ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags10a19
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1NMDE3_RAT (Q00961) Glutamate [NMDA] receptor subunit epsilon 3 p... 30 5.2
2NMDE3_MOUSE (Q01098) Glutamate [NMDA] receptor subunit epsilon 3... 30 5.2
3FZD10_HUMAN (Q9ULW2) Frizzled 10 precursor (Frizzled-10) (Fz-10)... 30 5.2
4ENA_DROME (Q8T4F7) Protein enabled 30 6.9
5PPNK_BIFLO (Q8G5G8) Probable inorganic polyphosphate/ATP-NAD kin... 30 9.0
6SYF2_DEBHA (Q6BVE0) Pre-mRNA-splicing factor SYF2 30 9.0

>NMDE3_RAT (Q00961) Glutamate [NMDA] receptor subunit epsilon 3 precursor|
           (N-methyl D-aspartate receptor subtype 2C) (NR2C)
           (NMDAR2C)
          Length = 1237

 Score = 30.4 bits (67), Expect = 5.2
 Identities = 18/52 (34%), Positives = 26/52 (50%)
 Frame = +3

Query: 171 INIISLGLIPLGSPRDLRSLLTLQYRPPILHHYCRRERRSRMLAHGRQATMV 326
           +++++L L P G PR     L  Q   P+L  YC RE    + A   QA +V
Sbjct: 196 LDVLTLELGP-GGPRARTQRLLRQVDAPVLVAYCSREEAEVLFAEAAQAGLV 246



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>NMDE3_MOUSE (Q01098) Glutamate [NMDA] receptor subunit epsilon 3 precursor|
           (N-methyl D-aspartate receptor subtype 2C) (NR2C)
           (NMDAR2C)
          Length = 1239

 Score = 30.4 bits (67), Expect = 5.2
 Identities = 18/52 (34%), Positives = 26/52 (50%)
 Frame = +3

Query: 171 INIISLGLIPLGSPRDLRSLLTLQYRPPILHHYCRRERRSRMLAHGRQATMV 326
           +++++L L P G PR     L  Q   P+L  YC RE    + A   QA +V
Sbjct: 196 LDVLTLELGP-GGPRARTQRLLRQVDAPVLVAYCSREEAEVLFAEAAQAGLV 246



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>FZD10_HUMAN (Q9ULW2) Frizzled 10 precursor (Frizzled-10) (Fz-10) (hFz10) (FzE7)|
          Length = 581

 Score = 30.4 bits (67), Expect = 5.2
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +1

Query: 406 PLFPPPRPAAVDEEPPKFSCRAKGGDEEPPKF 501
           PLF P RP +  E P K     +GG + P KF
Sbjct: 167 PLFRPQRPHSAQEHPLKDGGPGRGGCDNPGKF 198



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>ENA_DROME (Q8T4F7) Protein enabled|
          Length = 834

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +3

Query: 207 SPRDLRSLLTLQYRPPILHHYCRRERRSRMLAH 305
           S  +L+ L  L YR P+ HHY ++E R R   H
Sbjct: 82  SIEELQELDLLDYRHPMYHHYQQQELRQRYHEH 114



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>PPNK_BIFLO (Q8G5G8) Probable inorganic polyphosphate/ATP-NAD kinase (EC|
           2.7.1.23) (Poly(P)/ATP NAD kinase)
          Length = 342

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 17/53 (32%), Positives = 21/53 (39%)
 Frame = +3

Query: 333 CRGRRVDALPNATACTCRRPTEEHAIVSSSATGCRRRGAAEVQLPGQGWRRGA 491
           C GRR  ALP  T    R   +   +   S      R  ++  LP  GWR  A
Sbjct: 239 CDGRRQRALPQGTRVMVRESRDTLRLARLSGVPFTNRLVSKFDLPVVGWREHA 291



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>SYF2_DEBHA (Q6BVE0) Pre-mRNA-splicing factor SYF2|
          Length = 231

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 2/87 (2%)
 Frame = -2

Query: 597 KKDERPKLQESTKEYLFFFFPLQNG*FHQKATELRRLLVATLGPATELRRL--LVDGSRS 424
           KK E  KL    K+ LF  +  Q      K+ E +++    L    E  +L  +  G   
Sbjct: 41  KKQESEKLN---KQELFQDYKQQK----LKSIEYKKIEQKKLNAELEQEKLDSIEKGEDF 93

Query: 423 RRRKQWRVLRWVVDRCRRWRSATRQLG 343
            R++ W    W ++ C +W   T+Q G
Sbjct: 94  ERKQNWD---WTIEDCEKWEKKTKQKG 117


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,205,385
Number of Sequences: 219361
Number of extensions: 1835208
Number of successful extensions: 5582
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5575
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6769072002
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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