactgatacgactcgttctcca 669

                                              
Query: 674  ggcgtagtaatggcgggtcctgcatttgggtcat 707
            ||||||  || || ||||||||||||||||||||
Sbjct: 668  ggcgtaacaaaggtgggtcctgcatttgggtcat 635

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>dbj|AK068209.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013149H23, full
            insert sequence
          Length = 2574

 Score =  303 bits (153), Expect = 4e-79
 Identities = 258/293 (88%)
 Strand = Plus / Minus

                                                                        
Query: 271  gggccaacccaagtgctgaacatatcactcaaggccacctgcacttcgcctgaaccatgc 330
            ||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||||| 
Sbjct: 2403 gggccaacccaagtgctaaacatatcactcaatgccacctgcacttcgcttgaaccatgt 2344

                                                                        
Query: 331  tcacaactgatgagaccagctagtagggggaagaactggccaaggttcttctcgaacgat 390
            || ||||| || |||||||| || |||||||||||||||||||||||||||||||| |||
Sbjct: 2343 tcgcaacttatcagaccagcaagaagggggaagaactggccaaggttcttctcgaaagat 2284

                                                                        
Query: 391  gagtcgccgagaccgctgatagcttgcaatgttgagacaacaagcggtgccctggctgca 450
            ||||| || || || |||||||||||||| |||||||||||||| ||||||| |||||||
Sbjct: 2283 gagtcaccaaggccactgatagcttgcaaggttgagacaacaagaggtgcccgggctgca 2224

                                                                        
Query: 451  agctctctccgctttgacgaaccaaccggaataagccaatggccaagtggctgtataccg 510
            ||||||| ||||||||| ||||| ||||||||||||||||| |||||||||||   | | 
Sbjct: 2223 agctctccccgctttgaagaaccgaccggaataagccaatgaccaagtggctgcggagca 2164

                                                                 
Query: 511  ccagaaaggtgagcaggccttgctgtgctcaagtatacctcaagaacctcctt 563
            |||||||| ||||  ||  |||| ||||||| ||| |||||||| ||||||||
Sbjct: 2163 ccagaaagctgagatgggtttgcagtgctcaggtacacctcaaggacctcctt 2111

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>gb|AY110856.1| Zea mays CL42523_1 mRNA sequence
          Length = 826

 Score =  236 bits (119), Expect = 8e-59
 Identities = 269/319 (84%)
 Strand = Plus / Minus

                                                                       
Query: 247 catcagcaggactgaagcacgattgggccaacccaagtgctgaacatatcactcaaggcc 306
           |||||||||||||| || |||| |||||||||||||||||||||||||||||||| ||||
Sbjct: 641 catcagcaggactggagaacgagtgggccaacccaagtgctgaacatatcactcagggcc 582

                                                                       
Query: 307 acctgcacttcgcctgaaccatgctcacaactgatgagaccagctagtagggggaagaac 366
           ||||| ||||| |  ||||||||||| || || ||||| ||||| || || || ||||||
Sbjct: 581 acctgtacttcactagaaccatgctcgcagcttatgagcccagcgagaagaggaaagaac 522

                                                                       
Query: 367 tggccaaggttcttctcgaacgatgagtcgccgagaccgctgatagcttgcaatgttgag 426
           |||| ||||||||||||||| | |||||| || || ||||||||||||||||  ||||||
Sbjct: 521 tggcgaaggttcttctcgaaagctgagtcacctagtccgctgatagcttgcagggttgag 462

                                                                       
Query: 427 acaacaagcggtgccctggctgcaagctctctccgctttgacgaaccaaccggaataagc 486
           ||| |||| ||||| || || ||||| || || || || || |||||| | || ||||||
Sbjct: 461 acaccaagaggtgctcttgccgcaagttcccttcgtttcgatgaaccaccagggataagc 402

                                                                       
Query: 487 caatggccaagtggctgtataccgccagaaaggtgagcaggccttgctgtgctcaagtat 546
           |||||||| || |||||| | || |  ||| | |||| ||| ||||||||||||||||||
Sbjct: 401 caatggcctagcggctgtgtgccactggaaggctgagaaggtcttgctgtgctcaagtat 342

                              
Query: 547 acctcaagaacctccttgc 565
           |||||||| ||||||||||
Sbjct: 341 acctcaaggacctccttgc 323



 Score = 87.7 bits (44), Expect = 5e-14
 Identities = 80/92 (86%)
 Strand = Plus / Minus

                                                                       
Query: 616 ctgtccaagaatatattctggaggatagtgaggcacaactgatacgactcgttctcaagg 675
           |||||||  ||||| ||||| |||||| ||||||||| ||| |||||||| |||||||||
Sbjct: 269 ctgtccagaaatatgttctgaaggatactgaggcacagctggtacgactcattctcaagg 210

                                           
Query: 676 cgtagtaatggcgggtcctgcatttgggtcat 707
           ||||  ||||||||||||||||| || |||||
Sbjct: 209 cgtaacaatggcgggtcctgcatctgtgtcat 178

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>gb|DP000012.1| Macropus eugenii target 1 genomic scaffold
          Length = 1996640

 Score = 44.1 bits (22), Expect = 0.62
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 71      aaaagggaaaaggatctacatg 92
               ||||||||||||||||||||||
Sbjct: 1935552 aaaagggaaaaggatctacatg 1935531

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>gb|AC145184.3| Macropus eugenii clone ME_KBa-71M6, complete sequence
          Length = 137074

 Score = 44.1 bits (22), Expect = 0.62
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 71    aaaagggaaaaggatctacatg 92
             ||||||||||||||||||||||
Sbjct: 75986 aaaagggaaaaggatctacatg 75965

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>gb|AC146539.2| Gasterosteus aculeatus clone CH213-129C17, complete sequence
          Length = 202686

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 338   tgatgagaccagctagtaggg 358
             |||||||||||||||||||||
Sbjct: 89507 tgatgagaccagctagtaggg 89527

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>gb|AC145141.2| Homo sapiens chromosome 5 clone RP11-1364K7, complete sequence
          Length = 163257

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 281    aagtgctgaacatatcactca 301
              |||||||||||||||||||||
Sbjct: 155109 aagtgctgaacatatcactca 155089

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>gb|AC146690.1| Gasterosteus aculeatus clone CH213-156J22, complete sequence
          Length = 166930

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 338   tgatgagaccagctagtaggg 358
             |||||||||||||||||||||
Sbjct: 60182 tgatgagaccagctagtaggg 60202

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>gb|AC139492.2| Homo sapiens chromosome 5 clone RP11-842C12, complete sequence
          Length = 184826

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 281    aagtgctgaacatatcactca 301
              |||||||||||||||||||||
Sbjct: 178615 aagtgctgaacatatcactca 178595

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>gb|AC138908.3| Homo sapiens chromosome 5 clone RP11-615D2, complete sequence
          Length = 201419

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 281    aagtgctgaacatatcactca 301
              |||||||||||||||||||||
Sbjct: 148996 aagtgctgaacatatcactca 149016

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>gb|AC009780.12| Homo sapiens 12 BAC RP11-1C11 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 144454

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 125   ggactaaaataatgaacacaa 145
             |||||||||||||||||||||
Sbjct: 71327 ggactaaaataatgaacacaa 71307

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>gb|AC092361.3| Homo sapiens chromosome 5 clone RP11-356O21, complete sequence
          Length = 166133

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 281   aagtgctgaacatatcactca 301
             |||||||||||||||||||||
Sbjct: 83557 aagtgctgaacatatcactca 83577

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>gb|AC008851.7| Homo sapiens chromosome 5 clone CTD-2173D20, complete sequence
          Length = 130416

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 281    aagtgctgaacatatcactca 301
              |||||||||||||||||||||
Sbjct: 129642 aagtgctgaacatatcactca 129662

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>ref|XM_679956.1| PREDICTED: Danio rerio similar to synaptonemal complex lateral
            element protein (LOC557000), mRNA
          Length = 5163

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 55   agaaaaccaagagcataaaag 75
            |||||||||||||||||||||
Sbjct: 1577 agaaaaccaagagcataaaag 1597

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>ref|XM_691301.1| PREDICTED: Danio rerio similar to Synaptonemal complex protein 2
            (SCP-2 protein) (Synaptonemal complex lateral element
            protein) (hsSCP2) (LOC567990), mRNA
          Length = 4629

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 55   agaaaaccaagagcataaaag 75
            |||||||||||||||||||||
Sbjct: 1043 agaaaaccaagagcataaaag 1063

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>gb|AC090811.5| Homo sapiens chromosome 8, clone RP11-55J5, complete sequence
          Length = 176418

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 62     caagagcataaaagggaaaag 82
              |||||||||||||||||||||
Sbjct: 127063 caagagcataaaagggaaaag 127043

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>emb|AL929345.15| Zebrafish DNA sequence from clone DKEY-211H10 in linkage group 23,
             complete sequence
          Length = 222615

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 55    agaaaaccaagagcataaaag 75
             |||||||||||||||||||||
Sbjct: 67452 agaaaaccaagagcataaaag 67432

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>gb|AC138850.2| Homo sapiens chromosome 5 clone RP11-1308P14, complete sequence
          Length = 188885

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 281   aagtgctgaacatatcactca 301
             |||||||||||||||||||||
Sbjct: 53920 aagtgctgaacatatcactca 53940

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>gb|AC138832.2| Homo sapiens chromosome 5 clone RP11-1174L13, complete sequence
          Length = 225384

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 281   aagtgctgaacatatcactca 301
             |||||||||||||||||||||
Sbjct: 57948 aagtgctgaacatatcactca 57928

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>gb|AC138828.2| Homo sapiens chromosome 5 clone RP11-1156J4, complete sequence
          Length = 184142

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 281    aagtgctgaacatatcactca 301
              |||||||||||||||||||||
Sbjct: 127788 aagtgctgaacatatcactca 127808

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>gb|AC108106.4| Homo sapiens chromosome 5 clone RP11-214M1, complete sequence
          Length = 160701

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 281    aagtgctgaacatatcactca 301
              |||||||||||||||||||||
Sbjct: 107633 aagtgctgaacatatcactca 107613

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>gb|AC138948.2| Homo sapiens chromosome 5 clone RP11-800G17, complete sequence
          Length = 172404

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 281    aagtgctgaacatatcactca 301
              |||||||||||||||||||||
Sbjct: 141777 aagtgctgaacatatcactca 141797

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>gb|AC138854.2| Homo sapiens chromosome 5 clone RP11-1330D14, complete sequence
          Length = 203368

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 281    aagtgctgaacatatcactca 301
              |||||||||||||||||||||
Sbjct: 118873 aagtgctgaacatatcactca 118893

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>gb|AC138817.2| Homo sapiens chromosome 5 clone RP11-1099E10, complete sequence
          Length = 185785

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 281    aagtgctgaacatatcactca 301
              |||||||||||||||||||||
Sbjct: 124323 aagtgctgaacatatcactca 124343

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>emb|AL954838.14| Zebrafish DNA sequence from clone DKEY-12B15 in linkage group 23,
             complete sequence
          Length = 268324

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 55    agaaaaccaagagcataaaag 75
             |||||||||||||||||||||
Sbjct: 78226 agaaaaccaagagcataaaag 78206

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>gb|AC111028.10| Mus musculus chromosome 8, clone RP23-221P20, complete sequence
          Length = 193256

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 246 acatcagcaggactgaagca 265
           ||||||||||||||||||||
Sbjct: 58  acatcagcaggactgaagca 77

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>gb|AC110235.13| Mus musculus chromosome 9, clone RP23-100M12, complete sequence
          Length = 220755

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 588   gacctctaagctcccttcat 607
             ||||||||||||||||||||
Sbjct: 56862 gacctctaagctcccttcat 56843

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>gb|AC139206.5| Mus musculus chromosome 1, clone RP23-82P18, complete sequence
          Length = 304494

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 623   agaatatattctggaggata 642
             ||||||||||||||||||||
Sbjct: 92812 agaatatattctggaggata 92793

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>gb|AC112161.9| Mus Musculus chromosome 9 BAC clone MGS1-117K9 ES cell line, Complete
             Sequence, complete sequence
          Length = 115135

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 588   gacctctaagctcccttcat 607
             ||||||||||||||||||||
Sbjct: 66828 gacctctaagctcccttcat 66847

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>emb|Y18367.1|BFY18367 Branchiostoma floridae gene encoding 3-alpha-hydroxysteroid
             dehydrogenase-like protein
          Length = 40753

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 516   aaggtgagcaggccttgctg 535
             ||||||||||||||||||||
Sbjct: 15932 aaggtgagcaggccttgctg 15951

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>gb|AC162692.2| Mus musculus chromosome 1, clone RP23-445K23, complete sequence
          Length = 181625

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 623   agaatatattctggaggata 642
             ||||||||||||||||||||
Sbjct: 42857 agaatatattctggaggata 42876

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>gb|AC094080.4| Homo sapiens chromosome 5 clone CTB-77K22, complete sequence
          Length = 118504

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 614    ctctgtccaagaatatattc 633
              ||||||||||||||||||||
Sbjct: 118104 ctctgtccaagaatatattc 118123

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>gb|AC098565.3| Oryza sativa chromosome 10 clone OSJNBa0028C16, complete sequence
          Length = 166757

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 53    gtagaaaaccaagagcataaaagg 76
             ||||||||| ||||||||||||||
Sbjct: 41143 gtagaaaactaagagcataaaagg 41166

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>gb|AC010292.8| Homo sapiens chromosome 5 clone CTB-131H22, complete sequence
          Length = 56767

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 614   ctctgtccaagaatatattc 633
             ||||||||||||||||||||
Sbjct: 20424 ctctgtccaagaatatattc 20443

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>gb|AC161372.2| Mus musculus BAC clone RP23-326G14 from chromosome 16, complete sequence
          Length = 208994

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 548    cctcaagaacctccttgcaa 567
              ||||||||||||||||||||
Sbjct: 155878 cctcaagaacctccttgcaa 155897

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>gb|AE010300.1| Leptospira interrogans serovar lai str. 56601 chromosome I, complete
               sequence
          Length = 4332241

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 132     aataatgaacacaacgaaat 151
               ||||||||||||||||||||
Sbjct: 3631100 aataatgaacacaacgaaat 3631081

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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 53      gtagaaaaccaagagcataaaagg 76
               ||||||||| ||||||||||||||
Sbjct: 3071511 gtagaaaactaagagcataaaagg 3071534

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>gb|AC092162.3| Homo sapiens BAC clone RP11-632P5 from 2, complete sequence
          Length = 155011

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 108   gacaccacttcccacaaggactaaaataatga 139
             ||||| |||||||| ||| |||||||||||||
Sbjct: 64312 gacacaacttcccaaaagtactaaaataatga 64343

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>gb|AE016823.1| Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130,
              chromosome I, complete sequence
          Length = 4277185

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 132    aataatgaacacaacgaaat 151
              ||||||||||||||||||||
Sbjct: 659706 aataatgaacacaacgaaat 659725

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>gb|AC117804.7| Mus musculus chromosome 8, clone RP24-565N9, complete sequence
          Length = 126486

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 246   acatcagcaggactgaagca 265
             ||||||||||||||||||||
Sbjct: 13770 acatcagcaggactgaagca 13751

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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 53      gtagaaaaccaagagcataaaagg 76
               ||||||||| ||||||||||||||
Sbjct: 3071432 gtagaaaactaagagcataaaagg 3071455

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>gb|AC123862.5| Mus musculus BAC clone RP23-356A24 from 16, complete sequence
          Length = 223030

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 548   cctcaagaacctccttgcaa 567
             ||||||||||||||||||||
Sbjct: 26153 cctcaagaacctccttgcaa 26172

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>gb|CP000034.1| Shigella dysenteriae Sd197, complete genome
          Length = 4369232

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 269    ttgggccaacccaagtgctgaaca 292
              |||| |||||||||||||||||||
Sbjct: 734155 ttggcccaacccaagtgctgaaca 734178

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>emb|AL513470.8| Mouse DNA sequence from clone RP21-464E5 on chromosome 1, complete
              sequence
          Length = 166333

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 623    agaatatattctggaggata 642
              ||||||||||||||||||||
Sbjct: 116200 agaatatattctggaggata 116219


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,689,528
Number of Sequences: 3902068
Number of extensions: 5689528
Number of successful extensions: 96457
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 96172
Number of HSP's gapped (non-prelim): 274
length of query: 707
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 684
effective length of database: 17,143,297,704
effective search space: 11726015629536
effective search space used: 11726015629536
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result