>Y076_SYNY3 (Q55792) Hypothetical UPF0051 protein slr0076|
          Length = 453

 Score = 74.3 bits (181), Expect = 4e-13
 Identities = 38/85 (44%), Positives = 60/85 (70%)
 Frame = -3

Query: 723 VNRYAQQTDAGQQTKCLLLSPKAVVNVKPNLQIIADDVKCTHGAAISGELDPNELFYFQA 544
           V + AQ T+A Q  + L+LS KA +N KP LQI AD+VKC+HGA IS +L+ +E+FY ++
Sbjct: 353 VPQAAQLTNAQQLNRNLVLSSKARINTKPELQITADNVKCSHGATIS-QLEADEVFYLRS 411

Query: 543 RGVDANTATDALLFSFGAQVINRIP 469
           RG++   A   L+ +F  +++++IP
Sbjct: 412 RGLNDYDARHLLIDAFAGEILDQIP 436

>SUFD_ECOLI (P77689) Protein sufD|
          Length = 423

 Score = 65.9 bits (159), Expect = 1e-10
 Identities = 30/80 (37%), Positives = 51/80 (63%)
 Frame = -3

Query: 723 VNRYAQQTDAGQQTKCLLLSPKAVVNVKPNLQIIADDVKCTHGAAISGELDPNELFYFQA 544
           V ++A +TD       LL+   A V+ KP L+I ADDVKC+HGA + G +D  ++FY ++
Sbjct: 319 VAQHAIKTDGQMTNNNLLMGKLAEVDTKPQLEIYADDVKCSHGATV-GRIDDEQIFYLRS 377

Query: 543 RGVDANTATDALLFSFGAQV 484
           RG++   A   ++++F A++
Sbjct: 378 RGINQQDAQQMIIYAFAAEL 397

>Y1385_PYRHO (O50093) Hypothetical UPF0051 protein PH1385|
          Length = 446

 Score = 46.2 bits (108), Expect = 1e-04
 Identities = 27/81 (33%), Positives = 42/81 (51%)
 Frame = -3

Query: 711 AQQTDAGQQTKCLLLSPKAVVNVKPNLQIIADDVKCTHGAAISGELDPNELFYFQARGVD 532
           A++T        LLLS KA +   P L  + D+ + +H AAI G++   ELFY  +RG+ 
Sbjct: 348 AKKTKGHISCDALLLSDKARMETYPGLVSLVDEAELSHEAAI-GKIKEEELFYLMSRGLS 406

Query: 531 ANTATDALLFSFGAQVINRIP 469
              AT  ++  F   ++  IP
Sbjct: 407 EEKATQLIVKGFVEPMLKDIP 427

>Y074_SYNY3 (Q55790) Hypothetical UPF0051 protein slr0074|
          Length = 480

 Score = 42.7 bits (99), Expect = 0.001
 Identities = 22/73 (30%), Positives = 37/73 (50%)
 Frame = -3

Query: 687 QTKCLLLSPKAVVNVKPNLQIIADDVKCTHGAAISGELDPNELFYFQARGVDANTATDAL 508
           Q   +L+  +A  N  P +Q+  +  K  H A+ S ++  ++LFYF  RG+    A   L
Sbjct: 389 QCDSMLIGDRAAANTFPYIQVDNNTAKVEHEASTS-KIGEDQLFYFAQRGISEEDAVSML 447

Query: 507 LFSFGAQVINRIP 469
           +  F   V+N +P
Sbjct: 448 VSGFCKDVLNELP 460

>Y594_MYCLE (Q49682) Hypothetical UPF0051 protein ML0594|
          Length = 392

 Score = 42.7 bits (99), Expect = 0.001
 Identities = 23/80 (28%), Positives = 42/80 (52%)
 Frame = -3

Query: 711 AQQTDAGQQTKCLLLSPKAVVNVKPNLQIIADDVKCTHGAAISGELDPNELFYFQARGVD 532
           A  TD  +  + L+L+     +  PNL+I  D++     A+ +G  D  +LFY ++RG+ 
Sbjct: 286 ATGTDTFEVNRNLVLTNGVRADSVPNLEIETDEIVGAGHASATGRFDDEQLFYLRSRGIG 345

Query: 531 ANTATDALLFSFGAQVINRI 472
              A   L+  F  ++I++I
Sbjct: 346 EEQARRLLVRGFFGEIISKI 365

>YCF24_CYAPA (P48260) Hypothetical UPF0051 protein ycf24|
          Length = 486

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 23/73 (31%), Positives = 37/73 (50%)
 Frame = -3

Query: 687 QTKCLLLSPKAVVNVKPNLQIIADDVKCTHGAAISGELDPNELFYFQARGVDANTATDAL 508
           Q   LL+   +  N  P+LQI     K  H A+ S ++   ++FYF  RG++A  A   +
Sbjct: 395 QCDSLLIGDNSQANTFPHLQIKNPTAKVEHEASTS-KIGEEQIFYFLQRGINAEEAISLI 453

Query: 507 LFSFGAQVINRIP 469
           +  F  +V N +P
Sbjct: 454 ISGFCREVFNNLP 466

>YCF24_CYACA (Q9TLX2) Hypothetical UPF0051 protein ycf24|
          Length = 483

 Score = 40.8 bits (94), Expect = 0.004
 Identities = 23/78 (29%), Positives = 38/78 (48%)
 Frame = -3

Query: 702 TDAGQQTKCLLLSPKAVVNVKPNLQIIADDVKCTHGAAISGELDPNELFYFQARGVDANT 523
           +D   Q   LL+   +  N  PNL +     K  H A +S  +   ++FYFQ RG++   
Sbjct: 387 SDNRSQCDSLLIGKGSESNTYPNLHVHNSLSKVEHEAFVS-RIGEEQIFYFQQRGINIEE 445

Query: 522 ATDALLFSFGAQVINRIP 469
           A + ++  F   V N++P
Sbjct: 446 ALNMIVSGFCQDVCNKLP 463

>Y1497_MYCBO (P59973) Hypothetical UPF0051 protein Mb1497|
          Length = 397

 Score = 39.3 bits (90), Expect = 0.012
 Identities = 22/84 (26%), Positives = 42/84 (50%)
 Frame = -3

Query: 723 VNRYAQQTDAGQQTKCLLLSPKAVVNVKPNLQIIADDVKCTHGAAISGELDPNELFYFQA 544
           +   A  TD  +  + L+L+  A  +  PNL+I   ++     A+ +G  D  +LFY ++
Sbjct: 285 IRAQATGTDTFEVNRNLVLTDGARADSVPNLEIETGEIVGAGHASATGRFDDEQLFYLRS 344

Query: 543 RGVDANTATDALLFSFGAQVINRI 472
           RG+    A   ++  F  ++I +I
Sbjct: 345 RGIPEAQARRLVVRGFFGEIIAKI 368

>Y1462_MYCTU (O53153) Hypothetical UPF0051 protein Rv1462/MT1509|
          Length = 397

 Score = 39.3 bits (90), Expect = 0.012
 Identities = 22/84 (26%), Positives = 42/84 (50%)
 Frame = -3

Query: 723 VNRYAQQTDAGQQTKCLLLSPKAVVNVKPNLQIIADDVKCTHGAAISGELDPNELFYFQA 544
           +   A  TD  +  + L+L+  A  +  PNL+I   ++     A+ +G  D  +LFY ++
Sbjct: 285 IRAQATGTDTFEVNRNLVLTDGARADSVPNLEIETGEIVGAGHASATGRFDDEQLFYLRS 344

Query: 543 RGVDANTATDALLFSFGAQVINRI 472
           RG+    A   ++  F  ++I +I
Sbjct: 345 RGIPEAQARRLVVRGFFGEIIAKI 368

>YCF24_ANTSP (Q02857) Hypothetical UPF0051 protein in atpA 3'region (ORF 3)|
           (Fragment)
          Length = 297

 Score = 38.5 bits (88), Expect = 0.021
 Identities = 22/73 (30%), Positives = 36/73 (49%)
 Frame = -3

Query: 687 QTKCLLLSPKAVVNVKPNLQIIADDVKCTHGAAISGELDPNELFYFQARGVDANTATDAL 508
           Q   LLLS  +  N  P +Q      K  H A+ S ++   ++FYF  RG++   A   +
Sbjct: 206 QCDSLLLSNTSKANTFPYIQAQNPYTKIEHEASTS-KIGEEQIFYFLQRGINLENAISLM 264

Query: 507 LFSFGAQVINRIP 469
           +  F  +V+N +P
Sbjct: 265 ISGFCKEVLNELP 277

>YCF24_PORPU (P51240) Hypothetical UPF0051 protein ycf24 (ORF487)|
          Length = 487

 Score = 37.4 bits (85), Expect = 0.047
 Identities = 19/73 (26%), Positives = 35/73 (47%)
 Frame = -3

Query: 687 QTKCLLLSPKAVVNVKPNLQIIADDVKCTHGAAISGELDPNELFYFQARGVDANTATDAL 508
           Q   LL+   +  N  P +Q+     K  H A+ S ++  +++FYF  RG++   +   +
Sbjct: 396 QCDSLLIGQSSQANTFPYIQVQNPTAKVEHEASTS-KISEDQIFYFLQRGINLEESVSLM 454

Query: 507 LFSFGAQVINRIP 469
           +  F   V N +P
Sbjct: 455 ISGFCKDVFNELP 467

>YCF24_GUITH (O78473) Hypothetical UPF0051 protein ycf24|
          Length = 483

 Score = 36.6 bits (83), Expect = 0.081
 Identities = 20/73 (27%), Positives = 35/73 (47%)
 Frame = -3

Query: 687 QTKCLLLSPKAVVNVKPNLQIIADDVKCTHGAAISGELDPNELFYFQARGVDANTATDAL 508
           Q   +L+ P +  N  P +Q+     +  H A+ S +++  +LFYF  RG+    A   L
Sbjct: 392 QCDSMLIGPYSQANTYPYIQVSNAMSRVEHEASTS-KIEEEQLFYFLQRGISVEQAISLL 450

Query: 507 LFSFGAQVINRIP 469
           +  F   V  ++P
Sbjct: 451 ISGFCRDVFVKLP 463

>Y2365_ARCFU (O30305) Hypothetical UPF0051 protein AF2365|
          Length = 369

 Score = 36.2 bits (82), Expect = 0.11
 Identities = 21/73 (28%), Positives = 39/73 (53%)
 Frame = -3

Query: 687 QTKCLLLSPKAVVNVKPNLQIIADDVKCTHGAAISGELDPNELFYFQARGVDANTATDAL 508
           + K L+LS   +++  P L+    +V+ +H AAI G++    +FY  +RG+  + A  A+
Sbjct: 279 ECKGLMLSESGLIDAIPELEARYPNVELSHEAAI-GKIAEEGIFYLMSRGLSRDEAISAI 337

Query: 507 LFSFGAQVINRIP 469
           +  F    I  +P
Sbjct: 338 VRGFMEIEIKGLP 350

>CXA3_HUMAN (Q9Y6H8) Gap junction alpha-3 protein (Connexin-46) (Cx46)|
          Length = 434

 Score = 35.4 bits (80), Expect = 0.18
 Identities = 20/35 (57%), Positives = 25/35 (71%)
 Frame = +1

Query: 439 C*SLLLDGLKWNAVYHLGSKREKQGVGRRVGVDAS 543
           C SLLL+ L+   +YHLG K+ KQGV  R+G DAS
Sbjct: 211 CASLLLNMLE---IYHLGWKKLKQGVTSRLGPDAS 242

>Y1496_MYCBO (P67126) Hypothetical UPF0051 protein Mb1496 [Contains:|
           Endonuclease PI-MtuHIIP (EC 3.1.-.-) (Mtu pps1 intein)]
          Length = 846

 Score = 35.4 bits (80), Expect = 0.18
 Identities = 22/85 (25%), Positives = 41/85 (48%)
 Frame = -3

Query: 723 VNRYAQQTDAGQQTKCLLLSPKAVVNVKPNLQIIADDVKCTHGAAISGELDPNELFYFQA 544
           VN+ A  + +  +   LL+   +  +  P + I  DDV   H A +S ++  N+LFY  +
Sbjct: 743 VNKGAHGSRSSVKCDALLVDTVSRSDTYPYVDIREDDVTMGHEATVS-KVSENQLFYLMS 801

Query: 543 RGVDANTATDALLFSFGAQVINRIP 469
           RG+  + A   ++  F   +   +P
Sbjct: 802 RGLTEDEAMAMVVRGFVEPIAKELP 826

>Y1461_MYCTU (P67125) Hypothetical UPF0051 protein Rv1461/MT1508 [Contains:|
           Endonuclease PI-MtuHIIP (EC 3.1.-.-) (Mtu pps1 intein)]
          Length = 846

 Score = 35.4 bits (80), Expect = 0.18
 Identities = 22/85 (25%), Positives = 41/85 (48%)
 Frame = -3

Query: 723 VNRYAQQTDAGQQTKCLLLSPKAVVNVKPNLQIIADDVKCTHGAAISGELDPNELFYFQA 544
           VN+ A  + +  +   LL+   +  +  P + I  DDV   H A +S ++  N+LFY  +
Sbjct: 743 VNKGAHGSRSSVKCDALLVDTVSRSDTYPYVDIREDDVTMGHEATVS-KVSENQLFYLMS 801

Query: 543 RGVDANTATDALLFSFGAQVINRIP 469
           RG+  + A   ++  F   +   +P
Sbjct: 802 RGLTEDEAMAMVVRGFVEPIAKELP 826

>Y593_MYCLE (Q49689) Hypothetical UPF0051 protein ML0593 [Contains: Mle pps1|
            intein]
          Length = 869

 Score = 34.7 bits (78), Expect = 0.31
 Identities = 22/85 (25%), Positives = 41/85 (48%)
 Frame = -3

Query: 723  VNRYAQQTDAGQQTKCLLLSPKAVVNVKPNLQIIADDVKCTHGAAISGELDPNELFYFQA 544
            VN+ A  + +  +   LL+   +  +  P + I  DDV   H A +S ++  N+LFY  +
Sbjct: 766  VNKGAHGSRSSVKCDALLVDTISRSDTYPYVDIREDDVTMGHEATVS-KVSENQLFYLMS 824

Query: 543  RGVDANTATDALLFSFGAQVINRIP 469
            RG+  + A   ++  F   +   +P
Sbjct: 825  RGLAEDEAMAMVVRGFVEPIAKELP 849

>YCF24_GALSU (P35912) Hypothetical UPF0051 protein in atpA 3'region (ORF X)|
           (Fragment)
          Length = 221

 Score = 34.3 bits (77), Expect = 0.40
 Identities = 19/73 (26%), Positives = 34/73 (46%)
 Frame = -3

Query: 687 QTKCLLLSPKAVVNVKPNLQIIADDVKCTHGAAISGELDPNELFYFQARGVDANTATDAL 508
           Q   LL+   +  N  P +++        H A+IS +++  +LFYF  RG+    A   +
Sbjct: 130 QCDSLLIGNSSEANTFPYIEVYNRSSIIEHEASIS-KINEEKLFYFMQRGISIEEAISLI 188

Query: 507 LFSFGAQVINRIP 469
           +  F  +V   +P
Sbjct: 189 VSGFCKEVFTELP 201

>YQ21_CAEEL (Q09231) Hypothetical protein C09F5.1|
          Length = 571

 Score = 30.8 bits (68), Expect = 4.4
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
 Frame = +3

Query: 213 FTNNKQNLKRLEWYFLRQTINIRSSSRSPC---SVPKLPIVPAQLFPPQHKKSVEPLQRF 383
           FT    + +  +WY LRQT++ R +S S C    +P   +V  + +  +    V  L  F
Sbjct: 449 FTEEIDDCEGAQWYLLRQTVHARDASCSECYDFCLPDWAVVRKEKYEDESTLGVRRLNCF 508

>YCF24_ODOSI (P49530) Hypothetical UPF0051 protein ycf24 (ORF486)|
          Length = 486

 Score = 30.8 bits (68), Expect = 4.4
 Identities = 17/73 (23%), Positives = 32/73 (43%)
 Frame = -3

Query: 687 QTKCLLLSPKAVVNVKPNLQIIADDVKCTHGAAISGELDPNELFYFQARGVDANTATDAL 508
           Q   LL+   +  N  P + +     K  H A+ S ++   ++FYF  RG+      + +
Sbjct: 395 QCDSLLIGNLSNANTFPFISVQNPTAKIEHEASTS-KIGEEQIFYFLQRGIPIEKGVELM 453

Query: 507 LFSFGAQVINRIP 469
           +  F  +V   +P
Sbjct: 454 ISGFCQEVFTELP 466

>SSP1_NEUCR (O60045) Peptidyl-prolyl cis-trans isomerase ssp-1 (EC 5.2.1.8)|
           (PPIase ssp1)
          Length = 186

 Score = 30.8 bits (68), Expect = 4.4
 Identities = 19/56 (33%), Positives = 25/56 (44%)
 Frame = +3

Query: 237 KRLEWYFLRQTINIRSSSRSPCSVPKLPIVPAQLFPPQHKKSVEPLQRFPQGLINC 404
           K L +YF   T   R    S   V KL I  A+   P  ++  +  Q+ PQG I C
Sbjct: 19  KNLPYYFNSATKTSRWEPPSGTDVDKLKIYMAKYHSPTSQQQQQQQQQQPQGKIRC 74

>CXA3_MOUSE (Q64448) Gap junction alpha-3 protein (Connexin-46) (Cx46)|
          Length = 416

 Score = 29.6 bits (65), Expect = 9.9
 Identities = 17/35 (48%), Positives = 22/35 (62%)
 Frame = +1

Query: 439 C*SLLLDGLKWNAVYHLGSKREKQGVGRRVGVDAS 543
           C SL+L+ L+   +YHLG K+ KQGV      DAS
Sbjct: 217 CASLVLNMLE---IYHLGWKKLKQGVTNHFNPDAS 248

>CXA3_RAT (P29414) Gap junction alpha-3 protein (Connexin-46) (Cx46)|
          Length = 415

 Score = 29.6 bits (65), Expect = 9.9
 Identities = 17/35 (48%), Positives = 22/35 (62%)
 Frame = +1

Query: 439 C*SLLLDGLKWNAVYHLGSKREKQGVGRRVGVDAS 543
           C SL+L+ L+   +YHLG K+ KQGV      DAS
Sbjct: 217 CASLVLNMLE---IYHLGWKKLKQGVTNHFNPDAS 248


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,150,726
Number of Sequences: 219361
Number of extensions: 1738246
Number of successful extensions: 4140
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 4017
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4134
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7479594804
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)