ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags10a11 |
|---|---|
| Clone Library Name | barley_pub |
>RS3_ICTPU (Q90YS2) 40S ribosomal protein S3| Length = 245 Score = 82.8 bits (203), Expect = 2e-16 Identities = 39/52 (75%), Positives = 42/52 (80%) Frame = -1 Query: 363 VNEYIDAAVRHVLXRQGVLGIKVKIMLDWDPKGKLGPTTPLPDLVTIHPPKE 208 VN Y+D AVRHVL RQGVLGIKVKIML WDP GK+GP PLPD V+I PKE Sbjct: 164 VNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKE 215
>RS32_XENLA (P47835) 40S ribosomal protein S3-B (S1B)| Length = 246 Score = 81.6 bits (200), Expect = 4e-16 Identities = 38/52 (73%), Positives = 42/52 (80%) Frame = -1 Query: 363 VNEYIDAAVRHVLXRQGVLGIKVKIMLDWDPKGKLGPTTPLPDLVTIHPPKE 208 VN Y+D AVRHVL RQGVLGIKVKIML WDP GK+GP PLPD V+I PK+ Sbjct: 164 VNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKD 215
>RS31_XENLA (P02350) 40S ribosomal protein S3-A (S1A)| Length = 246 Score = 81.6 bits (200), Expect = 4e-16 Identities = 38/52 (73%), Positives = 42/52 (80%) Frame = -1 Query: 363 VNEYIDAAVRHVLXRQGVLGIKVKIMLDWDPKGKLGPTTPLPDLVTIHPPKE 208 VN Y+D AVRHVL RQGVLGIKVKIML WDP GK+GP PLPD V+I PK+ Sbjct: 164 VNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKD 215
>RS3_RAT (P62909) 40S ribosomal protein S3| Length = 243 Score = 81.6 bits (200), Expect = 4e-16 Identities = 38/52 (73%), Positives = 42/52 (80%) Frame = -1 Query: 363 VNEYIDAAVRHVLXRQGVLGIKVKIMLDWDPKGKLGPTTPLPDLVTIHPPKE 208 VN Y+D AVRHVL RQGVLGIKVKIML WDP GK+GP PLPD V+I PK+ Sbjct: 164 VNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKD 215
>RS3_MOUSE (P62908) 40S ribosomal protein S3| Length = 243 Score = 81.6 bits (200), Expect = 4e-16 Identities = 38/52 (73%), Positives = 42/52 (80%) Frame = -1 Query: 363 VNEYIDAAVRHVLXRQGVLGIKVKIMLDWDPKGKLGPTTPLPDLVTIHPPKE 208 VN Y+D AVRHVL RQGVLGIKVKIML WDP GK+GP PLPD V+I PK+ Sbjct: 164 VNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKD 215
>RS3_AMBME (P79891) 40S ribosomal protein S3| Length = 253 Score = 81.3 bits (199), Expect = 5e-16 Identities = 38/52 (73%), Positives = 42/52 (80%) Frame = -1 Query: 363 VNEYIDAAVRHVLXRQGVLGIKVKIMLDWDPKGKLGPTTPLPDLVTIHPPKE 208 VN Y+D AVRHVL RQGVLGIKVKIML WDP GK+GP PLPD V+I PK+ Sbjct: 164 VNYYVDTAVRHVLLRQGVLGIKVKIMLAWDPSGKIGPKKPLPDHVSIVEPKD 215
>RS3_PONPY (Q5R465) 40S ribosomal protein S3| Length = 243 Score = 81.3 bits (199), Expect = 5e-16 Identities = 38/52 (73%), Positives = 42/52 (80%) Frame = -1 Query: 363 VNEYIDAAVRHVLXRQGVLGIKVKIMLDWDPKGKLGPTTPLPDLVTIHPPKE 208 VN Y+D AVRHVL RQGVLGIKVKIML WDP GK+GP PLPD V+I PK+ Sbjct: 164 VNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKD 215
>RS3_HUMAN (P23396) 40S ribosomal protein S3| Length = 243 Score = 81.3 bits (199), Expect = 5e-16 Identities = 38/52 (73%), Positives = 42/52 (80%) Frame = -1 Query: 363 VNEYIDAAVRHVLXRQGVLGIKVKIMLDWDPKGKLGPTTPLPDLVTIHPPKE 208 VN Y+D AVRHVL RQGVLGIKVKIML WDP GK+GP PLPD V+I PK+ Sbjct: 164 VNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKD 215
>RS3_BOVIN (Q3T169) 40S ribosomal protein S3| Length = 243 Score = 81.3 bits (199), Expect = 5e-16 Identities = 38/52 (73%), Positives = 42/52 (80%) Frame = -1 Query: 363 VNEYIDAAVRHVLXRQGVLGIKVKIMLDWDPKGKLGPTTPLPDLVTIHPPKE 208 VN Y+D AVRHVL RQGVLGIKVKIML WDP GK+GP PLPD V+I PK+ Sbjct: 164 VNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKD 215
>RS3_DROME (Q06559) 40S ribosomal protein S3| Length = 246 Score = 75.9 bits (185), Expect = 2e-14 Identities = 34/58 (58%), Positives = 42/58 (72%) Frame = -1 Query: 360 NEYIDAAVRHVLXRQGVLGIKVKIMLDWDPKGKLGPTTPLPDLVTIHPPKEXDXLRPP 187 N+Y++ A RHVL RQGVLGIKVK+ML +DPK K+GP PLPD V++ PKE P Sbjct: 167 NDYVETATRHVLLRQGVLGIKVKVMLPYDPKNKIGPKKPLPDNVSVVEPKEEKIYETP 224
>RS3_MANSE (P48153) 40S ribosomal protein S3| Length = 243 Score = 70.9 bits (172), Expect = 7e-13 Identities = 36/73 (49%), Positives = 45/73 (61%), Gaps = 1/73 (1%) Frame = -1 Query: 360 NEYIDAAVRHVLXRQGVLGIKVKIMLDWDPKGKLGPTTPLPDLVTIHPPKEXDX-LRPPA 184 N+Y++ A RHVL RQGVLGIKVKIML WD +GK GP P PD + + PK+ L P + Sbjct: 166 NDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPAPLEPTS 225 Query: 183 LIEV*TPSSASXP 145 I P+ P Sbjct: 226 DIRSLAPAPLPQP 238
>RS3_CAEEL (P48152) 40S ribosomal protein S3| Length = 247 Score = 67.8 bits (164), Expect = 6e-12 Identities = 33/52 (63%), Positives = 39/52 (75%) Frame = -1 Query: 363 VNEYIDAAVRHVLXRQGVLGIKVKIMLDWDPKGKLGPTTPLPDLVTIHPPKE 208 VN+YI AVRHV RQGV+GIKVKIML +DP+G+ GP LPD V I P+E Sbjct: 166 VNDYIQQAVRHVQLRQGVIGIKVKIMLPYDPRGQNGPRNALPDHVQIVEPQE 217
>RS3_YEAST (P05750) 40S ribosomal protein S3 (YS3) (RP13)| Length = 239 Score = 62.8 bits (151), Expect = 2e-10 Identities = 35/61 (57%), Positives = 42/61 (68%) Frame = -1 Query: 363 VNEYIDAAVRHVLXRQGVLGIKVKIMLDWDPKGKLGPTTPLPDLVTIHPPKEXDXLRPPA 184 VN++ID A RHVL RQGVLGIKVKIM D K + GP LPD VTI PKE + + P+ Sbjct: 163 VNDFIDTATRHVLMRQGVLGIKVKIMRD-PAKSRTGPKA-LPDAVTIIEPKEEEPILAPS 220 Query: 183 L 181 + Sbjct: 221 V 221
>RS3_ENCCU (Q8SQM3) 40S ribosomal protein S3| Length = 228 Score = 58.5 bits (140), Expect = 4e-09 Identities = 27/52 (51%), Positives = 36/52 (69%) Frame = -1 Query: 363 VNEYIDAAVRHVLXRQGVLGIKVKIMLDWDPKGKLGPTTPLPDLVTIHPPKE 208 V +YI+ V +QGV+GI+V+IML +DP+G LGP PLPD +TI P E Sbjct: 175 VKDYINTGYATVETKQGVIGIQVRIMLPYDPEGVLGPNYPLPDRITILEPSE 226
>RS3_SCHPO (O60128) 40S ribosomal protein S3| Length = 249 Score = 56.6 bits (135), Expect = 1e-08 Identities = 29/57 (50%), Positives = 38/57 (66%) Frame = -1 Query: 357 EYIDAAVRHVLXRQGVLGIKVKIMLDWDPKGKLGPTTPLPDLVTIHPPKEXDXLRPP 187 ++ID+A RHVL RQGVLG+KVKIML P+ K LPD+V + PKE + + P Sbjct: 168 DFIDSATRHVLLRQGVLGVKVKIML---PEPKTRQKKSLPDIVVVLDPKEEEPITKP 221
>IL2RB_PANTR (Q38J84) Interleukin-2 receptor beta chain precursor (IL-2| receptor) (P70-75) (High affinity IL-2 receptor beta subunit) (CD122 antigen) Length = 551 Score = 33.5 bits (75), Expect = 0.13 Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 1/33 (3%) Frame = -1 Query: 303 IKVKIMLDWDPKGKLGPTTP-LPDLVTIHPPKE 208 ++ ++ DWDP+ LGP TP +PDLV PP E Sbjct: 459 LQERVPRDWDPQ-PLGPPTPGVPDLVDFQPPPE 490
>IL2RB_HUMAN (P14784) Interleukin-2 receptor beta chain precursor (IL-2| receptor) (P70-75) (p75) (High affinity IL-2 receptor beta subunit) (CD122 antigen) Length = 551 Score = 33.5 bits (75), Expect = 0.13 Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 1/33 (3%) Frame = -1 Query: 303 IKVKIMLDWDPKGKLGPTTP-LPDLVTIHPPKE 208 ++ ++ DWDP+ LGP TP +PDLV PP E Sbjct: 459 LQERVPRDWDPQ-PLGPPTPGVPDLVDFQPPPE 490
>RT03_ORYSA (P46773) Mitochondrial ribosomal protein S3| Length = 538 Score = 29.6 bits (65), Expect = 1.9 Identities = 13/33 (39%), Positives = 20/33 (60%) Frame = -1 Query: 360 NEYIDAAVRHVLXRQGVLGIKVKIMLDWDPKGK 262 N+ ID A+ V R G+ G+KV+I + KG+ Sbjct: 498 NQKIDYALAEVSTRNGISGVKVRISYSQNKKGR 530
>IL2RB_MACFA (Q38J85) Interleukin-2 receptor beta chain precursor (IL-2| receptor) (P70-75) (High affinity IL-2 receptor beta subunit) (CD122 antigen) Length = 551 Score = 29.6 bits (65), Expect = 1.9 Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%) Frame = -1 Query: 303 IKVKIMLDWDPKGKLGPTTP-LPDLVTIHPPKE 208 ++ ++ DWDP+ LGP TP +PDLV P E Sbjct: 459 LQERVPRDWDPQP-LGPPTPGVPDLVDFQPRPE 490
>NAPSA_MOUSE (O09043) Napsin-A precursor (EC 3.4.23.-) (Kidney-derived aspartic| protease-like protein) (KDAP-1) (KAP) Length = 419 Score = 29.6 bits (65), Expect = 1.9 Identities = 13/39 (33%), Positives = 21/39 (53%) Frame = -2 Query: 122 PSLFPILVTSGLCNVWLPSLXKFMCNASMLCCHFNYRLN 6 P F ++ +G N+W+PS C+ L C F++R N Sbjct: 83 PQNFTVVFDTGSSNLWVPST---RCHFFSLACWFHHRFN 118
>SSRP_BACCR (Q815L5) SsrA-binding protein| Length = 155 Score = 28.9 bits (63), Expect = 3.2 Identities = 13/27 (48%), Positives = 17/27 (62%) Frame = +1 Query: 25 WQHNIEALHINFXKEGNQTLHSPLVTR 105 W HN +HIN ++GN+ H PL TR Sbjct: 59 WVHN---MHINTYEQGNRFNHDPLRTR 82
>TBX6_MOUSE (P70327) T-box transcription factor TBX6 (T-box protein 6)| Length = 540 Score = 28.9 bits (63), Expect = 3.2 Identities = 13/22 (59%), Positives = 14/22 (63%) Frame = -1 Query: 282 DWDPKGKLGPTTPLPDLVTIHP 217 DW+P GK P LPD V IHP Sbjct: 157 DWEPSGKAEPR--LPDRVYIHP 176
>CBID_CHRVO (Q7NXR0) Putative cobalt-precorrin-6A synthase [deacetylating] (EC| 2.1.1.-) Length = 377 Score = 28.5 bits (62), Expect = 4.2 Identities = 22/49 (44%), Positives = 25/49 (51%) Frame = +1 Query: 157 TTGSLDLNQSRGAQLVLLLRGVDGDEVRQGGGRAKFALGVPVKHNLHLD 303 TTGS + A L+LLL GVD DEV F L VPV+ LD Sbjct: 23 TTGSCATAAVKAA-LMLLLDGVDADEVFISLPDPDFYLAVPVESVAWLD 70
>RT03_MAIZE (P27928) Mitochondrial ribosomal protein S3| Length = 559 Score = 28.5 bits (62), Expect = 4.2 Identities = 13/33 (39%), Positives = 19/33 (57%) Frame = -1 Query: 360 NEYIDAAVRHVLXRQGVLGIKVKIMLDWDPKGK 262 N+ ID A V R G+ G+KV+I + KG+ Sbjct: 519 NQKIDYAPAEVSTRDGISGVKVRISYSQNKKGR 551
>RS3_METKA (Q8TX35) 30S ribosomal protein S3P| Length = 227 Score = 28.1 bits (61), Expect = 5.5 Identities = 15/53 (28%), Positives = 25/53 (47%) Frame = -1 Query: 360 NEYIDAAVRHVLXRQGVLGIKVKIMLDWDPKGKLGPTTPLPDLVTIHPPKEXD 202 +EY+ + + G +G+ V+IM P LPD + I PP+E + Sbjct: 167 DEYMIEGYVQAVTKPGAIGVTVRIM---------PPDVELPDELEIRPPEEVE 210
>LATS2_HUMAN (Q9NRM7) Serine/threonine-protein kinase LATS2 (EC 2.7.11.1) (Large| tumor suppressor homolog 2) (Serine/threonine-protein kinase kpm) (Kinase phosphorylated during mitosis protein) (Warts-like kinase) Length = 1088 Score = 27.7 bits (60), Expect = 7.2 Identities = 19/60 (31%), Positives = 24/60 (40%), Gaps = 17/60 (28%) Frame = -1 Query: 273 PKGKLGPTTPLPDLVT-------IHPPKEXDXLRP----------PALIEV*TPSSASXP 145 P GK P+ P P+ VT +HP K LRP PA + P+ A P Sbjct: 418 PPGKAEPSLPAPNTVTAVTAAHILHPVKSVRVLRPEPQTAVGPSHPAWVPAPAPAPAPAP 477
>CATD_PIG (P00795) Cathepsin D precursor (EC 3.4.23.5) [Contains: Cathepsin D| light chain; Cathepsin D heavy chain] Length = 345 Score = 27.7 bits (60), Expect = 7.2 Identities = 14/61 (22%), Positives = 28/61 (45%), Gaps = 7/61 (11%) Frame = -2 Query: 167 LPVVQAXHXXAHHFG-------PSLFPILVTSGLCNVWLPSLXKFMCNASMLCCHFNYRL 9 +P V + A ++G P F ++ +G N+W+PS+ C + C +++ Sbjct: 3 IPEVLKNYMDAQYYGEIGIGTPPQCFTVVFDTGSSNLWVPSIH---CKLLDIACWIHHKY 59 Query: 8 N 6 N Sbjct: 60 N 60
>VIF_BIV27 (P19563) Virion infectivity factor (Q protein)| Length = 198 Score = 27.7 bits (60), Expect = 7.2 Identities = 13/32 (40%), Positives = 16/32 (50%) Frame = -1 Query: 336 RHVLXRQGVLGIKVKIMLDWDPKGKLGPTTPL 241 RH L R L + L W P G++ TTPL Sbjct: 148 RHSLQRLAALQLCTNACLCWYPLGRINDTTPL 179
>VIF_BIV06 (P19562) Virion infectivity factor (Q protein)| Length = 198 Score = 27.7 bits (60), Expect = 7.2 Identities = 13/32 (40%), Positives = 16/32 (50%) Frame = -1 Query: 336 RHVLXRQGVLGIKVKIMLDWDPKGKLGPTTPL 241 RH L R L + L W P G++ TTPL Sbjct: 148 RHSLQRLAALQLCTNACLCWYPLGRINDTTPL 179
>CATD_HUMAN (P07339) Cathepsin D precursor (EC 3.4.23.5) [Contains: Cathepsin D| light chain; Cathepsin D heavy chain] Length = 412 Score = 27.7 bits (60), Expect = 7.2 Identities = 14/61 (22%), Positives = 28/61 (45%), Gaps = 7/61 (11%) Frame = -2 Query: 167 LPVVQAXHXXAHHFG-------PSLFPILVTSGLCNVWLPSLXKFMCNASMLCCHFNYRL 9 +P V + A ++G P F ++ +G N+W+PS+ C + C +++ Sbjct: 67 IPEVLKNYMDAQYYGEIGIGTPPQCFTVVFDTGSSNLWVPSIH---CKLLDIACWIHHKY 123 Query: 8 N 6 N Sbjct: 124 N 124
>COBQ_SHEON (Q8EI15) Cobyric acid synthase| Length = 510 Score = 27.3 bits (59), Expect = 9.4 Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 3/65 (4%) Frame = +1 Query: 175 LNQSRGAQLVLLLRGVDGDEVRQGGGRAKFALGV-PVKHNLHLDTKNAL--SXKNVSNSC 345 +N+ RG + LL G+D E K LGV P H+LHLD ++AL S + SC Sbjct: 195 INRFRG-DISLLQSGIDWLEAYT----QKPVLGVLPYLHDLHLDAEDALTDSPTKQAKSC 249 Query: 346 INVLI 360 V + Sbjct: 250 FKVRV 254
>ARLY_SYNY3 (P73257) Argininosuccinate lyase (EC 4.3.2.1) (Arginosuccinase)| (ASAL) Length = 461 Score = 27.3 bits (59), Expect = 9.4 Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 5/76 (6%) Frame = +1 Query: 151 ACTTGSLDLNQSRGAQLVLLLRGVDGDEVRQGGGRAKFALGVPVKHNLHLDTK-----NA 315 +C TGS + Q + + L+RG G + G G+P+ +N L +A Sbjct: 273 SCATGSSIMPQKKNPDVPELIRGKAGRVMGHLQGMLVLMKGLPLAYNKDLQEDKEALFDA 332 Query: 316 LSXKNVSNSCINVLID 363 + VS + +L+D Sbjct: 333 VKTVQVSLEAMTILLD 348 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 42,468,655 Number of Sequences: 219361 Number of extensions: 698956 Number of successful extensions: 2017 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 1958 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2015 length of database: 80,573,946 effective HSP length: 96 effective length of database: 59,515,290 effective search space used: 1428366960 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
