>MATK_WATAN (Q4H174) Maturase K (Intron maturase)|
          Length = 522

 Score = 32.7 bits (73), Expect = 1.1
 Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 16/95 (16%)
 Frame = +2

Query: 236 AKCNGKFLAVINQSVLLLL-----IFNVEHHHIGSWFVT----------HGFHFYA*FI* 370
           A+C GK + V   + LL+        N+  ++   W+ +          H FHF   F  
Sbjct: 293 ARCQGKAILVSKGTHLLMKKWKYNFVNLWQYYFHFWYQSYRIHINQLSKHSFHFXGYFSS 352

Query: 371 LLVNLIHLGMRLVSNTELMD-LTTKLNPAICTGFL 472
           LL N   +  +++ N+ L+D LTTK + A+   FL
Sbjct: 353 LLKNSSTVRNKMLDNSFLIDTLTTKFDTAVPVIFL 387

>LHX5_XENLA (P37137) LIM/homeobox protein Lhx5 (Homeobox protein LIM-5)|
           (xLIM-5) (xLIM-2A)
          Length = 402

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = -3

Query: 244 AFCLLSTQPGEVIRVTKNLRVCTDCHTAIKLISRI-THREIIVRDNNRFHCFED 86
           A C L   P +++R  +N     +C T +    ++ T  E+ + D N+F C ED
Sbjct: 65  AGCSLGISPSDLVRKARNKVFHLNCFTCMVCNKQLSTGEELYIIDENKFVCKED 118

>MATK_PILTE (Q4H186) Maturase K (Intron maturase)|
          Length = 522

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 16/95 (16%)
 Frame = +2

Query: 236 AKCNGKFLAVINQSVLLLL-----IFNVEHHHIGSWFVT----------HGFHFYA*FI* 370
           A+C GK + V   + LL+        N+  ++   W+ +          H FHF      
Sbjct: 293 ARCQGKAILVSKGTHLLMKKWKYNFVNLWQYYFHFWYQSYRIHINQLSKHSFHFLGYLSS 352

Query: 371 LLVNLIHLGMRLVSNTELMD-LTTKLNPAICTGFL 472
           LL N   +  +++ N+ L+D LTTK + A+   FL
Sbjct: 353 LLKNSSTVRNQMLDNSFLIDTLTTKFDTAVPVIFL 387

>MATK_MICJU (Q4H192) Maturase K (Intron maturase)|
          Length = 522

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 16/95 (16%)
 Frame = +2

Query: 236 AKCNGKFLAVINQSVLLLL-----IFNVEHHHIGSWFVT----------HGFHFYA*FI* 370
           A+C GK + V   + LL+        N+  ++   W+ +          H FHF      
Sbjct: 293 ARCQGKAILVSKGTHLLMKKWKYNFVNLWQYYFYFWYQSYRIHINQLSKHSFHFLGYLSS 352

Query: 371 LLVNLIHLGMRLVSNTELMD-LTTKLNPAICTGFL 472
           LL N   +  +++ N+ L+D LTTK + A+   FL
Sbjct: 353 LLKNSSTVRNKILDNSFLIDTLTTKFDTAVPVIFL 387

>HEMH_PSESM (Q888A2) Ferrochelatase (EC 4.99.1.1) (Protoheme ferro-lyase) (Heme|
           synthetase)
          Length = 340

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 7/114 (6%)
 Frame = -3

Query: 397 PQMDQIYQKLDELGIEMKTMG--YKPTTDVVMFDVEDEEKEHTLVYHSEKLAIAFCLLST 224
           P ++ +  +L E G +  T+   Y    D  +  V +E K    V  ++ L + F +L  
Sbjct: 102 PSIETVLTRLSEQGFKKVTLAPLYPQFADSTVTTVIEEAKR---VVRAKSLKMQFSVLQP 158

Query: 223 ---QPGEVIRVTKNLRVCTDCHTAIKLIS--RITHREIIVRDNNRFHCFEDGCC 77
              QP  V  + +++R   +      L+S   +  R +  RD    HC +D CC
Sbjct: 159 FYDQPEYVSALVESVRPHLEQPYDHLLLSFHGLPERHLHKRDPTGKHCLKDDCC 212

>NADE_RHILO (Q988H0) NH(3)-dependent NAD(+) synthetase (EC 6.3.1.5)|
          Length = 319

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 16/52 (30%), Positives = 22/52 (42%)
 Frame = -3

Query: 400 HPQMDQIYQKLDELGIEMKTMGYKPTTDVVMFDVEDEEKEHTLVYHSEKLAI 245
           H    Q+YQ  + LG++ +     PTTD        EE    L YH   L +
Sbjct: 215 HLYKTQVYQLAEYLGVDEEIRQRPPTTDTFSMAQSQEEFYFALPYHLMDLCL 266


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,486,986
Number of Sequences: 219361
Number of extensions: 2145385
Number of successful extensions: 5711
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5707
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6825954960
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)