>POLG_PEMVC (Q01500) Genome polyprotein [Contains: P1 proteinase (N-terminal|
            protein); Helper component proteinase (EC 3.4.22.45)
            (HC-pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic
            inclusion protein (EC 3.6.1.-) (CI); 6 kDa protein 2
            (6K2); Viral ge
          Length = 3068

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 24/86 (27%), Positives = 45/86 (52%), Gaps = 5/86 (5%)
 Frame = +1

Query: 217  SQSI*ERSNTHSP*LQQLRKHLF*VVTVRREGFGSHIRYTADIMVK--LHRNIFRKFFDN 390
            S+S+ E+++T S  L+ L+++L  +  ++ +    H+     +M K  L  N     F  
Sbjct: 2270 SESVREQAHTSSWMLEVLKENLKAIAYMKSQLVTKHVVKGECMMFKQYLQENPRANEFFQ 2329

Query: 391  PYMFT---ECLNKMVFIKDITKFARI 459
            P M+      LNK  +IKDI K++++
Sbjct: 2330 PKMWAYGKSMLNKEAYIKDIMKYSKV 2355

>PURA_SPICI (P52150) Adenylosuccinate synthetase (EC 6.3.4.4) (IMP--aspartate|
           ligase) (AdSS) (AMPSase)
          Length = 435

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 27/106 (25%), Positives = 49/106 (46%), Gaps = 21/106 (19%)
 Frame = -1

Query: 450 KFGDIFDEDHFIETLRKHVR----------VVKELPE-NVSVQFDHNISSIPNMRT---- 316
           + GD+FDE  F++ L  +++          +VK+L + N+   F H    I ++ T    
Sbjct: 153 RLGDLFDEKGFLQKLENNLKFKNEVLQKFLIVKDLTKINLKRIFWHYFQQIKSLVTDTSI 212

Query: 315 ---KAFSSH-SYYLEKVLPQLLEL--GAVRIAPFSNRLANSVPSNI 196
               A  +H  +YL++    +L+L  G       SN  A+S+P  +
Sbjct: 213 LVDNAIHNHQKFYLKEAQGVMLDLDHGTYPFVTSSNPTASSIPVGV 258

>VD05_FOWPV (P21969) Protein FPV058|
          Length = 791

 Score = 30.0 bits (66), Expect = 7.0
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
 Frame = +1

Query: 388 NPYMFTECLNKMVFIKDITKFARITPNTIQ---MKSWADKSCIK*ACHSNSITNRN 546
           NP++    L ++VF  ++  F+  T   I+   +K   +   +  +C+SN I NRN
Sbjct: 543 NPFIANMHLKRVVFCSELPDFSCNTSKKIRSDNIKKLTEPCVVGRSCYSNKINNRN 598

>PURA_SALTY (P65882) Adenylosuccinate synthetase (EC 6.3.4.4) (IMP--aspartate|
           ligase) (AdSS) (AMPSase)
          Length = 431

 Score = 30.0 bits (66), Expect = 7.0
 Identities = 28/97 (28%), Positives = 48/97 (49%)
 Frame = -1

Query: 690 PSLLMASHSKKSGKRWVPCIRKRLTQSALPPSNGFLVIEANGGLNQQRISICDAVAVASL 511
           PS LM    K+   R +P +R+RL  S   P    L+++ +  L+  R     A A+ + 
Sbjct: 76  PSALM-KEMKELEDRGIP-VRERLLLSEACP----LILDYHVALDNAREKARGAKAIGTT 129

Query: 510 LNATLVSPAFHLNSVWRDSSKFGDIFDEDHFIETLRK 400
                + PA+  + V R   + GD+FD++ F E L++
Sbjct: 130 GRG--IGPAYE-DKVARRGLRVGDLFDKETFAEKLKE 163

>PURA_SALTI (P65883) Adenylosuccinate synthetase (EC 6.3.4.4) (IMP--aspartate|
           ligase) (AdSS) (AMPSase)
          Length = 431

 Score = 30.0 bits (66), Expect = 7.0
 Identities = 28/97 (28%), Positives = 48/97 (49%)
 Frame = -1

Query: 690 PSLLMASHSKKSGKRWVPCIRKRLTQSALPPSNGFLVIEANGGLNQQRISICDAVAVASL 511
           PS LM    K+   R +P +R+RL  S   P    L+++ +  L+  R     A A+ + 
Sbjct: 76  PSALM-KEMKELEDRGIP-VRERLLLSEACP----LILDYHVALDNAREKARGAKAIGTT 129

Query: 510 LNATLVSPAFHLNSVWRDSSKFGDIFDEDHFIETLRK 400
                + PA+  + V R   + GD+FD++ F E L++
Sbjct: 130 GRG--IGPAYE-DKVARRGLRVGDLFDKETFAEKLKE 163

>PURA_SALPA (Q5PL58) Adenylosuccinate synthetase (EC 6.3.4.4) (IMP--aspartate|
           ligase) (AdSS) (AMPSase)
          Length = 432

 Score = 30.0 bits (66), Expect = 7.0
 Identities = 28/97 (28%), Positives = 48/97 (49%)
 Frame = -1

Query: 690 PSLLMASHSKKSGKRWVPCIRKRLTQSALPPSNGFLVIEANGGLNQQRISICDAVAVASL 511
           PS LM    K+   R +P +R+RL  S   P    L+++ +  L+  R     A A+ + 
Sbjct: 77  PSALM-KEMKELEDRGIP-VRERLLLSEACP----LILDYHVALDNAREKARGAKAIGTT 130

Query: 510 LNATLVSPAFHLNSVWRDSSKFGDIFDEDHFIETLRK 400
                + PA+  + V R   + GD+FD++ F E L++
Sbjct: 131 GRG--IGPAYE-DKVARRGLRVGDLFDKETFAEKLKE 164

>DPH1_ASHGO (Q75AZ9) Diphthamide biosynthesis protein 1|
          Length = 426

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 21/59 (35%), Positives = 30/59 (50%)
 Frame = -1

Query: 432 DEDHFIETLRKHVRVVKELPENVSVQFDHNISSIPNMRTKAFSSHSYYLEKVLPQLLEL 256
           DEDH ++TL+K+      L    ++QF+  I SI   R K   S S+ L    PQ+  L
Sbjct: 176 DEDHLMKTLQKNFAKGTSLAVFGTIQFNPAIHSI---REKLLYSESHMLYITPPQIKPL 231


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,713,577
Number of Sequences: 219361
Number of extensions: 1888651
Number of successful extensions: 4960
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4960
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6882837918
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)