ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags10a20 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 496 bits (250), Expect = e-137 Identities = 514/602 (85%) Strand = Plus / Plus Query: 54 ttctaccagtagtcattacaagagcaacaaccatcttcaaaacaatgaaatcggttgtta 113 |||||||| |||||||| || |||||| |||||||| ||||||||||||||| |||||| Sbjct: 444989 ttctaccaatagtcattgcaggagcaagaaccatctctaaaacaatgaaatcgattgtta 445048 Query: 114 tcccgaacaatgatctcccgatgagttatccttgatattagtttaatagcagtgtgacag 173 || || |||||||||||||||||||||||||| |||| |||||||| |||||||||||| Sbjct: 445049 tctcggacaatgatctcccgatgagttatcctcgatacgagtttaattgcagtgtgacag 445108 Query: 174 tcggtgcaaaccctaaggttcttggtgaccctaatgacctcccctggttgggtactgaga 233 || ||||||| || ||||||||||||||||||||| |||||||||| || ||||| Sbjct: 445109 tcactgcaaactctgaggttcttggtgaccctaatggtctcccctggtccagtgatgaga 445168 Query: 234 aggcaaaatgcaatggcaagtttctcgctgtgataaaccagagtgtgctccttctcctca 293 ||| ||||||||| || |||||||| || |||| || || |||||||||||||| ||| Sbjct: 445169 aggttaaatgcaattgctagtttctcactatgatgcactagtgtgtgctccttctcttca 445228 Query: 294 tcttcaacgtcgaacatcaccacatcggtagttggtttgtaacccatggttttcatttct 353 |||||||| || ||||||||||| || || ||||||| |||||||||||||||||||| Sbjct: 445229 tcttcaacatcaaacatcaccacttctgttgttggttcataacccatggttttcatttcc 445288 Query: 354 atgcctaattcatctagcttttggtaaatctgatccatctggggatgcgacttgtctcca 413 | |||||||| || ||||||| |||||||||||| | ||||||||||||||||| Sbjct: 445289 aatcctaattcgtcgagctttttgtaaatctgatctgaaagaggatgcgacttgtctccg 445348 Query: 414 acacggaactcatggaccttaccactaaactcaacccagctatatgcacgggctttctca 473 |||||||| |||||||||||||| ||||||||||||||| ||||| | | ||||| Sbjct: 445349 acacggaattcatggaccttaccttcaaactcaacccagctgcatgcaggaaccttctcg 445408 Query: 474 acccctttcaccttcatgtccgatctaagcttcgcagcatcctcccatctgttgctgtta 533 |||||||| | ||||||||| ||||||||||||| ||||||||||||||| |||||| Sbjct: 445409 accccttttgctttcatgtccaatctaagcttcgctgcatcctcccatctgcctctgtta 445468 Query: 534 gagtatatgtttgagagcatgacataatttccggaattccggggctctagcaggatgagc 593 ||||||||||| |||||||| ||||| || || ||||||| |||||| || || |||||| Sbjct: 445469 gagtatatgttggagagcattacatagttcccagaattccagggctccagtagaatgagc 445528 Query: 594 tgcttcaagacatgttctgcaagctcagcgtctcggtgaatcttgcagccaccaagaagt 653 |||||||| |||||||| |||||||| | || |||||||||||||||||||||||||||| Sbjct: 445529 tgcttcaaaacatgttcagcaagctccgtgtttcggtgaatcttgcagccaccaagaagt 445588 Query: 654 gc 655 || Sbjct: 445589 gc 445590
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 496 bits (250), Expect = e-137 Identities = 514/602 (85%) Strand = Plus / Plus Query: 54 ttctaccagtagtcattacaagagcaacaaccatcttcaaaacaatgaaatcggttgtta 113 |||||||| |||||||| || |||||| |||||||| ||||||||||||||| |||||| Sbjct: 444989 ttctaccaatagtcattgcaggagcaagaaccatctctaaaacaatgaaatcgattgtta 445048 Query: 114 tcccgaacaatgatctcccgatgagttatccttgatattagtttaatagcagtgtgacag 173 || || |||||||||||||||||||||||||| |||| |||||||| |||||||||||| Sbjct: 445049 tctcggacaatgatctcccgatgagttatcctcgatacgagtttaattgcagtgtgacag 445108 Query: 174 tcggtgcaaaccctaaggttcttggtgaccctaatgacctcccctggttgggtactgaga 233 || ||||||| || ||||||||||||||||||||| |||||||||| || ||||| Sbjct: 445109 tcactgcaaactctgaggttcttggtgaccctaatggtctcccctggtccagtgatgaga 445168 Query: 234 aggcaaaatgcaatggcaagtttctcgctgtgataaaccagagtgtgctccttctcctca 293 ||| ||||||||| || |||||||| || |||| || || |||||||||||||| ||| Sbjct: 445169 aggttaaatgcaattgctagtttctcactatgatgcactagtgtgtgctccttctcttca 445228 Query: 294 tcttcaacgtcgaacatcaccacatcggtagttggtttgtaacccatggttttcatttct 353 |||||||| || ||||||||||| || || ||||||| |||||||||||||||||||| Sbjct: 445229 tcttcaacatcaaacatcaccacttctgttgttggttcataacccatggttttcatttcc 445288 Query: 354 atgcctaattcatctagcttttggtaaatctgatccatctggggatgcgacttgtctcca 413 | |||||||| || ||||||| |||||||||||| | ||||||||||||||||| Sbjct: 445289 aatcctaattcgtcgagctttttgtaaatctgatctgaaagaggatgcgacttgtctccg 445348 Query: 414 acacggaactcatggaccttaccactaaactcaacccagctatatgcacgggctttctca 473 |||||||| |||||||||||||| ||||||||||||||| ||||| | | ||||| Sbjct: 445349 acacggaattcatggaccttaccttcaaactcaacccagctgcatgcaggaaccttctcg 445408 Query: 474 acccctttcaccttcatgtccgatctaagcttcgcagcatcctcccatctgttgctgtta 533 |||||||| | ||||||||| ||||||||||||| ||||||||||||||| |||||| Sbjct: 445409 accccttttgctttcatgtccaatctaagcttcgctgcatcctcccatctgcctctgtta 445468 Query: 534 gagtatatgtttgagagcatgacataatttccggaattccggggctctagcaggatgagc 593 ||||||||||| |||||||| ||||| || || ||||||| |||||| || || |||||| Sbjct: 445469 gagtatatgttggagagcattacatagttcccagaattccagggctccagtagaatgagc 445528 Query: 594 tgcttcaagacatgttctgcaagctcagcgtctcggtgaatcttgcagccaccaagaagt 653 |||||||| |||||||| |||||||| | || |||||||||||||||||||||||||||| Sbjct: 445529 tgcttcaaaacatgttcagcaagctccgtgtttcggtgaatcttgcagccaccaagaagt 445588 Query: 654 gc 655 || Sbjct: 445589 gc 445590
>emb|BX000497.1|CNS08CDN Oryza sativa chromosome 11, . BAC OSJNBa0010K05 of library OSJNBa from chromosome 11 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 164143 Score = 496 bits (250), Expect = e-137 Identities = 514/602 (85%) Strand = Plus / Plus Query: 54 ttctaccagtagtcattacaagagcaacaaccatcttcaaaacaatgaaatcggttgtta 113 |||||||| |||||||| || |||||| |||||||| ||||||||||||||| |||||| Sbjct: 152307 ttctaccaatagtcattgcaggagcaagaaccatctctaaaacaatgaaatcgattgtta 152366 Query: 114 tcccgaacaatgatctcccgatgagttatccttgatattagtttaatagcagtgtgacag 173 || || |||||||||||||||||||||||||| |||| |||||||| |||||||||||| Sbjct: 152367 tctcggacaatgatctcccgatgagttatcctcgatacgagtttaattgcagtgtgacag 152426 Query: 174 tcggtgcaaaccctaaggttcttggtgaccctaatgacctcccctggttgggtactgaga 233 || ||||||| || ||||||||||||||||||||| |||||||||| || ||||| Sbjct: 152427 tcactgcaaactctgaggttcttggtgaccctaatggtctcccctggtccagtgatgaga 152486 Query: 234 aggcaaaatgcaatggcaagtttctcgctgtgataaaccagagtgtgctccttctcctca 293 ||| ||||||||| || |||||||| || |||| || || |||||||||||||| ||| Sbjct: 152487 aggttaaatgcaattgctagtttctcactatgatgcactagtgtgtgctccttctcttca 152546 Query: 294 tcttcaacgtcgaacatcaccacatcggtagttggtttgtaacccatggttttcatttct 353 |||||||| || ||||||||||| || || ||||||| |||||||||||||||||||| Sbjct: 152547 tcttcaacatcaaacatcaccacttctgttgttggttcataacccatggttttcatttcc 152606 Query: 354 atgcctaattcatctagcttttggtaaatctgatccatctggggatgcgacttgtctcca 413 | |||||||| || ||||||| |||||||||||| | ||||||||||||||||| Sbjct: 152607 aatcctaattcgtcgagctttttgtaaatctgatctgaaagaggatgcgacttgtctccg 152666 Query: 414 acacggaactcatggaccttaccactaaactcaacccagctatatgcacgggctttctca 473 |||||||| |||||||||||||| ||||||||||||||| ||||| | | ||||| Sbjct: 152667 acacggaattcatggaccttaccttcaaactcaacccagctgcatgcaggaaccttctcg 152726 Query: 474 acccctttcaccttcatgtccgatctaagcttcgcagcatcctcccatctgttgctgtta 533 |||||||| | ||||||||| ||||||||||||| ||||||||||||||| |||||| Sbjct: 152727 accccttttgctttcatgtccaatctaagcttcgctgcatcctcccatctgcctctgtta 152786 Query: 534 gagtatatgtttgagagcatgacataatttccggaattccggggctctagcaggatgagc 593 ||||||||||| |||||||| ||||| || || ||||||| |||||| || || |||||| Sbjct: 152787 gagtatatgttggagagcattacatagttcccagaattccagggctccagtagaatgagc 152846 Query: 594 tgcttcaagacatgttctgcaagctcagcgtctcggtgaatcttgcagccaccaagaagt 653 |||||||| |||||||| |||||||| | || |||||||||||||||||||||||||||| Sbjct: 152847 tgcttcaaaacatgttcagcaagctccgtgtttcggtgaatcttgcagccaccaagaagt 152906 Query: 654 gc 655 || Sbjct: 152907 gc 152908
>emb|BX000493.1|CNS08CDJ Oryza sativa chromosome 11, . BAC OSJNBb0037D03 of library OSJNBb from chromosome 11 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 130544 Score = 496 bits (250), Expect = e-137 Identities = 514/602 (85%) Strand = Plus / Minus Query: 54 ttctaccagtagtcattacaagagcaacaaccatcttcaaaacaatgaaatcggttgtta 113 |||||||| |||||||| || |||||| |||||||| ||||||||||||||| |||||| Sbjct: 125324 ttctaccaatagtcattgcaggagcaagaaccatctctaaaacaatgaaatcgattgtta 125265 Query: 114 tcccgaacaatgatctcccgatgagttatccttgatattagtttaatagcagtgtgacag 173 || || |||||||||||||||||||||||||| |||| |||||||| |||||||||||| Sbjct: 125264 tctcggacaatgatctcccgatgagttatcctcgatacgagtttaattgcagtgtgacag 125205 Query: 174 tcggtgcaaaccctaaggttcttggtgaccctaatgacctcccctggttgggtactgaga 233 || ||||||| || ||||||||||||||||||||| |||||||||| || ||||| Sbjct: 125204 tcactgcaaactctgaggttcttggtgaccctaatggtctcccctggtccagtgatgaga 125145 Query: 234 aggcaaaatgcaatggcaagtttctcgctgtgataaaccagagtgtgctccttctcctca 293 ||| ||||||||| || |||||||| || |||| || || |||||||||||||| ||| Sbjct: 125144 aggttaaatgcaattgctagtttctcactatgatgcactagtgtgtgctccttctcttca 125085 Query: 294 tcttcaacgtcgaacatcaccacatcggtagttggtttgtaacccatggttttcatttct 353 |||||||| || ||||||||||| || || ||||||| |||||||||||||||||||| Sbjct: 125084 tcttcaacatcaaacatcaccacttctgttgttggttcataacccatggttttcatttcc 125025 Query: 354 atgcctaattcatctagcttttggtaaatctgatccatctggggatgcgacttgtctcca 413 | |||||||| || ||||||| |||||||||||| | ||||||||||||||||| Sbjct: 125024 aatcctaattcgtcgagctttttgtaaatctgatctgaaagaggatgcgacttgtctccg 124965 Query: 414 acacggaactcatggaccttaccactaaactcaacccagctatatgcacgggctttctca 473 |||||||| |||||||||||||| ||||||||||||||| ||||| | | ||||| Sbjct: 124964 acacggaattcatggaccttaccttcaaactcaacccagctgcatgcaggaaccttctcg 124905 Query: 474 acccctttcaccttcatgtccgatctaagcttcgcagcatcctcccatctgttgctgtta 533 |||||||| | ||||||||| ||||||||||||| ||||||||||||||| |||||| Sbjct: 124904 accccttttgctttcatgtccaatctaagcttcgctgcatcctcccatctgcctctgtta 124845 Query: 534 gagtatatgtttgagagcatgacataatttccggaattccggggctctagcaggatgagc 593 ||||||||||| |||||||| ||||| || || ||||||| |||||| || || |||||| Sbjct: 124844 gagtatatgttggagagcattacatagttcccagaattccagggctccagtagaatgagc 124785 Query: 594 tgcttcaagacatgttctgcaagctcagcgtctcggtgaatcttgcagccaccaagaagt 653 |||||||| |||||||| |||||||| | || |||||||||||||||||||||||||||| Sbjct: 124784 tgcttcaaaacatgttcagcaagctccgtgtttcggtgaatcttgcagccaccaagaagt 124725 Query: 654 gc 655 || Sbjct: 124724 gc 124723
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 482 bits (243), Expect = e-133 Identities = 528/623 (84%) Strand = Plus / Plus Query: 54 ttctaccagtagtcattacaagagcaacaaccatcttcaaaacaatgaaatcggttgtta 113 |||||||| |||||||| || |||||| |||||||| ||||||||||||||| |||||| Sbjct: 499289 ttctaccaatagtcattgcaggagcaagaaccatctctaaaacaatgaaatcgattgtta 499348 Query: 114 tcccgaacaatgatctcccgatgagttatccttgatattagtttaatagcagtgtgacag 173 || || |||||||||||||||||||||||||| ||||| |||||||| |||||||||||| Sbjct: 499349 tctcggacaatgatctcccgatgagttatcctcgatatgagtttaattgcagtgtgacag 499408 Query: 174 tcggtgcaaaccctaaggttcttggtgaccctaatgacctcccctggttgggtactgaga 233 || ||||||| || ||||||||||||||||||||| |||||||||| || |||| Sbjct: 499409 tcactgcaaactctgaggttcttggtgaccctaatggtctcccctggtccagtgacgaga 499468 Query: 234 aggcaaaatgcaatggcaagtttctcgctgtgataaaccagagtgtgctccttctcctca 293 ||| ||||||||| || |||||||| || |||| || || |||||||||||||| ||| Sbjct: 499469 aggttaaatgcaattgctagtttctcactatgatgcactagtgtgtgctccttctcttca 499528 Query: 294 tcttcaacgtcgaacatcaccacatcggtagttggtttgtaacccatggttttcatttct 353 |||||||| || ||||||||||| || || ||||||| |||||||||||||||||||| Sbjct: 499529 tcttcaacatcaaacatcaccacttctgttgttggttcataacccatggttttcatttcc 499588 Query: 354 atgcctaattcatctagcttttggtaaatctgatccatctggggatgcgacttgtctcca 413 | |||||||| || ||||||| |||||||||||| | ||||| ||||||||||| Sbjct: 499589 aatcctaattcgtcgagctttttgtaaatctgatctgaaagaggatgtgacttgtctccg 499648 Query: 414 acacggaactcatggaccttaccactaaactcaacccagctatatgcacgggctttctca 473 ||||||||||||||||||||||| ||||||||||||||| ||||| | | ||||| Sbjct: 499649 acacggaactcatggaccttaccttcaaactcaacccagctgcatgcaggaaccttctcg 499708 Query: 474 acccctttcaccttcatgtccgatctaagcttcgcagcatcctcccatctgttgctgtta 533 |||||||| ||||||||||| |||||||||| || || |||||||||||| |||||| Sbjct: 499709 acccctttttccttcatgtccaatctaagctttgctgcgtcctcccatctgcctctgtta 499768 Query: 534 gagtatatgtttgagagcatgacataatttccggaattccggggctctagcaggatgagc 593 ||||||||||| |||||||||||||| || || ||||||| |||||| || | |||||| Sbjct: 499769 gagtatatgttagagagcatgacatagttcccagaattccagggctccagtcgaatgagc 499828 Query: 594 tgcttcaagacatgttctgcaagctcagcgtctcggtgaatcttgcagccaccaagaagt 653 ||| |||| |||||||| |||||||| || | |||||||||||||||||||||||||||| Sbjct: 499829 tgcgtcaatacatgttcagcaagctctgcatttcggtgaatcttgcagccaccaagaagt 499888 Query: 654 gctccccacacgacagcgtttgc 676 || ||| | | |||||| ||||| Sbjct: 499889 gcacccaatatgacagcatttgc 499911 Score = 111 bits (56), Expect = 3e-21 Identities = 107/123 (86%), Gaps = 2/123 (1%) Strand = Plus / Plus Query: 54 ttctaccagtagtcattacaagagc--aacaaccatcttcaaaacaatgaaatcggttgt 111 |||||||| |||||||| || |||| || |||||||| ||||||||||||| |||||| Sbjct: 519738 ttctaccaatagtcattgcaggagcgcaagaaccatctctaaaacaatgaaattggttgt 519797 Query: 112 tatcccgaacaatgatctcccgatgagttatccttgatattagtttaatagcagtgtgac 171 |||| || ||||||||||| |||||||||||| | ||||| |||||||| |||||||||| Sbjct: 519798 tatctcggacaatgatctctcgatgagttatcgtcgatatgagtttaattgcagtgtgac 519857 Query: 172 agt 174 ||| Sbjct: 519858 agt 519860
>dbj|AK103426.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033128L01, full insert sequence Length = 2413 Score = 482 bits (243), Expect = e-133 Identities = 528/623 (84%) Strand = Plus / Minus Query: 54 ttctaccagtagtcattacaagagcaacaaccatcttcaaaacaatgaaatcggttgtta 113 |||||||| |||||||| || |||||| |||||||| ||||||||||||||| |||||| Sbjct: 1974 ttctaccaatagtcattgcaggagcaagaaccatctctaaaacaatgaaatcgattgtta 1915 Query: 114 tcccgaacaatgatctcccgatgagttatccttgatattagtttaatagcagtgtgacag 173 || || |||||||||||||||||||||||||| ||||| |||||||| |||||||||||| Sbjct: 1914 tctcggacaatgatctcccgatgagttatcctcgatatgagtttaattgcagtgtgacag 1855 Query: 174 tcggtgcaaaccctaaggttcttggtgaccctaatgacctcccctggttgggtactgaga 233 || ||||||| || ||||||||||||||||||||| |||||||||| || |||| Sbjct: 1854 tcactgcaaactctgaggttcttggtgaccctaatggtctcccctggtccagtgacgaga 1795 Query: 234 aggcaaaatgcaatggcaagtttctcgctgtgataaaccagagtgtgctccttctcctca 293 ||| ||||||||| || |||||||| || |||| || || |||||||||||||| ||| Sbjct: 1794 aggttaaatgcaattgctagtttctcactatgatgcactagtgtgtgctccttctcttca 1735 Query: 294 tcttcaacgtcgaacatcaccacatcggtagttggtttgtaacccatggttttcatttct 353 |||||||| || ||||||||||| || || ||||||| |||||||||||||||||||| Sbjct: 1734 tcttcaacatcaaacatcaccacttctgttgttggttcataacccatggttttcatttcc 1675 Query: 354 atgcctaattcatctagcttttggtaaatctgatccatctggggatgcgacttgtctcca 413 | |||||||| || ||||||| |||||||||||| | ||||| ||||||||||| Sbjct: 1674 aatcctaattcgtcgagctttttgtaaatctgatctgaaagaggatgtgacttgtctccg 1615 Query: 414 acacggaactcatggaccttaccactaaactcaacccagctatatgcacgggctttctca 473 ||||||||||||||||||||||| ||||||||||||||| ||||| | | ||||| Sbjct: 1614 acacggaactcatggaccttaccttcaaactcaacccagctgcatgcaggaaccttctcg 1555 Query: 474 acccctttcaccttcatgtccgatctaagcttcgcagcatcctcccatctgttgctgtta 533 |||||||| ||||||||||| |||||||||| || || |||||||||||| |||||| Sbjct: 1554 acccctttttccttcatgtccaatctaagctttgctgcgtcctcccatctgcctctgtta 1495 Query: 534 gagtatatgtttgagagcatgacataatttccggaattccggggctctagcaggatgagc 593 ||||||||||| |||||||||||||| || || ||||||| |||||| || | |||||| Sbjct: 1494 gagtatatgttagagagcatgacatagttcccagaattccagggctccagtcgaatgagc 1435 Query: 594 tgcttcaagacatgttctgcaagctcagcgtctcggtgaatcttgcagccaccaagaagt 653 ||| |||| |||||||| |||||||| || | |||||||||||||||||||||||||||| Sbjct: 1434 tgcgtcaatacatgttcagcaagctctgcatttcggtgaatcttgcagccaccaagaagt 1375 Query: 654 gctccccacacgacagcgtttgc 676 || ||| | | |||||| ||||| Sbjct: 1374 gcacccaatatgacagcatttgc 1352
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 482 bits (243), Expect = e-133 Identities = 528/623 (84%) Strand = Plus / Plus Query: 54 ttctaccagtagtcattacaagagcaacaaccatcttcaaaacaatgaaatcggttgtta 113 |||||||| |||||||| || |||||| |||||||| ||||||||||||||| |||||| Sbjct: 499289 ttctaccaatagtcattgcaggagcaagaaccatctctaaaacaatgaaatcgattgtta 499348 Query: 114 tcccgaacaatgatctcccgatgagttatccttgatattagtttaatagcagtgtgacag 173 || || |||||||||||||||||||||||||| ||||| |||||||| |||||||||||| Sbjct: 499349 tctcggacaatgatctcccgatgagttatcctcgatatgagtttaattgcagtgtgacag 499408 Query: 174 tcggtgcaaaccctaaggttcttggtgaccctaatgacctcccctggttgggtactgaga 233 || ||||||| || ||||||||||||||||||||| |||||||||| || |||| Sbjct: 499409 tcactgcaaactctgaggttcttggtgaccctaatggtctcccctggtccagtgacgaga 499468 Query: 234 aggcaaaatgcaatggcaagtttctcgctgtgataaaccagagtgtgctccttctcctca 293 ||| ||||||||| || |||||||| || |||| || || |||||||||||||| ||| Sbjct: 499469 aggttaaatgcaattgctagtttctcactatgatgcactagtgtgtgctccttctcttca 499528 Query: 294 tcttcaacgtcgaacatcaccacatcggtagttggtttgtaacccatggttttcatttct 353 |||||||| || ||||||||||| || || ||||||| |||||||||||||||||||| Sbjct: 499529 tcttcaacatcaaacatcaccacttctgttgttggttcataacccatggttttcatttcc 499588 Query: 354 atgcctaattcatctagcttttggtaaatctgatccatctggggatgcgacttgtctcca 413 | |||||||| || ||||||| |||||||||||| | ||||| ||||||||||| Sbjct: 499589 aatcctaattcgtcgagctttttgtaaatctgatctgaaagaggatgtgacttgtctccg 499648 Query: 414 acacggaactcatggaccttaccactaaactcaacccagctatatgcacgggctttctca 473 ||||||||||||||||||||||| ||||||||||||||| ||||| | | ||||| Sbjct: 499649 acacggaactcatggaccttaccttcaaactcaacccagctgcatgcaggaaccttctcg 499708 Query: 474 acccctttcaccttcatgtccgatctaagcttcgcagcatcctcccatctgttgctgtta 533 |||||||| ||||||||||| |||||||||| || || |||||||||||| |||||| Sbjct: 499709 acccctttttccttcatgtccaatctaagctttgctgcgtcctcccatctgcctctgtta 499768 Query: 534 gagtatatgtttgagagcatgacataatttccggaattccggggctctagcaggatgagc 593 ||||||||||| |||||||||||||| || || ||||||| |||||| || | |||||| Sbjct: 499769 gagtatatgttagagagcatgacatagttcccagaattccagggctccagtcgaatgagc 499828 Query: 594 tgcttcaagacatgttctgcaagctcagcgtctcggtgaatcttgcagccaccaagaagt 653 ||| |||| |||||||| |||||||| || | |||||||||||||||||||||||||||| Sbjct: 499829 tgcgtcaatacatgttcagcaagctctgcatttcggtgaatcttgcagccaccaagaagt 499888 Query: 654 gctccccacacgacagcgtttgc 676 || ||| | | |||||| ||||| Sbjct: 499889 gcacccaatatgacagcatttgc 499911 Score = 111 bits (56), Expect = 3e-21 Identities = 107/123 (86%), Gaps = 2/123 (1%) Strand = Plus / Plus Query: 54 ttctaccagtagtcattacaagagc--aacaaccatcttcaaaacaatgaaatcggttgt 111 |||||||| |||||||| || |||| || |||||||| ||||||||||||| |||||| Sbjct: 519738 ttctaccaatagtcattgcaggagcgcaagaaccatctctaaaacaatgaaattggttgt 519797 Query: 112 tatcccgaacaatgatctcccgatgagttatccttgatattagtttaatagcagtgtgac 171 |||| || ||||||||||| |||||||||||| | ||||| |||||||| |||||||||| Sbjct: 519798 tatctcggacaatgatctctcgatgagttatcgtcgatatgagtttaattgcagtgtgac 519857 Query: 172 agt 174 ||| Sbjct: 519858 agt 519860
>emb|BX000492.1|CNS08CDI Oryza sativa chromosome 12, . BAC OSJNBa0024J08 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 141089 Score = 482 bits (243), Expect = e-133 Identities = 528/623 (84%) Strand = Plus / Minus Query: 54 ttctaccagtagtcattacaagagcaacaaccatcttcaaaacaatgaaatcggttgtta 113 |||||||| |||||||| || |||||| |||||||| ||||||||||||||| |||||| Sbjct: 47483 ttctaccaatagtcattgcaggagcaagaaccatctctaaaacaatgaaatcgattgtta 47424 Query: 114 tcccgaacaatgatctcccgatgagttatccttgatattagtttaatagcagtgtgacag 173 || || |||||||||||||||||||||||||| ||||| |||||||| |||||||||||| Sbjct: 47423 tctcggacaatgatctcccgatgagttatcctcgatatgagtttaattgcagtgtgacag 47364 Query: 174 tcggtgcaaaccctaaggttcttggtgaccctaatgacctcccctggttgggtactgaga 233 || ||||||| || ||||||||||||||||||||| |||||||||| || |||| Sbjct: 47363 tcactgcaaactctgaggttcttggtgaccctaatggtctcccctggtccagtgacgaga 47304 Query: 234 aggcaaaatgcaatggcaagtttctcgctgtgataaaccagagtgtgctccttctcctca 293 ||| ||||||||| || |||||||| || |||| || || |||||||||||||| ||| Sbjct: 47303 aggttaaatgcaattgctagtttctcactatgatgcactagtgtgtgctccttctcttca 47244 Query: 294 tcttcaacgtcgaacatcaccacatcggtagttggtttgtaacccatggttttcatttct 353 |||||||| || ||||||||||| || || ||||||| |||||||||||||||||||| Sbjct: 47243 tcttcaacatcaaacatcaccacttctgttgttggttcataacccatggttttcatttcc 47184 Query: 354 atgcctaattcatctagcttttggtaaatctgatccatctggggatgcgacttgtctcca 413 | |||||||| || ||||||| |||||||||||| | ||||| ||||||||||| Sbjct: 47183 aatcctaattcgtcgagctttttgtaaatctgatctgaaagaggatgtgacttgtctccg 47124 Query: 414 acacggaactcatggaccttaccactaaactcaacccagctatatgcacgggctttctca 473 ||||||||||||||||||||||| ||||||||||||||| ||||| | | ||||| Sbjct: 47123 acacggaactcatggaccttaccttcaaactcaacccagctgcatgcaggaaccttctcg 47064 Query: 474 acccctttcaccttcatgtccgatctaagcttcgcagcatcctcccatctgttgctgtta 533 |||||||| ||||||||||| |||||||||| || || |||||||||||| |||||| Sbjct: 47063 acccctttttccttcatgtccaatctaagctttgctgcgtcctcccatctgcctctgtta 47004 Query: 534 gagtatatgtttgagagcatgacataatttccggaattccggggctctagcaggatgagc 593 ||||||||||| |||||||||||||| || || ||||||| |||||| || | |||||| Sbjct: 47003 gagtatatgttagagagcatgacatagttcccagaattccagggctccagtcgaatgagc 46944 Query: 594 tgcttcaagacatgttctgcaagctcagcgtctcggtgaatcttgcagccaccaagaagt 653 ||| |||| |||||||| |||||||| || | |||||||||||||||||||||||||||| Sbjct: 46943 tgcgtcaatacatgttcagcaagctctgcatttcggtgaatcttgcagccaccaagaagt 46884 Query: 654 gctccccacacgacagcgtttgc 676 || ||| | | |||||| ||||| Sbjct: 46883 gcacccaatatgacagcatttgc 46861 Score = 111 bits (56), Expect = 3e-21 Identities = 107/123 (86%), Gaps = 2/123 (1%) Strand = Plus / Minus Query: 54 ttctaccagtagtcattacaagagc--aacaaccatcttcaaaacaatgaaatcggttgt 111 |||||||| |||||||| || |||| || |||||||| ||||||||||||| |||||| Sbjct: 27034 ttctaccaatagtcattgcaggagcgcaagaaccatctctaaaacaatgaaattggttgt 26975 Query: 112 tatcccgaacaatgatctcccgatgagttatccttgatattagtttaatagcagtgtgac 171 |||| || ||||||||||| |||||||||||| | ||||| |||||||| |||||||||| Sbjct: 26974 tatctcggacaatgatctctcgatgagttatcgtcgatatgagtttaattgcagtgtgac 26915 Query: 172 agt 174 ||| Sbjct: 26914 agt 26912
>emb|AL161554.2|ATCHRIV54 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 54 Length = 198715 Score = 46.1 bits (23), Expect = 0.15 Identities = 53/63 (84%) Strand = Plus / Minus Query: 239 aaatgcaatggcaagtttctcgctgtgataaaccagagtgtgctccttctcctcatcttc 298 ||||||||| |||| ||||| ||||||||||||| || | ||||||||| || ||||| Sbjct: 59157 aaatgcaatagcaatcttctcactgtgataaaccacagcattctccttctcttcctcttc 59098 Query: 299 aac 301 ||| Sbjct: 59097 aac 59095
>emb|AL080282.1|ATT13K14 Arabidopsis thaliana DNA chromosome 4, BAC clone T13K14 (ESSA project) Length = 91570 Score = 46.1 bits (23), Expect = 0.15 Identities = 53/63 (84%) Strand = Plus / Minus Query: 239 aaatgcaatggcaagtttctcgctgtgataaaccagagtgtgctccttctcctcatcttc 298 ||||||||| |||| ||||| ||||||||||||| || | ||||||||| || ||||| Sbjct: 86679 aaatgcaatagcaatcttctcactgtgataaaccacagcattctccttctcttcctcttc 86620 Query: 299 aac 301 ||| Sbjct: 86619 aac 86617
>emb|AL021960.2|ATF7J7 Arabidopsis thaliana DNA chromosome 4, BAC clone F7J7 (ESSA project) Length = 91387 Score = 46.1 bits (23), Expect = 0.15 Identities = 53/63 (84%) Strand = Plus / Minus Query: 239 aaatgcaatggcaagtttctcgctgtgataaaccagagtgtgctccttctcctcatcttc 298 ||||||||| |||| ||||| ||||||||||||| || | ||||||||| || ||||| Sbjct: 955 aaatgcaatagcaatcttctcactgtgataaaccacagcattctccttctcttcctcttc 896 Query: 299 aac 301 ||| Sbjct: 895 aac 893
>emb|BX826462.1|CNS0A4C1 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB28ZF03 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1853 Score = 46.1 bits (23), Expect = 0.15 Identities = 53/63 (84%) Strand = Plus / Minus Query: 239 aaatgcaatggcaagtttctcgctgtgataaaccagagtgtgctccttctcctcatcttc 298 ||||||||| |||| ||||| ||||||||||||| || | ||||||||| || ||||| Sbjct: 1627 aaatgcaatagcaatcttctcactgtgataaaccacagcattctccttctcttcctcttc 1568 Query: 299 aac 301 ||| Sbjct: 1567 aac 1565
>emb|BX827021.1|CNS0A3CK Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB88ZD10 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1710 Score = 46.1 bits (23), Expect = 0.15 Identities = 53/63 (84%) Strand = Plus / Minus Query: 239 aaatgcaatggcaagtttctcgctgtgataaaccagagtgtgctccttctcctcatcttc 298 ||||||||| |||| ||||| ||||||||||||| || | ||||||||| || ||||| Sbjct: 1529 aaatgcaatagcaatcttctcactgtgataaaccacagcattctccttctcttcctcttc 1470 Query: 299 aac 301 ||| Sbjct: 1469 aac 1467
>emb|BX826365.1|CNS0A35W Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB19ZH02 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1667 Score = 46.1 bits (23), Expect = 0.15 Identities = 53/63 (84%) Strand = Plus / Minus Query: 239 aaatgcaatggcaagtttctcgctgtgataaaccagagtgtgctccttctcctcatcttc 298 ||||||||| |||| ||||| ||||||||||||| || | ||||||||| || ||||| Sbjct: 1504 aaatgcaatagcaatcttctcactgtgataaaccacagcattctccttctcttcctcttc 1445 Query: 299 aac 301 ||| Sbjct: 1444 aac 1442
>gb|AC147259.3| Mus musculus BAC clone RP24-178N16 from chromosome Y, complete sequence Length = 149994 Score = 44.1 bits (22), Expect = 0.60 Identities = 28/30 (93%) Strand = Plus / Minus Query: 39 acaccagtttcctgtttctaccagtagtca 68 |||||||||||||| ||| ||||||||||| Sbjct: 21006 acaccagtttcctgcttccaccagtagtca 20977
>gb|AC129191.4| Mus musculus BAC clone RP24-81F10 from chromosome Y, complete sequence Length = 241616 Score = 44.1 bits (22), Expect = 0.60 Identities = 28/30 (93%) Strand = Plus / Plus Query: 39 acaccagtttcctgtttctaccagtagtca 68 |||||||||||||| ||| ||||||||||| Sbjct: 129496 acaccagtttcctgcttccaccagtagtca 129525
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 44.1 bits (22), Expect = 0.60 Identities = 22/22 (100%) Strand = Plus / Minus Query: 301 cgtcgaacatcaccacatcggt 322 |||||||||||||||||||||| Sbjct: 1918922 cgtcgaacatcaccacatcggt 1918901
>ref|NM_064057.4| Caenorhabditis elegans B0334.5 (B0334.5) mRNA, complete cds Length = 1713 Score = 44.1 bits (22), Expect = 0.60 Identities = 22/22 (100%) Strand = Plus / Plus Query: 286 tctcctcatcttcaacgtcgaa 307 |||||||||||||||||||||| Sbjct: 1491 tctcctcatcttcaacgtcgaa 1512
>gb|AC175389.2| Mus musculus BAC clone RP24-152N3 from chromosome y, complete sequence Length = 123765 Score = 44.1 bits (22), Expect = 0.60 Identities = 28/30 (93%) Strand = Plus / Minus Query: 39 acaccagtttcctgtttctaccagtagtca 68 |||||||||||||| ||| ||||||||||| Sbjct: 91627 acaccagtttcctgcttccaccagtagtca 91598
>emb|Z66519.2|CEB0334 Caenorhabditis elegans Cosmid B0334, complete sequence Length = 41812 Score = 44.1 bits (22), Expect = 0.60 Identities = 22/22 (100%) Strand = Plus / Plus Query: 286 tctcctcatcttcaacgtcgaa 307 |||||||||||||||||||||| Sbjct: 20286 tctcctcatcttcaacgtcgaa 20307
>gb|AC150659.3| Mus musculus BAC clone RP24-147D24 from Y, complete sequence Length = 145892 Score = 44.1 bits (22), Expect = 0.60 Identities = 28/30 (93%) Strand = Plus / Minus Query: 39 acaccagtttcctgtttctaccagtagtca 68 |||||||||||||| ||| ||||||||||| Sbjct: 58723 acaccagtttcctgcttccaccagtagtca 58694
>gb|AC139027.12| Mus musculus chromosome 18, clone RP23-396C22, complete sequence Length = 195153 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 60 cagtagtcattacaagagcaa 80 ||||||||||||||||||||| Sbjct: 103739 cagtagtcattacaagagcaa 103719
>ref|NM_186040.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1679 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 239 aaatgcaatggcaagtttctcgctgtgat 267 ||||||||| ||||| ||||||||||||| Sbjct: 1454 aaatgcaattgcaagcttctcgctgtgat 1426
>gb|AC145267.5| Mus musculus BAC clone RP24-161F7 from chromosome Y, complete sequence Length = 159830 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 39 acaccagtttcctgtttctaccagtagtc 67 |||||||||||||| ||| |||||||||| Sbjct: 97684 acaccagtttcctgcttccaccagtagtc 97712
>gb|AC145346.3| Mus musculus BAC clone RP24-76G8 from chromosome Y, complete sequence Length = 207267 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 39 acaccagtttcctgtttctaccagtagtc 67 |||||||||||||| ||| |||||||||| Sbjct: 51286 acaccagtttcctgcttccaccagtagtc 51258
>gb|AC140401.4| Mus musculus BAC clone RP24-89O8 from chromosome Y, complete sequence Length = 244637 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 39 acaccagtttcctgtttctaccagtagtc 67 |||||||||||||| ||| |||||||||| Sbjct: 181161 acaccagtttcctgcttccaccagtagtc 181189
>gb|AC145742.3| Mus musculus BAC clone RP24-225F21 from chromosome Y, complete sequence Length = 183572 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 39 acaccagtttcctgtttctaccagtagtc 67 |||||||||||||| ||| |||||||||| Sbjct: 32616 acaccagtttcctgcttccaccagtagtc 32588
>gb|AC140925.4| Mus musculus BAC clone RP24-140B17 from chromosome Y, complete sequence Length = 172606 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 39 acaccagtttcctgtttctaccagtagtc 67 |||||||||||||| ||| |||||||||| Sbjct: 133831 acaccagtttcctgcttccaccagtagtc 133803
>gb|AC142265.4| Mus musculus BAC clone RP24-360F24 from chromosome Y, complete sequence Length = 164772 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 39 acaccagtttcctgtttctaccagtagtc 67 |||||||||||||| ||| |||||||||| Sbjct: 93946 acaccagtttcctgcttccaccagtagtc 93918
>gb|AC144579.2| Mus musculus BAC clone RP24-375M15 from chromosome Y, complete sequence Length = 162972 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 39 acaccagtttcctgtttctaccagtagtc 67 |||||||||||||| ||| |||||||||| Sbjct: 53451 acaccagtttcctgcttccaccagtagtc 53423
>gb|AC184101.1| Mus musculus BAC clone RP24-534I7 from chromosome y, complete sequence Length = 147390 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 39 acaccagtttcctgtttctaccagtagtc 67 |||||||||||||| ||| |||||||||| Sbjct: 94374 acaccagtttcctgcttccaccagtagtc 94402
>gb|AC175670.3| Mus musculus BAC clone RP24-304I16 from chromosome y, complete sequence Length = 168071 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 39 acaccagtttcctgtttctaccagtagtc 67 |||||||||||||| ||| |||||||||| Sbjct: 87825 acaccagtttcctgcttccaccagtagtc 87797
>gb|AC147126.2| Mus musculus BAC clone RP24-561J22 from chromosome Y, complete sequence Length = 141049 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 39 acaccagtttcctgtttctaccagtagtc 67 |||||||||||||| ||| |||||||||| Sbjct: 85120 acaccagtttcctgcttccaccagtagtc 85092
>gb|AC140255.4| Mus musculus BAC clone RP24-291E19 from chromosome Y, complete sequence Length = 187268 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 39 acaccagtttcctgtttctaccagtagtc 67 |||||||||||||| ||| |||||||||| Sbjct: 38548 acaccagtttcctgcttccaccagtagtc 38576
>gb|AC144582.3| Mus musculus BAC clone RP24-323J22 from chromosome Y, complete sequence Length = 214364 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 39 acaccagtttcctgtttctaccagtagtc 67 |||||||||||||| ||| |||||||||| Sbjct: 52023 acaccagtttcctgcttccaccagtagtc 52051
>gb|AC142451.4| Mus musculus BAC clone RP24-443M4 from chromosome Y, complete sequence Length = 138426 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 39 acaccagtttcctgtttctaccagtagtc 67 |||||||||||||| ||| |||||||||| Sbjct: 29045 acaccagtttcctgcttccaccagtagtc 29073
>gb|AC142412.3| Mus musculus BAC clone RP24-75E18 from chromosome Y, complete sequence Length = 175697 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 39 acaccagtttcctgtttctaccagtagtc 67 |||||||||||||| ||| |||||||||| Sbjct: 124403 acaccagtttcctgcttccaccagtagtc 124431
>gb|AC130834.4| Mus musculus BAC clone RP24-119M1 from chromosome Y, complete sequence Length = 189883 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 39 acaccagtttcctgtttctaccagtagtc 67 |||||||||||||| ||| |||||||||| Sbjct: 170780 acaccagtttcctgcttccaccagtagtc 170752
>gb|AC132341.4| Mus musculus BAC clone RP24-168C11 from chromosome Y, complete sequence Length = 142720 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 39 acaccagtttcctgtttctaccagtagtc 67 |||||||||||||| ||| |||||||||| Sbjct: 132493 acaccagtttcctgcttccaccagtagtc 132465
>gb|AC140439.3| Mus musculus BAC clone RP24-172C23 from chromosome Y, complete sequence Length = 152300 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 39 acaccagtttcctgtttctaccagtagtc 67 |||||||||||||| ||| |||||||||| Sbjct: 122037 acaccagtttcctgcttccaccagtagtc 122065
>gb|AC140427.3| Mus musculus BAC clone RP24-173G7 from chromosome Y, complete sequence Length = 182766 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 39 acaccagtttcctgtttctaccagtagtc 67 |||||||||||||| ||| |||||||||| Sbjct: 65945 acaccagtttcctgcttccaccagtagtc 65973
>gb|AC144855.3| Mus musculus BAC clone RP24-179H2 from chromosome Y, complete sequence Length = 152731 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 39 acaccagtttcctgtttctaccagtagtc 67 |||||||||||||| ||| |||||||||| Sbjct: 106259 acaccagtttcctgcttccaccagtagtc 106231
>gb|AC147159.2| Mus musculus BAC clone RP24-259B7 from chromosome Y, complete sequence Length = 150659 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 39 acaccagtttcctgtttctaccagtagtc 67 |||||||||||||| ||| |||||||||| Sbjct: 49450 acaccagtttcctgcttccaccagtagtc 49422
>gb|AC144552.3| Mus musculus BAC clone RP24-271M6 from chromosome Y, complete sequence Length = 166988 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 39 acaccagtttcctgtttctaccagtagtc 67 |||||||||||||| ||| |||||||||| Sbjct: 89536 acaccagtttcctgcttccaccagtagtc 89564
>gb|AC145564.4| Mus musculus BAC clone RP24-482K19 from chromosome Y, complete sequence Length = 188188 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 39 acaccagtttcctgtttctaccagtagtc 67 |||||||||||||| ||| |||||||||| Sbjct: 61890 acaccagtttcctgcttccaccagtagtc 61918
>gb|AC142473.2| Mus musculus BAC clone RP24-448M19 from chromosome Y, complete sequence Length = 143928 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 39 acaccagtttcctgtttctaccagtagtc 67 |||||||||||||| ||| |||||||||| Sbjct: 9839 acaccagtttcctgcttccaccagtagtc 9811
>gb|AC140474.3| Mus musculus BAC clone RP24-406O7 from chromosome Y, complete sequence Length = 123100 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 39 acaccagtttcctgtttctaccagtagtc 67 |||||||||||||| ||| |||||||||| Sbjct: 103116 acaccagtttcctgcttccaccagtagtc 103088
>gb|AC144409.3| Mus musculus BAC clone RP24-302I24 from chromosome Y, complete sequence Length = 148555 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 39 acaccagtttcctgtttctaccagtagtc 67 |||||||||||||| ||| |||||||||| Sbjct: 73991 acaccagtttcctgcttccaccagtagtc 73963
>emb|Z92542.2|HS245G19 Human DNA sequence from clone RP1-245G19 on chromosome Xp22.11-22.2 Contains the 3' end of the CDKL5 gene for cyclin-dependent kinase-like 5, the 3' end of the RS1 gene for retinoschisis (X-linked, juvenile) 1, and a gap junction protein, alpha 2, 38kDa (connexin 38) (GJA2) pseudogene, complete sequence Length = 145538 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 10 aactctaacctgctcaaaatt 30 ||||||||||||||||||||| Sbjct: 34468 aactctaacctgctcaaaatt 34448
>gb|AC175493.3| Mus musculus BAC clone RP24-70B12 from chromosome y, complete sequence Length = 206261 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 39 acaccagtttcctgtttctaccagtagtc 67 |||||||||||||| ||| |||||||||| Sbjct: 31286 acaccagtttcctgcttccaccagtagtc 31258
>gb|AC175667.3| Mus musculus BAC clone RP24-372I14 from chromosome y, complete sequence Length = 167889 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 39 acaccagtttcctgtttctaccagtagtc 67 |||||||||||||| ||| |||||||||| Sbjct: 41717 acaccagtttcctgcttccaccagtagtc 41689
>emb|AL121871.8|HSB258O15 Human DNA sequence from clone RP13-258O15 on chromosome X Contains a ribosomal protein L26 pseudogene, complete sequence Length = 183876 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 239 aaatgcaatggcaagtttctc 259 ||||||||||||||||||||| Sbjct: 9196 aaatgcaatggcaagtttctc 9216
>gb|AC142409.4| Mus musculus BAC clone RP24-185L20 from chromosome y, complete sequence Length = 150886 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 39 acaccagtttcctgtttctaccagtagtc 67 |||||||||||||| ||| |||||||||| Sbjct: 89958 acaccagtttcctgcttccaccagtagtc 89986
>gb|AC174232.4| Mus musculus BAC clone RP24-66G1 from chromosome y, complete sequence Length = 196032 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 39 acaccagtttcctgtttctaccagtagtc 67 |||||||||||||| ||| |||||||||| Sbjct: 3922 acaccagtttcctgcttccaccagtagtc 3950
>gb|AC182448.2| Mus musculus BAC clone RP24-490J20 from chromosome y, complete sequence Length = 222797 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 39 acaccagtttcctgtttctaccagtagtc 67 |||||||||||||| ||| |||||||||| Sbjct: 84842 acaccagtttcctgcttccaccagtagtc 84870
>gb|AC182730.2| Mus musculus BAC clone RP24-254G5 from chromosome y, complete sequence Length = 162064 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 39 acaccagtttcctgtttctaccagtagtc 67 |||||||||||||| ||| |||||||||| Sbjct: 147919 acaccagtttcctgcttccaccagtagtc 147891
>gb|AC182761.2| Mus musculus BAC clone RP24-91P5 from chromosome y, complete sequence Length = 212528 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 39 acaccagtttcctgtttctaccagtagtc 67 |||||||||||||| ||| |||||||||| Sbjct: 157126 acaccagtttcctgcttccaccagtagtc 157154
>gb|AC175744.2| Mus musculus BAC clone RP24-163J18 from chromosome y, complete sequence Length = 147935 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 39 acaccagtttcctgtttctaccagtagtc 67 |||||||||||||| ||| |||||||||| Sbjct: 102432 acaccagtttcctgcttccaccagtagtc 102460
>gb|AC175818.2| Mus musculus BAC clone RP24-566J3 from chromosome y, complete sequence Length = 125354 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 39 acaccagtttcctgtttctaccagtagtc 67 |||||||||||||| ||| |||||||||| Sbjct: 101372 acaccagtttcctgcttccaccagtagtc 101400
>gb|AC175461.3| Mus musculus BAC clone RP24-64J17 from chromosome y, complete sequence Length = 219754 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 39 acaccagtttcctgtttctaccagtagtc 67 |||||||||||||| ||| |||||||||| Sbjct: 104161 acaccagtttcctgcttccaccagtagtc 104189
>gb|AC175710.2| Mus musculus BAC clone RP24-44O16 from chromosome y, complete sequence Length = 185928 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 39 acaccagtttcctgtttctaccagtagtc 67 |||||||||||||| ||| |||||||||| Sbjct: 34848 acaccagtttcctgcttccaccagtagtc 34820
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 239 aaatgcaatggcaagtttctcgctgtgat 267 ||||||||| ||||| ||||||||||||| Sbjct: 27896802 aaatgcaattgcaagcttctcgctgtgat 27896774
>gb|AC145572.4| Mus musculus BAC clone RP24-95P13 from chromosome y, complete sequence Length = 181745 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 39 acaccagtttcctgtttctaccagtagtc 67 |||||||||||||| ||| |||||||||| Sbjct: 131320 acaccagtttcctgcttccaccagtagtc 131348
>gb|AC010081.4|AC010081 Homo sapiens BAC clone RP11-65E7 from Y, complete sequence Length = 176781 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 239 aaatgcaatggcaagtttctc 259 ||||||||||||||||||||| Sbjct: 157188 aaatgcaatggcaagtttctc 157208
>gb|AC175033.2| Mus musculus BAC clone RP24-283I7 from chromosome y, complete sequence Length = 153678 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 39 acaccagtttcctgtttctaccagtagtc 67 |||||||||||||| ||| |||||||||| Sbjct: 15210 acaccagtttcctgcttccaccagtagtc 15238
>dbj|AP005452.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0453E03 Length = 159980 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 239 aaatgcaatggcaagtttctcgctgtgat 267 ||||||||| ||||| ||||||||||||| Sbjct: 60160 aaatgcaattgcaagcttctcgctgtgat 60132
>dbj|AK106855.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-118-B07, full insert sequence Length = 1679 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 239 aaatgcaatggcaagtttctcgctgtgat 267 ||||||||| ||||| ||||||||||||| Sbjct: 1454 aaatgcaattgcaagcttctcgctgtgat 1426
>dbj|AP003049.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-10A7, complete sequence Length = 117001 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 236 gcaaaatgcaatggcaagttt 256 ||||||||||||||||||||| Sbjct: 93554 gcaaaatgcaatggcaagttt 93534
>gb|AC142490.3| Mus musculus BAC clone RP24-362J19 from Y, complete sequence Length = 184480 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 39 acaccagtttcctgtttctaccagtagtc 67 |||||||||||||| ||| |||||||||| Sbjct: 110362 acaccagtttcctgcttccaccagtagtc 110390
>gb|AC149063.4| Mus musculus BAC clone RP24-403G21 from Y, complete sequence Length = 144680 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 39 acaccagtttcctgtttctaccagtagtc 67 |||||||||||||| ||| |||||||||| Sbjct: 39126 acaccagtttcctgcttccaccagtagtc 39098
>gb|AC140421.4| Mus musculus BAC clone RP24-441H14 from Y, complete sequence Length = 204088 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 39 acaccagtttcctgtttctaccagtagtc 67 |||||||||||||| ||| |||||||||| Sbjct: 103183 acaccagtttcctgcttccaccagtagtc 103155
>emb|CT009582.3| Pan troglodytes chromosome X clone PTB-130G16 map Xq28, complete sequence Length = 195752 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 10 aactctaacctgctcaaaatt 30 ||||||||||||||||||||| Sbjct: 127206 aactctaacctgctcaaaatt 127186
>ref|NM_105811.1| Arabidopsis thaliana unknown protein AT1G71420 mRNA, complete cds Length = 2238 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 57 taccagtagtcattacaagagcaa 80 ||||||||||||||||| |||||| Sbjct: 2237 taccagtagtcattacaggagcaa 2214
>ref|NM_104391.1| Arabidopsis thaliana PLDEPSILON (PHOSPHOLIPASE D ALPHA 4); phospholipase D AT1G55180 (PLDEPSILON) mRNA, complete cds Length = 2289 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 396 ggatgcgacttgtctccaac 415 |||||||||||||||||||| Sbjct: 1706 ggatgcgacttgtctccaac 1687
>gb|AC110499.19| Mus musculus chromosome 1, clone RP23-202J6, complete sequence Length = 212282 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 72 caagagcaacaaccatcttc 91 |||||||||||||||||||| Sbjct: 133763 caagagcaacaaccatcttc 133782
>gb|AC145586.4| Mus musculus BAC clone RP24-167J1 from chromosome Y, complete sequence Length = 158469 Score = 40.1 bits (20), Expect = 9.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 39 acaccagtttcctgtttctaccagtagt 66 |||||||||||||| ||| ||||||||| Sbjct: 104246 acaccagtttcctgcttccaccagtagt 104273
>gb|AC171267.17| Medicago truncatula clone mth2-17i7, complete sequence Length = 108819 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 645 ccaagaagtgctccccacac 664 |||||||||||||||||||| Sbjct: 103917 ccaagaagtgctccccacac 103936
>gb|AC140388.3| Mus musculus BAC clone RP24-194N20 from chromosome Y, complete sequence Length = 168850 Score = 40.1 bits (20), Expect = 9.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 39 acaccagtttcctgtttctaccagtagt 66 |||||||||||||| ||| ||||||||| Sbjct: 161034 acaccagtttcctgcttccaccagtagt 161007
>gb|AC129594.3| Mus musculus BAC clone RP24-319J19 from chromosome Y, complete sequence Length = 147674 Score = 40.1 bits (20), Expect = 9.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 39 acaccagtttcctgtttctaccagtagt 66 |||||||||||||| ||| ||||||||| Sbjct: 109177 acaccagtttcctgcttccaccagtagt 109204
>gb|AC129209.4| Mus musculus BAC clone RP24-318B5 from chromosome Y, complete sequence Length = 177935 Score = 40.1 bits (20), Expect = 9.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 39 acaccagtttcctgtttctaccagtagt 66 |||||||||||||| ||| ||||||||| Sbjct: 9823 acaccagtttcctgcttccaccagtagt 9796
>gb|AC140371.3| Mus musculus BAC clone RP24-220G21 from chromosome Y, complete sequence Length = 190597 Score = 40.1 bits (20), Expect = 9.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 39 acaccagtttcctgtttctaccagtagt 66 |||||||||||||| ||| ||||||||| Sbjct: 79102 acaccagtttcctgcttccaccagtagt 79075
>gb|AC157771.8| Mus musculus chromosome 1, clone RP24-287N8, complete sequence Length = 189621 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 72 caagagcaacaaccatcttc 91 |||||||||||||||||||| Sbjct: 173441 caagagcaacaaccatcttc 173460
>gb|AC140423.2| Mus musculus BAC clone RP24-446B23 from chromosome Y, complete sequence Length = 203358 Score = 40.1 bits (20), Expect = 9.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 39 acaccagtttcctgtttctaccagtagt 66 |||||||||||||| ||| ||||||||| Sbjct: 130613 acaccagtttcctgcttccaccagtagt 130640
>gb|AC145344.2| Mus musculus BAC clone RP24-134P13 from chromosome Y, complete sequence Length = 183987 Score = 40.1 bits (20), Expect = 9.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 39 acaccagtttcctgtttctaccagtagt 66 |||||||||||||| ||| ||||||||| Sbjct: 163992 acaccagtttcctgcttccaccagtagt 163965
>gb|AC145266.3| Mus musculus BAC clone RP24-174A3 from chromosome Y, complete sequence Length = 143481 Score = 40.1 bits (20), Expect = 9.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 39 acaccagtttcctgtttctaccagtagt 66 |||||||||||||| ||| ||||||||| Sbjct: 50707 acaccagtttcctgcttccaccagtagt 50734
>gb|AC140394.3| Mus musculus BAC clone RP24-181E19 from chromosome Y, complete sequence Length = 163379 Score = 40.1 bits (20), Expect = 9.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 39 acaccagtttcctgtttctaccagtagt 66 |||||||||||||| ||| ||||||||| Sbjct: 149899 acaccagtttcctgcttccaccagtagt 149926
>gb|AC144581.3| Mus musculus BAC clone RP24-341C2 from chromosome Y, complete sequence Length = 162743 Score = 40.1 bits (20), Expect = 9.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 39 acaccagtttcctgtttctaccagtagt 66 |||||||||||||| ||| ||||||||| Sbjct: 43587 acaccagtttcctgcttccaccagtagt 43614
>emb|CT027659.2| Macaca mulatta chromosome 9 BAC CH250-288D8, complete sequence Length = 175570 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 15 taacctgctcaaaattgtaa 34 |||||||||||||||||||| Sbjct: 35804 taacctgctcaaaattgtaa 35785
>emb|AL357057.19| Human DNA sequence from clone RP11-802N13 on chromosome 6 Contains part of the CLIC5 gene for chloride intracellular channel 5, complete sequence Length = 58133 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 229 tgagaaggcaaaatgcaatggcaa 252 |||||| ||||||||||||||||| Sbjct: 21160 tgagaaagcaaaatgcaatggcaa 21183
>emb|AL031622.1|HS740A11 Human DNA sequence from clone RP4-740A11 on chromosome Xq22.2-23 Contains part of the COL4A5 gene for type IV alpha 5 collagen (Alport syndrome), complete sequence Length = 104674 Score = 40.1 bits (20), Expect = 9.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 220 gttgggtactgagaaggcaaaatgcaat 247 ||||| |||||||||| ||||||||||| Sbjct: 34461 gttggatactgagaagtcaaaatgcaat 34488
>emb|CR380956.1| Candida glabrata strain CBS138 chromosome J complete sequence Length = 1192501 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 476 ccctttcaccttcatgtccg 495 |||||||||||||||||||| Sbjct: 346347 ccctttcaccttcatgtccg 346366
>gb|AC179922.3| Mus musculus BAC clone RP24-571K5 from chromosome y, complete sequence Length = 151241 Score = 40.1 bits (20), Expect = 9.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 39 acaccagtttcctgtttctaccagtagt 66 |||||||||||||| ||| ||||||||| Sbjct: 27856 acaccagtttcctgcttccaccagtagt 27829
>gb|AC073683.3| Mus musculus chromosome 17 clone RP23-124G7, complete sequence Length = 213137 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 375 tggtaaatctgatccatctg 394 |||||||||||||||||||| Sbjct: 209790 tggtaaatctgatccatctg 209809
>gb|AC091990.2| Homo sapiens chromosome 5 clone RP11-82D20, complete sequence Length = 177470 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 333 taacccatggttttcatttc 352 |||||||||||||||||||| Sbjct: 59454 taacccatggttttcatttc 59473
>gb|AC012629.9| Homo sapiens chromosome 5 clone CTD-2154B17, complete sequence Length = 171603 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 333 taacccatggttttcatttc 352 |||||||||||||||||||| Sbjct: 24835 taacccatggttttcatttc 24854
>emb|BX511021.9| Zebrafish DNA sequence from clone DKEY-16P21 in linkage group 3, complete sequence Length = 235632 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 16 aacctgctcaaaattgtaac 35 |||||||||||||||||||| Sbjct: 179352 aacctgctcaaaattgtaac 179371
>gb|AC016162.5|AC016162 Arabidopsis thaliana chromosome 1 BAC F3I17 genomic sequence, complete sequence Length = 107579 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 57 taccagtagtcattacaagagcaa 80 ||||||||||||||||| |||||| Sbjct: 25033 taccagtagtcattacaggagcaa 25010
>gb|AC016163.6|AC016163 Arabidopsis thaliana chromosome 1 BAC F26A9 genomic sequence, complete sequence Length = 89653 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 57 taccagtagtcattacaagagcaa 80 ||||||||||||||||| |||||| Sbjct: 58250 taccagtagtcattacaggagcaa 58227
>gb|AC027034.10|AC027034 Arabidopsis thaliana chromosome 1 BAC F7A10 genomic sequence, complete sequence Length = 101954 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 396 ggatgcgacttgtctccaac 415 |||||||||||||||||||| Sbjct: 92668 ggatgcgacttgtctccaac 92649
>gb|AC140452.4| Mus musculus BAC clone RP24-120F24 from chromosome unknown, complete sequence Length = 199125 Score = 40.1 bits (20), Expect = 9.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 39 acaccagtttcctgtttctaccagtagt 66 |||||||||||||| ||| ||||||||| Sbjct: 87585 acaccagtttcctgcttccaccagtagt 87612
>emb|CT010491.8| Mouse DNA sequence from clone RP23-308D12 on chromosome 17, complete sequence Length = 208070 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 375 tggtaaatctgatccatctg 394 |||||||||||||||||||| Sbjct: 152796 tggtaaatctgatccatctg 152777
>gb|AC140924.4| Mus musculus BAC clone RP24-249B5 from Y, complete sequence Length = 200241 Score = 40.1 bits (20), Expect = 9.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 39 acaccagtttcctgtttctaccagtagt 66 |||||||||||||| ||| ||||||||| Sbjct: 154769 acaccagtttcctgcttccaccagtagt 154796
>gb|AC145575.3| Mus musculus BAC clone RP24-103M14 from Y, complete sequence Length = 152955 Score = 40.1 bits (20), Expect = 9.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 39 acaccagtttcctgtttctaccagtagt 66 |||||||||||||| ||| ||||||||| Sbjct: 88645 acaccagtttcctgcttccaccagtagt 88672
>gb|AC149597.4| Mus musculus BAC clone RP24-90B12 from Y, complete sequence Length = 198224 Score = 40.1 bits (20), Expect = 9.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 39 acaccagtttcctgtttctaccagtagt 66 |||||||||||||| ||| ||||||||| Sbjct: 114449 acaccagtttcctgcttccaccagtagt 114476
>gb|AC133955.4| Mus musculus BAC clone RP23-249M4 from 6, complete sequence Length = 185272 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 334 aacccatggttttcatttct 353 |||||||||||||||||||| Sbjct: 110325 aacccatggttttcatttct 110344
>dbj|AP004911.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT13O11, TM0069, complete sequence Length = 103659 Score = 40.1 bits (20), Expect = 9.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 239 aaatgcaatggcaagtttctcgctgtga 266 |||||| ||||||||| ||||||||||| Sbjct: 18155 aaatgctatggcaagtctctcgctgtga 18182 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,810,694 Number of Sequences: 3902068 Number of extensions: 5810694 Number of successful extensions: 109261 Number of sequences better than 10.0: 106 Number of HSP's better than 10.0 without gapping: 103 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 108895 Number of HSP's gapped (non-prelim): 365 length of query: 687 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 664 effective length of database: 17,143,297,704 effective search space: 11383149675456 effective search space used: 11383149675456 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
