| Clone Name | rbags10a10 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_483759.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1144 Score = 327 bits (165), Expect = 3e-86 Identities = 282/321 (87%) Strand = Plus / Minus Query: 344 tctagcacttgaagcccctgcaaaccattagccagaggatgaggatcaaaaacgagatgc 403 |||||||||||||||||| ||||| || |||||||||| ||| ||||| || | Sbjct: 871 tctagcacttgaagcccccgcaaataatcagccagaggaagagaatcaacgccgcaacag 812 Query: 404 caccaccgaccatcagcttaaacctcaggttctgaagccacatcttgcgcctgagctctc 463 ||||||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 811 caccacccaccatcaacttaaacctcaggttctgaagccacatcttacgcctgagctctc 752 Query: 464 tgccatgcctatggaagctgtcagcctgcgactgtaaggtttcggtcttgcccaccaaaa 523 | |||||||| ||||||||||||||||| || ||||||||||| |||||||| ||||||| Sbjct: 751 ttccatgcctgtggaagctgtcagcctgtgattgtaaggtttcagtcttgccgaccaaaa 692 Query: 524 gttcaatcttctcgccacgatctaatatcttctcgatgttgtccatcatgatccctttaa 583 | ||||||||||| ||||| || ||||||||||| |||||||||||||| |||||||| | Sbjct: 691 gctcaatcttctctccacgttccaatatcttctcaatgttgtccatcataatccctttga 632 Query: 584 cctctgaaagatgtgatttcaccttagagagcttgttaatttcctctggatgattaatac 643 |||| | || |||| |||||| || ||||||||| |||||||||||||||||||||||| Sbjct: 631 cctccgtgaggtgtgctttcactttggagagcttgctaatttcctctggatgattaatac 572 Query: 644 aatactgcatgtgatccttca 664 ||||| ||||||||||||||| Sbjct: 571 aatacagcatgtgatccttca 551
>ref|XM_507333.1| PREDICTED Oryza sativa (japonica cultivar-group), P0562A06.8 mRNA Length = 1187 Score = 327 bits (165), Expect = 3e-86 Identities = 282/321 (87%) Strand = Plus / Minus Query: 344 tctagcacttgaagcccctgcaaaccattagccagaggatgaggatcaaaaacgagatgc 403 |||||||||||||||||| ||||| || |||||||||| ||| ||||| || | Sbjct: 914 tctagcacttgaagcccccgcaaataatcagccagaggaagagaatcaacgccgcaacag 855 Query: 404 caccaccgaccatcagcttaaacctcaggttctgaagccacatcttgcgcctgagctctc 463 ||||||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 854 caccacccaccatcaacttaaacctcaggttctgaagccacatcttacgcctgagctctc 795 Query: 464 tgccatgcctatggaagctgtcagcctgcgactgtaaggtttcggtcttgcccaccaaaa 523 | |||||||| ||||||||||||||||| || ||||||||||| |||||||| ||||||| Sbjct: 794 ttccatgcctgtggaagctgtcagcctgtgattgtaaggtttcagtcttgccgaccaaaa 735 Query: 524 gttcaatcttctcgccacgatctaatatcttctcgatgttgtccatcatgatccctttaa 583 | ||||||||||| ||||| || ||||||||||| |||||||||||||| |||||||| | Sbjct: 734 gctcaatcttctctccacgttccaatatcttctcaatgttgtccatcataatccctttga 675 Query: 584 cctctgaaagatgtgatttcaccttagagagcttgttaatttcctctggatgattaatac 643 |||| | || |||| |||||| || ||||||||| |||||||||||||||||||||||| Sbjct: 674 cctccgtgaggtgtgctttcactttggagagcttgctaatttcctctggatgattaatac 615 Query: 644 aatactgcatgtgatccttca 664 ||||| ||||||||||||||| Sbjct: 614 aatacagcatgtgatccttca 594
>dbj|AK104800.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-A08, full insert sequence Length = 1144 Score = 327 bits (165), Expect = 3e-86 Identities = 282/321 (87%) Strand = Plus / Minus Query: 344 tctagcacttgaagcccctgcaaaccattagccagaggatgaggatcaaaaacgagatgc 403 |||||||||||||||||| ||||| || |||||||||| ||| ||||| || | Sbjct: 871 tctagcacttgaagcccccgcaaataatcagccagaggaagagaatcaacgccgcaacag 812 Query: 404 caccaccgaccatcagcttaaacctcaggttctgaagccacatcttgcgcctgagctctc 463 ||||||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 811 caccacccaccatcaacttaaacctcaggttctgaagccacatcttacgcctgagctctc 752 Query: 464 tgccatgcctatggaagctgtcagcctgcgactgtaaggtttcggtcttgcccaccaaaa 523 | |||||||| ||||||||||||||||| || ||||||||||| |||||||| ||||||| Sbjct: 751 ttccatgcctgtggaagctgtcagcctgtgattgtaaggtttcagtcttgccgaccaaaa 692 Query: 524 gttcaatcttctcgccacgatctaatatcttctcgatgttgtccatcatgatccctttaa 583 | ||||||||||| ||||| || ||||||||||| |||||||||||||| |||||||| | Sbjct: 691 gctcaatcttctctccacgttccaatatcttctcaatgttgtccatcataatccctttga 632 Query: 584 cctctgaaagatgtgatttcaccttagagagcttgttaatttcctctggatgattaatac 643 |||| | || |||| |||||| || ||||||||| |||||||||||||||||||||||| Sbjct: 631 cctccgtgaggtgtgctttcactttggagagcttgctaatttcctctggatgattaatac 572 Query: 644 aatactgcatgtgatccttca 664 ||||| ||||||||||||||| Sbjct: 571 aatacagcatgtgatccttca 551
>dbj|AK066924.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013089D14, full insert sequence Length = 1188 Score = 327 bits (165), Expect = 3e-86 Identities = 282/321 (87%) Strand = Plus / Minus Query: 344 tctagcacttgaagcccctgcaaaccattagccagaggatgaggatcaaaaacgagatgc 403 |||||||||||||||||| ||||| || |||||||||| ||| ||||| || | Sbjct: 915 tctagcacttgaagcccccgcaaataatcagccagaggaagagaatcaacgccgcaacag 856 Query: 404 caccaccgaccatcagcttaaacctcaggttctgaagccacatcttgcgcctgagctctc 463 ||||||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 855 caccacccaccatcaacttaaacctcaggttctgaagccacatcttacgcctgagctctc 796 Query: 464 tgccatgcctatggaagctgtcagcctgcgactgtaaggtttcggtcttgcccaccaaaa 523 | |||||||| ||||||||||||||||| || ||||||||||| |||||||| ||||||| Sbjct: 795 ttccatgcctgtggaagctgtcagcctgtgattgtaaggtttcagtcttgccgaccaaaa 736 Query: 524 gttcaatcttctcgccacgatctaatatcttctcgatgttgtccatcatgatccctttaa 583 | ||||||||||| ||||| || ||||||||||| |||||||||||||| |||||||| | Sbjct: 735 gctcaatcttctctccacgttccaatatcttctcaatgttgtccatcataatccctttga 676 Query: 584 cctctgaaagatgtgatttcaccttagagagcttgttaatttcctctggatgattaatac 643 |||| | || |||| |||||| || ||||||||| |||||||||||||||||||||||| Sbjct: 675 cctccgtgaggtgtgctttcactttggagagcttgctaatttcctctggatgattaatac 616 Query: 644 aatactgcatgtgatccttca 664 ||||| ||||||||||||||| Sbjct: 615 aatacagcatgtgatccttca 595
>gb|AY107354.1| Zea mays PCO130181 mRNA sequence Length = 1138 Score = 313 bits (158), Expect = 4e-82 Identities = 281/322 (87%) Strand = Plus / Minus Query: 343 ctctagcacttgaagcccctgcaaaccattagccagaggatgaggatcaaaaacgagatg 402 ||||| || ||||| |||||||| ||||| ||||| | ||| ||||||| | || ||| Sbjct: 872 ctctaacatttgaatcccctgcagaccatcagccaaatgataaggatcagagccgcaatg 813 Query: 403 ccaccaccgaccatcagcttaaacctcaggttctgaagccacatcttgcgcctgagctct 462 || ||||| |||||||||||||||||||||||||||||||||||||| ||||| | |||| Sbjct: 812 ccgccacccaccatcagcttaaacctcaggttctgaagccacatctttcgcctcaactct 753 Query: 463 ctgccatgcctatggaagctgtcagcctgcgactgtaaggtttcggtcttgcccaccaaa 522 ||||||||||| ||||||||||| ||||| ||||||| ||| || ||||| ||||||||| Sbjct: 752 ctgccatgcctgtggaagctgtccgcctgtgactgtagggtctctgtcttacccaccaaa 693 Query: 523 agttcaatcttctcgccacgatctaatatcttctcgatgttgtccatcatgatcccttta 582 || ||||||||||| || ||||| ||||||||||| ||||||||||||||||||||||| Sbjct: 692 agctcaatcttctccccgcgatccaatatcttctcaatgttgtccatcatgatccctttg 633 Query: 583 acctctgaaagatgtgatttcaccttagagagcttgttaatttcctctggatgattaata 642 || || || || || | ||||||||| ||||||||||||||||||||||||||||||| | Sbjct: 632 acatccgataggtgggctttcaccttggagagcttgttaatttcctctggatgattaaca 573 Query: 643 caatactgcatgtgatccttca 664 ||||||||||| || ||||||| Sbjct: 572 caatactgcatatggtccttca 551
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 143 bits (72), Expect = 8e-31 Identities = 129/148 (87%) Strand = Plus / Plus Query: 344 tctagcacttgaagcccctgcaaaccattagccagaggatgaggatcaaaaacgagatgc 403 |||||||||||||||||| ||||| || |||||||||| ||| ||||| || | Sbjct: 27949345 tctagcacttgaagcccccgcaaataatcagccagaggaagagaatcaacgccgcaacag 27949404 Query: 404 caccaccgaccatcagcttaaacctcaggttctgaagccacatcttgcgcctgagctctc 463 ||||||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 27949405 caccacccaccatcaacttaaacctcaggttctgaagccacatcttacgcctgagctctc 27949464 Query: 464 tgccatgcctatggaagctgtcagcctg 491 | |||||||| ||||||||||||||||| Sbjct: 27949465 ttccatgcctgtggaagctgtcagcctg 27949492 Score = 129 bits (65), Expect = 1e-26 Identities = 101/113 (89%) Strand = Plus / Plus Query: 552 cttctcgatgttgtccatcatgatccctttaacctctgaaagatgtgatttcaccttaga 611 |||||| |||||||||||||| |||||||| ||||| | || |||| |||||| || || Sbjct: 27950490 cttctcaatgttgtccatcataatccctttgacctccgtgaggtgtgctttcactttgga 27950549 Query: 612 gagcttgttaatttcctctggatgattaatacaatactgcatgtgatccttca 664 ||||||| ||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 27950550 gagcttgctaatttcctctggatgattaatacaatacagcatgtgatccttca 27950602 Score = 67.9 bits (34), Expect = 4e-08 Identities = 52/58 (89%) Strand = Plus / Plus Query: 496 tgtaaggtttcggtcttgcccaccaaaagttcaatcttctcgccacgatctaatatct 553 ||||||||||| |||||||| |||||||| ||||||||||| ||||| || ||||||| Sbjct: 27949583 tgtaaggtttcagtcttgccgaccaaaagctcaatcttctctccacgttccaatatct 27949640
>dbj|AP005524.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0562A06 Length = 154198 Score = 143 bits (72), Expect = 8e-31 Identities = 129/148 (87%) Strand = Plus / Plus Query: 344 tctagcacttgaagcccctgcaaaccattagccagaggatgaggatcaaaaacgagatgc 403 |||||||||||||||||| ||||| || |||||||||| ||| ||||| || | Sbjct: 26837 tctagcacttgaagcccccgcaaataatcagccagaggaagagaatcaacgccgcaacag 26896 Query: 404 caccaccgaccatcagcttaaacctcaggttctgaagccacatcttgcgcctgagctctc 463 ||||||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 26897 caccacccaccatcaacttaaacctcaggttctgaagccacatcttacgcctgagctctc 26956 Query: 464 tgccatgcctatggaagctgtcagcctg 491 | |||||||| ||||||||||||||||| Sbjct: 26957 ttccatgcctgtggaagctgtcagcctg 26984 Score = 129 bits (65), Expect = 1e-26 Identities = 101/113 (89%) Strand = Plus / Plus Query: 552 cttctcgatgttgtccatcatgatccctttaacctctgaaagatgtgatttcaccttaga 611 |||||| |||||||||||||| |||||||| ||||| | || |||| |||||| || || Sbjct: 27982 cttctcaatgttgtccatcataatccctttgacctccgtgaggtgtgctttcactttgga 28041 Query: 612 gagcttgttaatttcctctggatgattaatacaatactgcatgtgatccttca 664 ||||||| ||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 28042 gagcttgctaatttcctctggatgattaatacaatacagcatgtgatccttca 28094 Score = 67.9 bits (34), Expect = 4e-08 Identities = 52/58 (89%) Strand = Plus / Plus Query: 496 tgtaaggtttcggtcttgcccaccaaaagttcaatcttctcgccacgatctaatatct 553 ||||||||||| |||||||| |||||||| ||||||||||| ||||| || ||||||| Sbjct: 27075 tgtaaggtttcagtcttgccgaccaaaagctcaatcttctctccacgttccaatatct 27132
>gb|BT012892.1| Lycopersicon esculentum clone 113999R, mRNA sequence Length = 953 Score = 60.0 bits (30), Expect = 1e-05 Identities = 66/78 (84%) Strand = Plus / Minus Query: 515 ccaccaaaagttcaatcttctcgccacgatctaatatcttctcgatgttgtccatcatga 574 |||||||||||||||||||||| |||||||| | | ||| || ||||| |||||||| | Sbjct: 553 ccaccaaaagttcaatcttctccccacgatcaagaaccttttcaatgttttccatcatca 494 Query: 575 tccctttaacctctgaaa 592 |||||||| ||||||| Sbjct: 493 cacctttaacttctgaaa 476
>ref|NM_115290.2| Arabidopsis thaliana ATVAMP727 AT3G54300 (ATVAMP727) mRNA, complete cds Length = 1003 Score = 48.1 bits (24), Expect = 0.037 Identities = 33/36 (91%) Strand = Plus / Minus Query: 552 cttctcgatgttgtccatcatgatccctttaacctc 587 |||||| |||||||||||||||||||| || ||||| Sbjct: 644 cttctcaatgttgtccatcatgatccccttgacctc 609
>gb|BT013399.1| Lycopersicon esculentum clone 135708R, mRNA sequence Length = 1031 Score = 48.1 bits (24), Expect = 0.037 Identities = 108/136 (79%) Strand = Plus / Minus Query: 529 atcttctcgccacgatctaatatcttctcgatgttgtccatcatgatccctttaacctct 588 |||||||| |||||||| | | |||||| ||||| |||||||| | || ||||| ||| Sbjct: 679 atcttctctccacgatcaagaaccttctcaatgttttccatcataacacccttaacttct 620 Query: 589 gaaagatgtgatttcaccttagagagcttgttaatttcctctggatgattaatacaatac 648 |||| |||| ||||||||| | || ||| |||||||||| || || | | ||||||| Sbjct: 619 gaaacctgtgctttcaccttggcaagtttgctaatttcctcagggtgttcagcacaatac 560 Query: 649 tgcatgtgatccttca 664 ||||| || ||||||| Sbjct: 559 tgcatatgctccttca 544
>gb|BT012242.1| Arabidopsis thaliana At3g54300 gene, complete cds Length = 723 Score = 48.1 bits (24), Expect = 0.037 Identities = 33/36 (91%) Strand = Plus / Minus Query: 552 cttctcgatgttgtccatcatgatccctttaacctc 587 |||||| |||||||||||||||||||| || ||||| Sbjct: 510 cttctcaatgttgtccatcatgatccccttgacctc 475
>gb|BT011606.1| Arabidopsis thaliana At3g54300 mRNA, complete cds Length = 850 Score = 48.1 bits (24), Expect = 0.037 Identities = 33/36 (91%) Strand = Plus / Minus Query: 552 cttctcgatgttgtccatcatgatccctttaacctc 587 |||||| |||||||||||||||||||| || ||||| Sbjct: 533 cttctcaatgttgtccatcatgatccccttgacctc 498
>emb|AL132957.1|ATF24B22 Arabidopsis thaliana DNA chromosome 3, BAC clone F24B22 Length = 100285 Score = 48.1 bits (24), Expect = 0.037 Identities = 33/36 (91%) Strand = Plus / Plus Query: 552 cttctcgatgttgtccatcatgatccctttaacctc 587 |||||| |||||||||||||||||||| || ||||| Sbjct: 94534 cttctcaatgttgtccatcatgatccccttgacctc 94569
>emb|AJ549240.1|OSA549240 Oryza sativa (japonica cultivar-group) mRNA for synaptobrevin 1 (spb1 gene) Length = 979 Score = 48.1 bits (24), Expect = 0.037 Identities = 111/140 (79%) Strand = Plus / Minus Query: 523 agttcaatcttctcgccacgatctaatatcttctcgatgttgtccatcatgatcccttta 582 |||||||||||||| ||||| || | | |||||| ||||| |||||||| | ||||| Sbjct: 482 agttcaatcttctcaccacggtcaagaaccttctcaatgttttccatcataactcctttg 423 Query: 583 acctctgaaagatgtgatttcaccttagagagcttgttaatttcctctggatgattaata 642 |||||||| | |||| ||| ||||| | |||||| | |||||||| || || | | | Sbjct: 422 acctctgagacttgtgctttgacctttgcaagcttgctgatttcctcagggtggtccaca 363 Query: 643 caatactgcatgtgatcctt 662 |||||||||||||| ||||| Sbjct: 362 caatactgcatgtgctcctt 343
>emb|BX825174.1|CNS0A6G4 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL18ZD10 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 974 Score = 48.1 bits (24), Expect = 0.037 Identities = 33/36 (91%) Strand = Plus / Minus Query: 552 cttctcgatgttgtccatcatgatccctttaacctc 587 |||||| |||||||||||||||||||| || ||||| Sbjct: 617 cttctcaatgttgtccatcatgatccccttgacctc 582
>dbj|AK104653.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-311-C02, full insert sequence Length = 1184 Score = 48.1 bits (24), Expect = 0.037 Identities = 111/140 (79%) Strand = Plus / Minus Query: 523 agttcaatcttctcgccacgatctaatatcttctcgatgttgtccatcatgatcccttta 582 |||||||||||||| ||||| || | | |||||| ||||| |||||||| | ||||| Sbjct: 634 agttcaatcttctcaccacggtcaagaaccttctcaatgttttccatcataactcctttg 575 Query: 583 acctctgaaagatgtgatttcaccttagagagcttgttaatttcctctggatgattaata 642 |||||||| | |||| ||| ||||| | |||||| | |||||||| || || | | | Sbjct: 574 acctctgagacttgtgctttgacctttgcaagcttgctgatttcctcagggtggtccaca 515 Query: 643 caatactgcatgtgatcctt 662 |||||||||||||| ||||| Sbjct: 514 caatactgcatgtgctcctt 495
>dbj|AK099182.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023107K01, full insert sequence Length = 1164 Score = 48.1 bits (24), Expect = 0.037 Identities = 111/140 (79%) Strand = Plus / Minus Query: 523 agttcaatcttctcgccacgatctaatatcttctcgatgttgtccatcatgatcccttta 582 |||||||||||||| ||||| || | | |||||| ||||| |||||||| | ||||| Sbjct: 635 agttcaatcttctcaccacggtcaagaaccttctcaatgttttccatcataactcctttg 576 Query: 583 acctctgaaagatgtgatttcaccttagagagcttgttaatttcctctggatgattaata 642 |||||||| | |||| ||| ||||| | |||||| | |||||||| || || | | | Sbjct: 575 acctctgagacttgtgctttgacctttgcaagcttgctgatttcctcagggtggtccaca 516 Query: 643 caatactgcatgtgatcctt 662 |||||||||||||| ||||| Sbjct: 515 caatactgcatgtgctcctt 496
>dbj|AK060910.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-F10, full insert sequence Length = 1208 Score = 48.1 bits (24), Expect = 0.037 Identities = 111/140 (79%) Strand = Plus / Minus Query: 523 agttcaatcttctcgccacgatctaatatcttctcgatgttgtccatcatgatcccttta 582 |||||||||||||| ||||| || | | |||||| ||||| |||||||| | ||||| Sbjct: 637 agttcaatcttctcaccacggtcaagaaccttctcaatgttttccatcataactcctttg 578 Query: 583 acctctgaaagatgtgatttcaccttagagagcttgttaatttcctctggatgattaata 642 |||||||| | |||| ||| ||||| | |||||| | |||||||| || || | | | Sbjct: 577 acctctgagacttgtgctttgacctttgcaagcttgctgatttcctcagggtggtccaca 518 Query: 643 caatactgcatgtgatcctt 662 |||||||||||||| ||||| Sbjct: 517 caatactgcatgtgctcctt 498
>gb|AC150408.2| Branchiostoma floridae clone CH302-56A5, complete sequence Length = 180427 Score = 44.1 bits (22), Expect = 0.58 Identities = 22/22 (100%) Strand = Plus / Plus Query: 136 ctttccacaaagcttacacaag 157 |||||||||||||||||||||| Sbjct: 66939 ctttccacaaagcttacacaag 66960
>gb|BT017117.1| Zea mays clone EL01N0364C11.c mRNA sequence Length = 1550 Score = 44.1 bits (22), Expect = 0.58 Identities = 43/50 (86%) Strand = Plus / Minus Query: 523 agttcaatcttctcgccacgatctaatatcttctcgatgttgtccatcat 572 |||||||||||||||||||| || | | |||||| ||||| |||||||| Sbjct: 221 agttcaatcttctcgccacggtcaagaaccttctcaatgttttccatcat 172
>gb|AY106165.1| Zea mays PCO097999 mRNA sequence Length = 1184 Score = 44.1 bits (22), Expect = 0.58 Identities = 43/50 (86%) Strand = Plus / Minus Query: 523 agttcaatcttctcgccacgatctaatatcttctcgatgttgtccatcat 572 |||||||||||||||||||| || | | |||||| ||||| |||||||| Sbjct: 670 agttcaatcttctcgccacggtcaagaaccttctcaatgttttccatcat 621
>ref|NM_128872.2| Arabidopsis thaliana SAR1 (SYNAPTOBREVIN-RELATED PROTEIN 1) AT2G33120 (SAR1) transcript variant AT2G33120.1 mRNA, complete cds Length = 1188 Score = 42.1 bits (21), Expect = 2.3 Identities = 108/137 (78%) Strand = Plus / Minus Query: 517 accaaaagttcaatcttctcgccacgatctaatatcttctcgatgttgtccatcatgatc 576 |||||||| ||||||||||| ||||| || | | |||||| ||||| |||||||| | Sbjct: 694 accaaaagctcaatcttctcaccacggtcaagaaccttctcaatgttttccatcataaca 635 Query: 577 cctttaacctctgaaagatgtgatttcaccttagagagcttgttaatttcctctggatga 636 |||||||| || || | || | ||| ||||||| |||||| |||| || || |||||| Sbjct: 634 cctttaacttcagacacttgagctttaaccttagcaagcttgctaatctcatcaggatga 575 Query: 637 ttaatacaatactgcat 653 | || ||||||||||| Sbjct: 574 tccatgcaatactgcat 558
>ref|NM_001036392.1| Arabidopsis thaliana SAR1 (SYNAPTOBREVIN-RELATED PROTEIN 1) AT2G33120 (SAR1) transcript variant AT2G33120.2 mRNA, complete cds Length = 1222 Score = 42.1 bits (21), Expect = 2.3 Identities = 108/137 (78%) Strand = Plus / Minus Query: 517 accaaaagttcaatcttctcgccacgatctaatatcttctcgatgttgtccatcatgatc 576 |||||||| ||||||||||| ||||| || | | |||||| ||||| |||||||| | Sbjct: 718 accaaaagctcaatcttctcaccacggtcaagaaccttctcaatgttttccatcataaca 659 Query: 577 cctttaacctctgaaagatgtgatttcaccttagagagcttgttaatttcctctggatga 636 |||||||| || || | || | ||| ||||||| |||||| |||| || || |||||| Sbjct: 658 cctttaacttcagacacttgagctttaaccttagcaagcttgctaatctcatcaggatga 599 Query: 637 ttaatacaatactgcat 653 | || ||||||||||| Sbjct: 598 tccatgcaatactgcat 582
>gb|AC158615.6| Mus musculus 10 BAC RP23-256B24 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 217393 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 298 agaacatcaaatgacaaggaaaaaa 322 ||||||||||||| ||||||||||| Sbjct: 193368 agaacatcaaatggcaaggaaaaaa 193344
>gb|AY128288.1| Arabidopsis thaliana At2g33120/F25I18.14 mRNA, complete cds Length = 1020 Score = 42.1 bits (21), Expect = 2.3 Identities = 108/137 (78%) Strand = Plus / Minus Query: 517 accaaaagttcaatcttctcgccacgatctaatatcttctcgatgttgtccatcatgatc 576 |||||||| ||||||||||| ||||| || | | |||||| ||||| |||||||| | Sbjct: 626 accaaaagctcaatcttctcaccacggtcaagaaccttctcaatgttttccatcataaca 567 Query: 577 cctttaacctctgaaagatgtgatttcaccttagagagcttgttaatttcctctggatga 636 |||||||| || || | || | ||| ||||||| |||||| |||| || || |||||| Sbjct: 566 cctttaacttcagacacttgagctttaaccttagcaagcttgctaatctcatcaggatga 507 Query: 637 ttaatacaatactgcat 653 | || ||||||||||| Sbjct: 506 tccatgcaatactgcat 490
>gb|AC119675.2| Homo sapiens chromosome 1 clone RP4-731G4, complete sequence Length = 138939 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 428 tcaggttctgaagccacatct 448 ||||||||||||||||||||| Sbjct: 11963 tcaggttctgaagccacatct 11983
>gb|AY114706.1| Arabidopsis thaliana putative synaptobrevin (At2g33120) mRNA, complete cds Length = 720 Score = 42.1 bits (21), Expect = 2.3 Identities = 108/137 (78%) Strand = Plus / Minus Query: 517 accaaaagttcaatcttctcgccacgatctaatatcttctcgatgttgtccatcatgatc 576 |||||||| ||||||||||| ||||| || | | |||||| ||||| |||||||| | Sbjct: 488 accaaaagctcaatcttctcaccacggtcaagaaccttctcaatgttttccatcataaca 429 Query: 577 cctttaacctctgaaagatgtgatttcaccttagagagcttgttaatttcctctggatga 636 |||||||| || || | || | ||| ||||||| |||||| |||| || || |||||| Sbjct: 428 cctttaacttcagacacttgagctttaaccttagcaagcttgctaatctcatcaggatga 369 Query: 637 ttaatacaatactgcat 653 | || ||||||||||| Sbjct: 368 tccatgcaatactgcat 352
>gb|AY079037.1| Arabidopsis thaliana At2g33120/F25I18.14 mRNA, complete cds Length = 666 Score = 42.1 bits (21), Expect = 2.3 Identities = 108/137 (78%) Strand = Plus / Minus Query: 517 accaaaagttcaatcttctcgccacgatctaatatcttctcgatgttgtccatcatgatc 576 |||||||| ||||||||||| ||||| || | | |||||| ||||| |||||||| | Sbjct: 488 accaaaagctcaatcttctcaccacggtcaagaaccttctcaatgttttccatcataaca 429 Query: 577 cctttaacctctgaaagatgtgatttcaccttagagagcttgttaatttcctctggatga 636 |||||||| || || | || | ||| ||||||| |||||| |||| || || |||||| Sbjct: 428 cctttaacttcagacacttgagctttaaccttagcaagcttgctaatctcatcaggatga 369 Query: 637 ttaatacaatactgcat 653 | || ||||||||||| Sbjct: 368 tccatgcaatactgcat 352
>gb|AY072422.1| Arabidopsis thaliana putative synaptobrevin (At2g33120) mRNA, complete cds Length = 1085 Score = 42.1 bits (21), Expect = 2.3 Identities = 108/137 (78%) Strand = Plus / Minus Query: 517 accaaaagttcaatcttctcgccacgatctaatatcttctcgatgttgtccatcatgatc 576 |||||||| ||||||||||| ||||| || | | |||||| ||||| |||||||| | Sbjct: 629 accaaaagctcaatcttctcaccacggtcaagaaccttctcaatgttttccatcataaca 570 Query: 577 cctttaacctctgaaagatgtgatttcaccttagagagcttgttaatttcctctggatga 636 |||||||| || || | || | ||| ||||||| |||||| |||| || || |||||| Sbjct: 569 cctttaacttcagacacttgagctttaaccttagcaagcttgctaatctcatcaggatga 510 Query: 637 ttaatacaatactgcat 653 | || ||||||||||| Sbjct: 509 tccatgcaatactgcat 493
>gb|AF419564.1|AF419564 Arabidopsis thaliana At2g33120/F25I18.14 mRNA, complete cds Length = 1020 Score = 42.1 bits (21), Expect = 2.3 Identities = 108/137 (78%) Strand = Plus / Minus Query: 517 accaaaagttcaatcttctcgccacgatctaatatcttctcgatgttgtccatcatgatc 576 |||||||| ||||||||||| ||||| || | | |||||| ||||| |||||||| | Sbjct: 626 accaaaagctcaatcttctcaccacggtcaagaaccttctcaatgttttccatcataaca 567 Query: 577 cctttaacctctgaaagatgtgatttcaccttagagagcttgttaatttcctctggatga 636 |||||||| || || | || | ||| ||||||| |||||| |||| || || |||||| Sbjct: 566 cctttaacttcagacacttgagctttaaccttagcaagcttgctaatctcatcaggatga 507 Query: 637 ttaatacaatactgcat 653 | || ||||||||||| Sbjct: 506 tccatgcaatactgcat 490
>gb|AY086363.1| Arabidopsis thaliana clone 2443 mRNA, complete sequence Length = 1122 Score = 42.1 bits (21), Expect = 2.3 Identities = 108/137 (78%) Strand = Plus / Minus Query: 517 accaaaagttcaatcttctcgccacgatctaatatcttctcgatgttgtccatcatgatc 576 |||||||| ||||||||||| ||||| || | | |||||| ||||| |||||||| | Sbjct: 694 accaaaagctcaatcttctcaccacggtcaagaaccttctcaatgttttccatcataaca 635 Query: 577 cctttaacctctgaaagatgtgatttcaccttagagagcttgttaatttcctctggatga 636 |||||||| || || | || | ||| ||||||| |||||| |||| || || |||||| Sbjct: 634 cctttaacttcagacacttgagctttaaccttagcaagcttgctaatctcatcaggatga 575 Query: 637 ttaatacaatactgcat 653 | || ||||||||||| Sbjct: 574 tccatgcaatactgcat 558
>gb|AC153933.3| Mus musculus 10 BAC RP24-282I24 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 179847 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 298 agaacatcaaatgacaaggaaaaaa 322 ||||||||||||| ||||||||||| Sbjct: 82856 agaacatcaaatggcaaggaaaaaa 82832
>gb|CP000217.1| Drosophila melanogaster genomic scaffold 211000022280770 Length = 268584 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 622 atttcctctggatgattaata 642 ||||||||||||||||||||| Sbjct: 13576 atttcctctggatgattaata 13596
>gb|AC161793.9| Mus musculus chromosome 7, clone RP23-80J7, complete sequence Length = 268158 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 577 cctttaacctctgaaagatg 596 |||||||||||||||||||| Sbjct: 176343 cctttaacctctgaaagatg 176324
>gb|AC145291.2| Homo sapiens chromosome 8, clone XXfos-82799H6, complete sequence Length = 41721 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 286 gacacagtaaacagaacatcaaat 309 |||||||||||||| ||||||||| Sbjct: 33820 gacacagtaaacagcacatcaaat 33843
>emb|CR354549.7| Zebrafish DNA sequence from clone CH211-151O16 in linkage group 25, complete sequence Length = 136578 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 241 aacatagggaaagcataatt 260 |||||||||||||||||||| Sbjct: 121081 aacatagggaaagcataatt 121062
>emb|AL671969.39| Mouse DNA sequence from clone RP23-339O7 on chromosome 11 Contains part of a novel gene and the Nmu2r gene for neuromedin U receptor 2, complete sequence Length = 118473 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 607 ttagagagcttgttaatttc 626 |||||||||||||||||||| Sbjct: 33232 ttagagagcttgttaatttc 33251
>gb|BC033964.1| Homo sapiens cDNA clone IMAGE:5287919 Length = 1091 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 286 gacacagtaaacagaacatcaaat 309 |||||||||||||| ||||||||| Sbjct: 20 gacacagtaaacagcacatcaaat 43
>gb|AC110280.8| Homo sapiens chromosome 8, clone CTD-3232M19, complete sequence Length = 91099 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 286 gacacagtaaacagaacatcaaat 309 |||||||||||||| ||||||||| Sbjct: 26954 gacacagtaaacagcacatcaaat 26931
>emb|BX296538.9| Zebrafish DNA sequence from clone DKEY-275P19 in linkage group 25, complete sequence Length = 192787 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 148 cttacacaagtactccagat 167 |||||||||||||||||||| Sbjct: 71809 cttacacaagtactccagat 71790
>gb|AC026115.27| Homo sapiens 12 BAC RP11-1026F22 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 99545 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 384 gaggatcaaaaacgagatgc 403 |||||||||||||||||||| Sbjct: 38439 gaggatcaaaaacgagatgc 38420
>dbj|AK036756.1| Mus musculus adult female vagina cDNA, RIKEN full-length enriched library, clone:9930001G13 product:NEUROMEDIN U RECEPTOR TYPE 2, full insert sequence Length = 3277 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 607 ttagagagcttgttaatttc 626 |||||||||||||||||||| Sbjct: 1811 ttagagagcttgttaatttc 1792
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 274 atgcatgcacatgacacagt 293 |||||||||||||||||||| Sbjct: 14266723 atgcatgcacatgacacagt 14266742
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 313 aaggaaaaaagggcgaatga 332 |||||||||||||||||||| Sbjct: 21357108 aaggaaaaaagggcgaatga 21357089
>gb|AC027662.2|AC027662 Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0053G13, complete sequence Length = 138245 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 274 atgcatgcacatgacacagt 293 |||||||||||||||||||| Sbjct: 13998 atgcatgcacatgacacagt 14017
>gb|AC155822.2| Mus musculus BAC clone RP23-319J10 from chromosome 16, complete sequence Length = 192526 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 303 atcaaatgacaaggaaaaaagggc 326 |||||||||||| ||||||||||| Sbjct: 103196 atcaaatgacaaagaaaaaagggc 103219
>ref|NM_153079.2| Mus musculus neuromedin U receptor 2 (Nmur2), mRNA Length = 3277 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 607 ttagagagcttgttaatttc 626 |||||||||||||||||||| Sbjct: 1811 ttagagagcttgttaatttc 1792
>gb|AC027658.1| Oryza sativa (japonica cultivar-group) BAC nbxb0006I13 chromosome 10, complete sequence Length = 142737 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 274 atgcatgcacatgacacagt 293 |||||||||||||||||||| Sbjct: 138796 atgcatgcacatgacacagt 138815
>dbj|AP005883.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0435E12 Length = 143188 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 313 aaggaaaaaagggcgaatga 332 |||||||||||||||||||| Sbjct: 139643 aaggaaaaaagggcgaatga 139624
>dbj|AP004144.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1712_E04 Length = 110098 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 313 aaggaaaaaagggcgaatga 332 |||||||||||||||||||| Sbjct: 17061 aaggaaaaaagggcgaatga 17042
>emb|AM238653.1| Blattella germanica mRNA for ecdysone inducible protein 75 isoform A (e75 gene) Length = 3232 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 560 tgttgtccatcatgatccct 579 |||||||||||||||||||| Sbjct: 167 tgttgtccatcatgatccct 148
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 274 atgcatgcacatgacacagt 293 |||||||||||||||||||| Sbjct: 14274965 atgcatgcacatgacacagt 14274984
>emb|AL845163.6| Mouse DNA sequence from clone RP23-282J1 on chromosome 2, complete sequence Length = 196155 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 131 cccttctttccacaaagctt 150 |||||||||||||||||||| Sbjct: 167798 cccttctttccacaaagctt 167779
>gb|M90418.1|ATHSAR1 Arabidopsis thaliana synaptobrevin-related protein (SAR1) mRNA, complete cds Length = 1076 Score = 40.1 bits (20), Expect = 9.1 Identities = 47/56 (83%) Strand = Plus / Minus Query: 517 accaaaagttcaatcttctcgccacgatctaatatcttctcgatgttgtccatcat 572 |||||||| ||||||||||| ||||| || | | |||||| ||||| |||||||| Sbjct: 620 accaaaagctcaatcttctcaccacggtcaagaaccttctcaatgttttccatcat 565 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,797,642 Number of Sequences: 3902068 Number of extensions: 5797642 Number of successful extensions: 106059 Number of sequences better than 10.0: 54 Number of HSP's better than 10.0 without gapping: 48 Number of HSP's successfully gapped in prelim test: 6 Number of HSP's that attempted gapping in prelim test: 105849 Number of HSP's gapped (non-prelim): 204 length of query: 664 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 641 effective length of database: 17,143,297,704 effective search space: 10988853828264 effective search space used: 10988853828264 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)