ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags10a19
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC145811.2| Oryza sativa (japonica cultivar-group) chromosome... 165 2e-37
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 165 2e-37
3emb|AL731878.4|CNS08C8I Oryza sativa chromosome 3, . BAC OSJNBb0... 165 2e-37
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 165 2e-37
5dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 157 6e-35
6dbj|AP005642.3| Oryza sativa (japonica cultivar-group) genomic D... 157 6e-35
7dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 149 1e-32
8dbj|AP005658.3| Oryza sativa (japonica cultivar-group) genomic D... 149 1e-32
9gb|AC104200.12| Mus musculus chromosome 13, clone RP24-512M2, co... 44 0.60
10gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, c... 44 0.60
11gb|AC183990.2| Pan troglodytes BAC clone CH251-134O11 from chrom... 42 2.4
12gb|AC092100.5| Homo sapiens BAC clone RP11-666G4 from 7, complet... 42 2.4
13gb|AC132867.6| Mus musculus chromosome 1, clone RP24-388I23, com... 42 2.4
14emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome 42 2.4
15gb|AC118643.6| Mus musculus chromosome 1, clone RP24-113H21, com... 42 2.4
16gb|AC002549.1|AC002549 Homo sapiens Xp22 BAC GS-377014 (Genome S... 42 2.4
17gb|AC152418.5| Mus musculus BAC clone RP23-7L11 from chromosome ... 40 9.4
18gb|AC116850.10| Mus musculus chromosome 8, clone RP24-396C10, co... 40 9.4
19gb|BC046297.1| Mus musculus RAB3 GTPase activating protein subun... 40 9.4
20gb|AC087103.3| Papio anubis clone RP41-353B7, complete sequence 40 9.4
21gb|AC115738.9| Mus musculus chromosome 3, clone RP23-474P24, com... 40 9.4
22gb|AC124582.4| Mus musculus BAC clone RP23-120A15 from 6, comple... 40 9.4
23ref|NM_178690.2| Mus musculus RAB3 GTPase activating protein sub... 40 9.4
24emb|AL731575.3| Human DNA sequence from clone RP11-328K22 on chr... 40 9.4
25gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome 40 9.4
26gb|AC110591.7| Homo sapiens chromosome 18, clone CTD-2504O24, co... 40 9.4
27gb|AC129263.6| Rattus norvegicus 2 BAC CH230-258E4 (Children's H... 40 9.4
28gb|AC116002.5| Homo sapiens chromosome 18, clone RP11-182L8, com... 40 9.4
29emb|CR457462.13| Zebrafish DNA sequence from clone CH211-1O7 in ... 40 9.4
30gb|AC135960.14| Pan troglodytes clone rp43-55o12, complete sequence 40 9.4
31gb|AC008134.3| Homo sapiens 3q26.2-27 BAC RPCI11-263C16 (Roswell... 40 9.4
32dbj|AK134604.1| Mus musculus adult male medulla oblongata cDNA, ... 40 9.4
33dbj|AK164523.1| Mus musculus 13 days embryo heart cDNA, RIKEN fu... 40 9.4
34gb|AC055738.16| Homo sapiens 3 BAC RP11-234G11 (Roswell Park Can... 40 9.4
35dbj|AK170768.1| Mus musculus NOD-derived CD11c +ve dendritic cel... 40 9.4
36gb|DP000005.1| Macaca mulatta target 1 genomic scaffold 40 9.4
37dbj|AK080432.1| Mus musculus 7 days neonate cerebellum cDNA, RIK... 40 9.4
38gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 40 9.4
39gb|AC000068.2| Homo sapiens Chromosome 22q11.2 Cosmid Clone 102g... 40 9.4
40dbj|AK076244.1| Mus musculus 0 day neonate skin cDNA, RIKEN full... 40 9.4
41dbj|AK076399.1| Mus musculus 10 days neonate skin cDNA, RIKEN fu... 40 9.4
42gb|DP000029.1| Cercopithecus aethiops target 1 genomic scaffold 40 9.4
43dbj|AK172881.1| Mus musculus mRNA for mKIAA0066 protein 40 9.4
44gb|AC083874.2|AC083874 Homo sapiens chromosome 7 clone RP11-792L... 40 9.4
45dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome 40 9.4
46dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 9.4
47gb|AC153610.3| Mus musculus 6 BAC RP23-271E2 (Roswell Park Cance... 40 9.4
48gb|AC150803.4| Macaca mulatta clone CH250-537P21, complete sequence 40 9.4
49emb|BX640589.8| Zebrafish DNA sequence from clone CH211-222H13 i... 40 9.4
50emb|AL121841.5|CNS01DSS Human chromosome 14 DNA sequence BAC R-8... 40 9.4
51gb|AC114602.16| Mus musculus chromosome 8, clone RP23-339B16, co... 40 9.4
52gb|AC138725.3| Cercopithecus aethiops clone CH252-336C2, complet... 40 9.4
53gb|AC150745.2| Mus musculus BAC clone RP24-77E13 from 7, complet... 40 9.4 
>gb|AC145811.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
            OSJNBb0088L13 map near C50029S, complete sequence
          Length = 129900

 Score =  165 bits (83), Expect = 2e-37
 Identities = 216/259 (83%), Gaps = 1/259 (0%)
 Strand = Plus / Plus

                                                                        
Query: 55   ccccttctagcaagtaagccgccaacaacggcttggtacccttcagcagtcatcagtgta 114
            ||||||||| ||||||||||| | || | |||||||||||||||| || ||||  ||| |
Sbjct: 4897 ccccttctatcaagtaagccgtcgacgatggcttggtacccttcaccactcatttgtgca 4956

                                                                        
Query: 115  tcattatacgttcatgttgtacgctgctcaatgcacaattctaacaagcaagcactatta 174
             |||||||||| | |  | ||||| ||||||||||||| ||||||||||||||| |||||
Sbjct: 4957 ccattatacgtgcctactctacgccgctcaatgcacaaatctaacaagcaagcattatta 5016

                                                                        
Query: 175  acataatttcattgggcttgattcctttgggctcaccgagggacctacgaagcttgctaa 234
            || | ||| ||||||||| || |   || ||||||||| ||| ||  ||||||| || ||
Sbjct: 5017 acttcattccattgggctcgactagctt-ggctcaccgggggtccgccgaagctcgcaaa 5075

                                                                        
Query: 235  ctcttcaatatcgtcctccaattcttcatcattattgtcgaagggagcgtcggagtcgga 294
            ||| || | ||| ||||||||||||||||| | ||||| |||||||||| ||||| ||||
Sbjct: 5076 ctcctccacatcatcctccaattcttcatcttcattgttgaagggagcgccggagccgga 5135

                               
Query: 295  tgcttgcccacggacggca 313
            |||||||||||||||||||
Sbjct: 5136 tgcttgcccacggacggca 5154
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  165 bits (83), Expect = 2e-37
 Identities = 216/259 (83%), Gaps = 1/259 (0%)
 Strand = Plus / Plus

                                                                            
Query: 55       ccccttctagcaagtaagccgccaacaacggcttggtacccttcagcagtcatcagtgta 114
                ||||||||| ||||||||||| | || | |||||||||||||||| || ||||  ||| |
Sbjct: 24771201 ccccttctatcaagtaagccgtcgacgatggcttggtacccttcaccactcatttgtgca 24771260

                                                                            
Query: 115      tcattatacgttcatgttgtacgctgctcaatgcacaattctaacaagcaagcactatta 174
                 |||||||||| | |  | ||||| ||||||||||||| ||||||||||||||| |||||
Sbjct: 24771261 ccattatacgtgcctactctacgccgctcaatgcacaaatctaacaagcaagcattatta 24771320

                                                                            
Query: 175      acataatttcattgggcttgattcctttgggctcaccgagggacctacgaagcttgctaa 234
                || | ||| ||||||||| || |   || ||||||||| ||| ||  ||||||| || ||
Sbjct: 24771321 acttcattccattgggctcgactagctt-ggctcaccgggggtccgccgaagctcgcaaa 24771379

                                                                            
Query: 235      ctcttcaatatcgtcctccaattcttcatcattattgtcgaagggagcgtcggagtcgga 294
                ||| || | ||| ||||||||||||||||| | ||||| |||||||||| ||||| ||||
Sbjct: 24771380 ctcctccacatcatcctccaattcttcatcttcattgttgaagggagcgccggagccgga 24771439

                                   
Query: 295      tgcttgcccacggacggca 313
                |||||||||||||||||||
Sbjct: 24771440 tgcttgcccacggacggca 24771458
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>emb|AL731878.4|CNS08C8I Oryza sativa chromosome 3, . BAC OSJNBb0116P11 of library OSJNBb from
             chromosome 3 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 128559

 Score =  165 bits (83), Expect = 2e-37
 Identities = 216/259 (83%), Gaps = 1/259 (0%)
 Strand = Plus / Plus

                                                                         
Query: 55    ccccttctagcaagtaagccgccaacaacggcttggtacccttcagcagtcatcagtgta 114
             ||||||||| ||||||||||| | || | |||||||||||||||| || ||||  ||| |
Sbjct: 56613 ccccttctatcaagtaagccgtcgacgatggcttggtacccttcaccactcatttgtgca 56672

                                                                         
Query: 115   tcattatacgttcatgttgtacgctgctcaatgcacaattctaacaagcaagcactatta 174
              |||||||||| | |  | ||||| ||||||||||||| ||||||||||||||| |||||
Sbjct: 56673 ccattatacgtgcctactctacgccgctcaatgcacaaatctaacaagcaagcattatta 56732

                                                                         
Query: 175   acataatttcattgggcttgattcctttgggctcaccgagggacctacgaagcttgctaa 234
             || | ||| ||||||||| || |   || ||||||||| ||| ||  ||||||| || ||
Sbjct: 56733 acttcattccattgggctcgactagctt-ggctcaccgggggtccgccgaagctcgcaaa 56791

                                                                         
Query: 235   ctcttcaatatcgtcctccaattcttcatcattattgtcgaagggagcgtcggagtcgga 294
             ||| || | ||| ||||||||||||||||| | ||||| |||||||||| ||||| ||||
Sbjct: 56792 ctcctccacatcatcctccaattcttcatcttcattgttgaagggagcgccggagccgga 56851

                                
Query: 295   tgcttgcccacggacggca 313
             |||||||||||||||||||
Sbjct: 56852 tgcttgcccacggacggca 56870
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  165 bits (83), Expect = 2e-37
 Identities = 216/259 (83%), Gaps = 1/259 (0%)
 Strand = Plus / Plus

                                                                            
Query: 55       ccccttctagcaagtaagccgccaacaacggcttggtacccttcagcagtcatcagtgta 114
                ||||||||| ||||||||||| | || | |||||||||||||||| || ||||  ||| |
Sbjct: 24860985 ccccttctatcaagtaagccgtcgacgatggcttggtacccttcaccactcatttgtgca 24861044

                                                                            
Query: 115      tcattatacgttcatgttgtacgctgctcaatgcacaattctaacaagcaagcactatta 174
                 |||||||||| | |  | ||||| ||||||||||||| ||||||||||||||| |||||
Sbjct: 24861045 ccattatacgtgcctactctacgccgctcaatgcacaaatctaacaagcaagcattatta 24861104

                                                                            
Query: 175      acataatttcattgggcttgattcctttgggctcaccgagggacctacgaagcttgctaa 234
                || | ||| ||||||||| || |   || ||||||||| ||| ||  ||||||| || ||
Sbjct: 24861105 acttcattccattgggctcgactagctt-ggctcaccgggggtccgccgaagctcgcaaa 24861163

                                                                            
Query: 235      ctcttcaatatcgtcctccaattcttcatcattattgtcgaagggagcgtcggagtcgga 294
                ||| || | ||| ||||||||||||||||| | ||||| |||||||||| ||||| ||||
Sbjct: 24861164 ctcctccacatcatcctccaattcttcatcttcattgttgaagggagcgccggagccgga 24861223

                                   
Query: 295      tgcttgcccacggacggca 313
                |||||||||||||||||||
Sbjct: 24861224 tgcttgcccacggacggca 24861242
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  157 bits (79), Expect = 6e-35
 Identities = 215/259 (83%), Gaps = 1/259 (0%)
 Strand = Plus / Plus

                                                                            
Query: 55       ccccttctagcaagtaagccgccaacaacggcttggtacccttcagcagtcatcagtgta 114
                ||||||||| ||||||||||| | || | ||||||||| |||||| || ||||  ||| |
Sbjct: 15953115 ccccttctatcaagtaagccgtcgacgatggcttggtatccttcaccactcatttgtgca 15953174

                                                                            
Query: 115      tcattatacgttcatgttgtacgctgctcaatgcacaattctaacaagcaagcactatta 174
                 |||||||||||| |  | ||||||||||||||||||||||||||||||||||| |||||
Sbjct: 15953175 ccattatacgttcctactctacgctgctcaatgcacaattctaacaagcaagcattatta 15953234

                                                                            
Query: 175      acataatttcattgggcttgattcctttgggctcaccgagggacctacgaagcttgctaa 234
                || | ||| |||| |||| || |   || ||||||||| ||| ||  || |||| || ||
Sbjct: 15953235 acttcattccattaggctcgactagctt-ggctcaccgggggtccgccggagctcgcaaa 15953293

                                                                            
Query: 235      ctcttcaatatcgtcctccaattcttcatcattattgtcgaagggagcgtcggagtcgga 294
                ||| || |  || ||||||||||||||||| | ||||| ||||||||||||||||  |||
Sbjct: 15953294 ctcctccacgtcatcctccaattcttcatcttcattgttgaagggagcgtcggagctgga 15953353

                                   
Query: 295      tgcttgcccacggacggca 313
                |||||||||||||||||||
Sbjct: 15953354 tgcttgcccacggacggca 15953372



 Score = 48.1 bits (24), Expect = 0.038
 Identities = 48/56 (85%)
 Strand = Plus / Plus

                                                                        
Query: 412      tttcctcctccgcgaccggctgccgtcgacgaggagccgccgaagttcagttgccg 467
                ||||||||||||||||| ||| | | ||| ||||||  ||| ||||||||||||||
Sbjct: 15953532 tttcctcctccgcgaccagctcctgccgaggaggagttgccaaagttcagttgccg 15953587
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>dbj|AP005642.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBa0040K22
          Length = 155832

 Score =  157 bits (79), Expect = 6e-35
 Identities = 215/259 (83%), Gaps = 1/259 (0%)
 Strand = Plus / Plus

                                                                         
Query: 55    ccccttctagcaagtaagccgccaacaacggcttggtacccttcagcagtcatcagtgta 114
             ||||||||| ||||||||||| | || | ||||||||| |||||| || ||||  ||| |
Sbjct: 34517 ccccttctatcaagtaagccgtcgacgatggcttggtatccttcaccactcatttgtgca 34576

                                                                         
Query: 115   tcattatacgttcatgttgtacgctgctcaatgcacaattctaacaagcaagcactatta 174
              |||||||||||| |  | ||||||||||||||||||||||||||||||||||| |||||
Sbjct: 34577 ccattatacgttcctactctacgctgctcaatgcacaattctaacaagcaagcattatta 34636

                                                                         
Query: 175   acataatttcattgggcttgattcctttgggctcaccgagggacctacgaagcttgctaa 234
             || | ||| |||| |||| || |   || ||||||||| ||| ||  || |||| || ||
Sbjct: 34637 acttcattccattaggctcgactagctt-ggctcaccgggggtccgccggagctcgcaaa 34695

                                                                         
Query: 235   ctcttcaatatcgtcctccaattcttcatcattattgtcgaagggagcgtcggagtcgga 294
             ||| || |  || ||||||||||||||||| | ||||| ||||||||||||||||  |||
Sbjct: 34696 ctcctccacgtcatcctccaattcttcatcttcattgttgaagggagcgtcggagctgga 34755

                                
Query: 295   tgcttgcccacggacggca 313
             |||||||||||||||||||
Sbjct: 34756 tgcttgcccacggacggca 34774



 Score = 48.1 bits (24), Expect = 0.038
 Identities = 48/56 (85%)
 Strand = Plus / Plus

                                                                     
Query: 412   tttcctcctccgcgaccggctgccgtcgacgaggagccgccgaagttcagttgccg 467
             ||||||||||||||||| ||| | | ||| ||||||  ||| ||||||||||||||
Sbjct: 34934 tttcctcctccgcgaccagctcctgccgaggaggagttgccaaagttcagttgccg 34989
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  149 bits (75), Expect = 1e-32
 Identities = 214/259 (82%), Gaps = 1/259 (0%)
 Strand = Plus / Minus

                                                                            
Query: 55       ccccttctagcaagtaagccgccaacaacggcttggtacccttcagcagtcatcagtgta 114
                ||||||||| ||||||||||| | || | |||||||||||||||| || ||||| ||| |
Sbjct: 22149530 ccccttctatcaagtaagccgtcgacgatggcttggtacccttcaccactcatctgtgca 22149471

                                                                            
Query: 115      tcattatacgttcatgttgtacgctgctcaatgcacaattctaacaagcaagcactatta 174
                |||||||||||   |  | ||||||||||||| ||||||||||||||||||||| |||||
Sbjct: 22149470 tcattatacgtgactactctacgctgctcaattcacaattctaacaagcaagcattatta 22149411

                                                                            
Query: 175      acataatttcattgggcttgattcctttgggctcaccgagggacctacgaagcttgctaa 234
                || | ||| ||||||||| || |   || ||||||||| ||| ||  || |||| || ||
Sbjct: 22149410 acttcattccattgggctcgactagctt-ggctcaccgggggtccgtcggagctcgcaaa 22149352

                                                                            
Query: 235      ctcttcaatatcgtcctccaattcttcatcattattgtcgaagggagcgtcggagtcgga 294
                ||| || | ||| ||||||||||||||| ||| ||||| |||||||||| ||||| | ||
Sbjct: 22149351 ctcctccacatcatcctccaattcttcagcatcattgttgaagggagcgccggagccaga 22149292

                                   
Query: 295      tgcttgcccacggacggca 313
                |||||| |||| |||||||
Sbjct: 22149291 tgcttgtccacagacggca 22149273



 Score = 48.1 bits (24), Expect = 0.038
 Identities = 48/56 (85%)
 Strand = Plus / Minus

                                                                        
Query: 412      tttcctcctccgcgaccggctgccgtcgacgaggagccgccgaagttcagttgccg 467
                ||||||||||||||||| ||| | ||||  ||||||||| | ||||||||| ||||
Sbjct: 22149098 tttcctcctccgcgaccagctcctgtcggggaggagccgtccaagttcagtcgccg 22149043
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>dbj|AP005658.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0620D11
          Length = 140245

 Score =  149 bits (75), Expect = 1e-32
 Identities = 214/259 (82%), Gaps = 1/259 (0%)
 Strand = Plus / Minus

                                                                         
Query: 55    ccccttctagcaagtaagccgccaacaacggcttggtacccttcagcagtcatcagtgta 114
             ||||||||| ||||||||||| | || | |||||||||||||||| || ||||| ||| |
Sbjct: 66829 ccccttctatcaagtaagccgtcgacgatggcttggtacccttcaccactcatctgtgca 66770

                                                                         
Query: 115   tcattatacgttcatgttgtacgctgctcaatgcacaattctaacaagcaagcactatta 174
             |||||||||||   |  | ||||||||||||| ||||||||||||||||||||| |||||
Sbjct: 66769 tcattatacgtgactactctacgctgctcaattcacaattctaacaagcaagcattatta 66710

                                                                         
Query: 175   acataatttcattgggcttgattcctttgggctcaccgagggacctacgaagcttgctaa 234
             || | ||| ||||||||| || |   || ||||||||| ||| ||  || |||| || ||
Sbjct: 66709 acttcattccattgggctcgactagctt-ggctcaccgggggtccgtcggagctcgcaaa 66651

                                                                         
Query: 235   ctcttcaatatcgtcctccaattcttcatcattattgtcgaagggagcgtcggagtcgga 294
             ||| || | ||| ||||||||||||||| ||| ||||| |||||||||| ||||| | ||
Sbjct: 66650 ctcctccacatcatcctccaattcttcagcatcattgttgaagggagcgccggagccaga 66591

                                
Query: 295   tgcttgcccacggacggca 313
             |||||| |||| |||||||
Sbjct: 66590 tgcttgtccacagacggca 66572



 Score = 48.1 bits (24), Expect = 0.038
 Identities = 48/56 (85%)
 Strand = Plus / Minus

                                                                     
Query: 412   tttcctcctccgcgaccggctgccgtcgacgaggagccgccgaagttcagttgccg 467
             ||||||||||||||||| ||| | ||||  ||||||||| | ||||||||| ||||
Sbjct: 66397 tttcctcctccgcgaccagctcctgtcggggaggagccgtccaagttcagtcgccg 66342
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>gb|AC104200.12| Mus musculus chromosome 13, clone RP24-512M2, complete sequence
          Length = 171912

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                               
Query: 518   aactaaccattttgtaaagggaaaaagaaaaaca 551
             |||| ||||| |||||||| ||||||||||||||
Sbjct: 36121 aacttaccatattgtaaagagaaaaagaaaaaca 36154
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>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence
          Length = 3131724

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                             
Query: 353     cgcgttgccgaacgccaccgcctgcacctg 382
               ||||| ||||||||||||||||||| ||||
Sbjct: 1202122 cgcgtcgccgaacgccaccgcctgcgcctg 1202093
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>gb|AC183990.2| Pan troglodytes BAC clone CH251-134O11 from chromosome 6, complete
             sequence
          Length = 166671

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 124   gttcatgttgtacgctgctcaatgc 148
             |||||||||||||||||| ||||||
Sbjct: 43759 gttcatgttgtacgctgcgcaatgc 43735
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>gb|AC092100.5| Homo sapiens BAC clone RP11-666G4 from 7, complete sequence
          Length = 122099

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 530   tgtaaagggaaaaagaaaaac 550
             |||||||||||||||||||||
Sbjct: 25251 tgtaaagggaaaaagaaaaac 25231
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>gb|AC132867.6| Mus musculus chromosome 1, clone RP24-388I23, complete sequence
          Length = 209151

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 528    tttgtaaagggaaaaagaaaa 548
              |||||||||||||||||||||
Sbjct: 173663 tttgtaaagggaaaaagaaaa 173643
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>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome
          Length = 2595221

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 421     ccgcgaccggctgccgtcgac 441
               |||||||||||||||||||||
Sbjct: 2212634 ccgcgaccggctgccgtcgac 2212614
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>gb|AC118643.6| Mus musculus chromosome 1, clone RP24-113H21, complete sequence
          Length = 184206

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 528    tttgtaaagggaaaaagaaaa 548
              |||||||||||||||||||||
Sbjct: 176482 tttgtaaagggaaaaagaaaa 176502
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>gb|AC002549.1|AC002549 Homo sapiens Xp22 BAC GS-377014 (Genome Systems Human BAC library)
             complete sequence
          Length = 163027

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 532   taaagggaaaaagaaaaacag 552
             |||||||||||||||||||||
Sbjct: 22366 taaagggaaaaagaaaaacag 22386
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>gb|AC152418.5| Mus musculus BAC clone RP23-7L11 from chromosome 7, complete sequence
          Length = 249571

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 526    attttgtaaagggaaaaagaaaaa 549
              ||||| ||||||||||||||||||
Sbjct: 188420 attttttaaagggaaaaagaaaaa 188443
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>gb|AC116850.10| Mus musculus chromosome 8, clone RP24-396C10, complete sequence
          Length = 147264

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 525    cattttgtaaagggaaaaag 544
              ||||||||||||||||||||
Sbjct: 115512 cattttgtaaagggaaaaag 115493
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>gb|BC046297.1| Mus musculus RAB3 GTPase activating protein subunit 1, mRNA (cDNA
           clone MGC:54893 IMAGE:6486170), complete cds
          Length = 3929

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 241 aatatcgtcctccaattcttcatc 264
           |||| |||||||||||||||||||
Sbjct: 296 aatagcgtcctccaattcttcatc 273
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>gb|AC087103.3| Papio anubis clone RP41-353B7, complete sequence
          Length = 172661

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 248   tcctccaattcttcatcatt 267
             ||||||||||||||||||||
Sbjct: 64455 tcctccaattcttcatcatt 64474
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>gb|AC115738.9| Mus musculus chromosome 3, clone RP23-474P24, complete sequence
          Length = 188507

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 524   ccattttgtaaagggaaaaagaaa 547
             |||||||| |||||||||||||||
Sbjct: 83699 ccattttgaaaagggaaaaagaaa 83676
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>gb|AC124582.4| Mus musculus BAC clone RP23-120A15 from 6, complete sequence
          Length = 183555

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 21    tacagttcagctagcaaatg 40
             ||||||||||||||||||||
Sbjct: 25489 tacagttcagctagcaaatg 25508
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>ref|NM_178690.2| Mus musculus RAB3 GTPase activating protein subunit 1 (Rab3gap1),
           mRNA
          Length = 4225

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 241 aatatcgtcctccaattcttcatc 264
           |||| |||||||||||||||||||
Sbjct: 312 aatagcgtcctccaattcttcatc 289
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>emb|AL731575.3| Human DNA sequence from clone RP11-328K22 on chromosome 10 Contains a
             novel gene, complete sequence
          Length = 96212

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 539   aaaaagaaaaacaggtactc 558
             ||||||||||||||||||||
Sbjct: 34008 aaaaagaaaaacaggtactc 34027
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>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 421     ccgcgaccggctgccgtcga 440
               ||||||||||||||||||||
Sbjct: 4132188 ccgcgaccggctgccgtcga 4132207
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>gb|AC110591.7| Homo sapiens chromosome 18, clone CTD-2504O24, complete sequence
          Length = 147651

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 154    tctaacaagcaagcactatt 173
              ||||||||||||||||||||
Sbjct: 113255 tctaacaagcaagcactatt 113236
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>gb|AC129263.6| Rattus norvegicus 2 BAC CH230-258E4 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 194958

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 538    gaaaaagaaaaacaggtact 557
              ||||||||||||||||||||
Sbjct: 166197 gaaaaagaaaaacaggtact 166178
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>gb|AC116002.5| Homo sapiens chromosome 18, clone RP11-182L8, complete sequence
          Length = 173233

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 154   tctaacaagcaagcactatt 173
             ||||||||||||||||||||
Sbjct: 39758 tctaacaagcaagcactatt 39739
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>emb|CR457462.13| Zebrafish DNA sequence from clone CH211-1O7 in linkage group 13, complete
              sequence
          Length = 166823

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 530    tgtaaagggaaaaagaaaaa 549
              ||||||||||||||||||||
Sbjct: 118250 tgtaaagggaaaaagaaaaa 118231
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>gb|AC135960.14| Pan troglodytes clone rp43-55o12, complete sequence
          Length = 157430

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 535   agggaaaaagaaaaacaggt 554
             ||||||||||||||||||||
Sbjct: 49676 agggaaaaagaaaaacaggt 49695
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>gb|AC008134.3| Homo sapiens 3q26.2-27 BAC RPCI11-263C16 (Roswell Park Cancer Institute
             Human BAC Library) complete sequence
          Length = 175132

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 530   tgtaaagggaaaaagaaaaa 549
             ||||||||||||||||||||
Sbjct: 77156 tgtaaagggaaaaagaaaaa 77175
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>dbj|AK134604.1| Mus musculus adult male medulla oblongata cDNA, RIKEN full-length
           enriched library, clone:6330445L19 product:hypothetical
           protein, full insert sequence
          Length = 4230

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 241 aatatcgtcctccaattcttcatc 264
           |||| |||||||||||||||||||
Sbjct: 312 aatagcgtcctccaattcttcatc 289
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>dbj|AK164523.1| Mus musculus 13 days embryo heart cDNA, RIKEN full-length enriched
           library, clone:D330022J16 product:hypothetical protein,
           full insert sequence
          Length = 3929

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 241 aatatcgtcctccaattcttcatc 264
           |||| |||||||||||||||||||
Sbjct: 311 aatagcgtcctccaattcttcatc 288
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>gb|AC055738.16| Homo sapiens 3 BAC RP11-234G11 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 157711

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 528   tttgtaaagggaaaaagaaaaaca 551
             |||||||||| |||||||||||||
Sbjct: 42659 tttgtaaaggcaaaaagaaaaaca 42636
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>dbj|AK170768.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN
           full-length enriched library, clone:F630119A03
           product:hypothetical protein, full insert sequence
          Length = 3920

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 241 aatatcgtcctccaattcttcatc 264
           |||| |||||||||||||||||||
Sbjct: 302 aatagcgtcctccaattcttcatc 279
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>gb|DP000005.1| Macaca mulatta target 1 genomic scaffold
          Length = 1678549

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 248     tcctccaattcttcatcatt 267
               ||||||||||||||||||||
Sbjct: 1625132 tcctccaattcttcatcatt 1625151
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>dbj|AK080432.1| Mus musculus 7 days neonate cerebellum cDNA, RIKEN full-length
           enriched library, clone:A730011N22 product:hypothetical
           protein, full insert sequence
          Length = 4225

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 241 aatatcgtcctccaattcttcatc 264
           |||| |||||||||||||||||||
Sbjct: 312 aatagcgtcctccaattcttcatc 289
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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 421     ccgcgaccggctgccgtcga 440
               ||||||||||||||||||||
Sbjct: 4498449 ccgcgaccggctgccgtcga 4498468
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>gb|AC000068.2| Homo sapiens Chromosome 22q11.2 Cosmid Clone 102g9 In DGCR Region,
             complete sequence
          Length = 43934

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 535   agggaaaaagaaaaacaggt 554
             ||||||||||||||||||||
Sbjct: 36403 agggaaaaagaaaaacaggt 36422
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>dbj|AK076244.1| Mus musculus 0 day neonate skin cDNA, RIKEN full-length enriched
           library, clone:4631402I02 product:hypothetical protein,
           full insert sequence
          Length = 3843

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 241 aatatcgtcctccaattcttcatc 264
           |||| |||||||||||||||||||
Sbjct: 294 aatagcgtcctccaattcttcatc 271
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>dbj|AK076399.1| Mus musculus 10 days neonate skin cDNA, RIKEN full-length enriched
           library, clone:4732493F09 product:hypothetical protein,
           full insert sequence
          Length = 3869

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 241 aatatcgtcctccaattcttcatc 264
           |||| |||||||||||||||||||
Sbjct: 313 aatagcgtcctccaattcttcatc 290
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>gb|DP000029.1| Cercopithecus aethiops target 1 genomic scaffold
          Length = 1825024

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 248     tcctccaattcttcatcatt 267
               ||||||||||||||||||||
Sbjct: 1651009 tcctccaattcttcatcatt 1651028
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>dbj|AK172881.1| Mus musculus mRNA for mKIAA0066 protein
          Length = 4228

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 241 aatatcgtcctccaattcttcatc 264
           |||| |||||||||||||||||||
Sbjct: 317 aatagcgtcctccaattcttcatc 294
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>gb|AC083874.2|AC083874 Homo sapiens chromosome 7 clone RP11-792L21, complete sequence
          Length = 186281

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 533    aaagggaaaaagaaaaacaggtac 556
              ||||||||||||||||| ||||||
Sbjct: 125764 aaagggaaaaagaaaaataggtac 125741
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>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome
          Length = 4659019

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 415    cctcctccgcgaccggctgc 434
              ||||||||||||||||||||
Sbjct: 934893 cctcctccgcgaccggctgc 934874
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 327     cgcgggtgccgcggccgccg 346
               ||||||||||||||||||||
Sbjct: 5722160 cgcgggtgccgcggccgccg 5722141
to top
>gb|AC153610.3| Mus musculus 6 BAC RP23-271E2 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 177392

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 532    taaagggaaaaagaaaaaca 551
              ||||||||||||||||||||
Sbjct: 107439 taaagggaaaaagaaaaaca 107458
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>gb|AC150803.4| Macaca mulatta clone CH250-537P21, complete sequence
          Length = 71130

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 248   tcctccaattcttcatcatt 267
             ||||||||||||||||||||
Sbjct: 17713 tcctccaattcttcatcatt 17732
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>emb|BX640589.8| Zebrafish DNA sequence from clone CH211-222H13 in linkage group 19,
            complete sequence
          Length = 99460

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 259  ttcatcattattgtcgaagg 278
            ||||||||||||||||||||
Sbjct: 9526 ttcatcattattgtcgaagg 9507
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>emb|AL121841.5|CNS01DSS Human chromosome 14 DNA sequence BAC R-850C20 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 207945

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 528    tttgtaaagggaaaaagaaaaaca 551
              |||||||||| |||||||||||||
Sbjct: 180249 tttgtaaaggcaaaaagaaaaaca 180272
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>gb|AC114602.16| Mus musculus chromosome 8, clone RP23-339B16, complete sequence
          Length = 196024

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 533   aaagggaaaaagaaaaacag 552
             ||||||||||||||||||||
Sbjct: 58860 aaagggaaaaagaaaaacag 58841
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>gb|AC138725.3| Cercopithecus aethiops clone CH252-336C2, complete sequence
          Length = 174407

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 248    tcctccaattcttcatcatt 267
              ||||||||||||||||||||
Sbjct: 171030 tcctccaattcttcatcatt 171049
to top
>gb|AC150745.2| Mus musculus BAC clone RP24-77E13 from 7, complete sequence
          Length = 232607

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 526    attttgtaaagggaaaaagaaaaa 549
              ||||| ||||||||||||||||||
Sbjct: 149245 attttttaaagggaaaaagaaaaa 149222


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,080,078
Number of Sequences: 3902068
Number of extensions: 6080078
Number of successful extensions: 115834
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 115127
Number of HSP's gapped (non-prelim): 703
length of query: 685
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 662
effective length of database: 17,143,297,704
effective search space: 11348863080048
effective search space used: 11348863080048
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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