ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbags8p22 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY846823.1| Triticum aestivum ribosomal protein L13a mRNA, complete cds Length = 666 Score = 504 bits (254), Expect = e-139 Identities = 289/301 (96%) Strand = Plus / Minus Query: 112 gatggcgcacaaaagctctgatctctcttagtatttgatcggggccaggctctccagctg 171 |||||||||| ||||||| ||||||||||||||||||||||||| ||| |||||||||| Sbjct: 666 gatggcgcacggaagctctaatctctcttagtatttgatcggggctaggatctccagctg 607 Query: 172 agttcccaacttctcctcggctgccttctcggccttgacgcggagcttcgccagctgctt 231 ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| Sbjct: 606 agttcccaacttctcctcggccgccttctcggccttgacgcggagcttcgccagttgctt 547 Query: 232 tctcctgtcgtacgagaccttggccttctccttcctcttttcctccagctccctgatggt 291 |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 546 tctcctgtcgtaggagaccttggccttctcctttctcttttcctccagctccctgatggt 487 Query: 292 gtcggngtagttccatccgacctccttggagagctggcccaggaggcagtacctgtgccc 351 ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 486 gtcggcgtagttccatccgacctccttggagagctggccgaggaggcagtacctgtgccc 427 Query: 352 aggctgcagcctcagaaccttgagcgcgtcgggaatgaccatgcgcttggtcctgtcgta 411 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 426 aggctgcagcctcagaaccttgagcgcgtcggggatgaccatgcgcttggtcctgtcgta 367 Query: 412 c 412 | Sbjct: 366 c 366
>ref|XM_469814.1| Oryza sativa (japonica cultivar-group), mRNA Length = 935 Score = 335 bits (169), Expect = 7e-89 Identities = 246/272 (90%) Strand = Plus / Minus Query: 141 agtatttgatcggggccaggctctccagctgagttcccaacttctcctcggctgccttct 200 ||||||||||||| || || |||||||||||| |||| |||||||||||||||||||| Sbjct: 692 agtatttgatcggagcaagaatctccagctgaggacccagcttctcctcggctgccttct 633 Query: 201 cggccttgacgcggagcttcgccagctgctttctcctgtcgtacgagaccttggccttct 260 | |||||||| || ||||||||||| ||||| |||||||| || | ||||||||||||| Sbjct: 632 cagccttgacacgcagcttcgccagttgcttcctcctgtcataggcaaccttggccttct 573 Query: 261 ccttcctcttttcctccagctccctgatggtgtcggngtagttccatccgacctccttgg 320 |||||||||| ||||| ||||||||||||||||| ||||||||| || |||||||||| Sbjct: 572 ccttcctcttctcctcaagctccctgatggtgtcatagtagttccagccaacctccttgg 513 Query: 321 agagctggcccaggaggcagtacctgtgcccaggctgcagcctcagaaccttgagcgcgt 380 |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 512 agagctggccgaggaggcagtacttgtgcccaggctgcagcctcagaaccttgagcgcgt 453 Query: 381 cgggaatgaccatgcgcttggtcctgtcgtac 412 |||| ||||||||||||||||||||||||||| Sbjct: 452 cggggatgaccatgcgcttggtcctgtcgtac 421
>dbj|AK106078.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-207-A04, full insert sequence Length = 1048 Score = 335 bits (169), Expect = 7e-89 Identities = 246/272 (90%) Strand = Plus / Minus Query: 141 agtatttgatcggggccaggctctccagctgagttcccaacttctcctcggctgccttct 200 ||||||||||||| || || |||||||||||| |||| |||||||||||||||||||| Sbjct: 702 agtatttgatcggagcaagaatctccagctgaggacccagcttctcctcggctgccttct 643 Query: 201 cggccttgacgcggagcttcgccagctgctttctcctgtcgtacgagaccttggccttct 260 | |||||||| || ||||||||||| ||||| |||||||| || | ||||||||||||| Sbjct: 642 cagccttgacacgcagcttcgccagttgcttcctcctgtcataggcaaccttggccttct 583 Query: 261 ccttcctcttttcctccagctccctgatggtgtcggngtagttccatccgacctccttgg 320 |||||||||| ||||| ||||||||||||||||| ||||||||| || |||||||||| Sbjct: 582 ccttcctcttctcctcaagctccctgatggtgtcatagtagttccagccaacctccttgg 523 Query: 321 agagctggcccaggaggcagtacctgtgcccaggctgcagcctcagaaccttgagcgcgt 380 |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 522 agagctggccgaggaggcagtacttgtgcccaggctgcagcctcagaaccttgagcgcgt 463 Query: 381 cgggaatgaccatgcgcttggtcctgtcgtac 412 |||| ||||||||||||||||||||||||||| Sbjct: 462 cggggatgaccatgcgcttggtcctgtcgtac 431
>dbj|AK103893.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033150E09, full insert sequence Length = 943 Score = 335 bits (169), Expect = 7e-89 Identities = 246/272 (90%) Strand = Plus / Minus Query: 141 agtatttgatcggggccaggctctccagctgagttcccaacttctcctcggctgccttct 200 ||||||||||||| || || |||||||||||| |||| |||||||||||||||||||| Sbjct: 702 agtatttgatcggagcaagaatctccagctgaggacccagcttctcctcggctgccttct 643 Query: 201 cggccttgacgcggagcttcgccagctgctttctcctgtcgtacgagaccttggccttct 260 | |||||||| || ||||||||||| ||||| |||||||| || | ||||||||||||| Sbjct: 642 cagccttgacacgcagcttcgccagttgcttcctcctgtcataggcaaccttggccttct 583 Query: 261 ccttcctcttttcctccagctccctgatggtgtcggngtagttccatccgacctccttgg 320 |||||||||| ||||| ||||||||||||||||| ||||||||| || |||||||||| Sbjct: 582 ccttcctcttctcctcaagctccctgatggtgtcatagtagttccagccaacctccttgg 523 Query: 321 agagctggcccaggaggcagtacctgtgcccaggctgcagcctcagaaccttgagcgcgt 380 |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 522 agagctggccgaggaggcagtacttgtgcccaggctgcagcctcagaaccttgagcgcgt 463 Query: 381 cgggaatgaccatgcgcttggtcctgtcgtac 412 |||| ||||||||||||||||||||||||||| Sbjct: 462 cggggatgaccatgcgcttggtcctgtcgtac 431
>gb|BT016389.1| Zea mays clone Contig222 mRNA sequence Length = 880 Score = 240 bits (121), Expect = 3e-60 Identities = 234/272 (86%) Strand = Plus / Minus Query: 141 agtatttgatcggggccaggctctccagctgagttcccaacttctcctcggctgccttct 200 |||| ||||| ||||| || |||||| ||||| ||||||||||||||||||||||||| Sbjct: 678 agtacttgataggggcaagaatctccaactgagaccccaacttctcctcggctgccttct 619 Query: 201 cggccttgacgcggagcttcgccagctgctttctcctgtcgtacgagaccttggccttct 260 |||||||||| || ||||| |||| ||||| |||| ||||| | ||||||||||||| Sbjct: 618 cggccttgacacgcagcttggccaattgcttcttcctctcgtaggcaaccttggccttct 559 Query: 261 ccttcctcttttcctccagctccctgatggtgtcggngtagttccatccgacctccttgg 320 |||||||||| ||||| || |||||||||||||| ||||||||| ||||||||||| | Sbjct: 558 ccttcctcttctcctcaagttccctgatggtgtcatggtagttccacccgacctccttag 499 Query: 321 agagctggcccaggaggcagtacctgtgcccaggctgcagcctcagaaccttgagcgcgt 380 |||||| ||| |||||||||||| |||| |||||||| |||||||||||||| || |||| Sbjct: 498 agagctcgccgaggaggcagtacttgtgtccaggctgtagcctcagaaccttaagagcgt 439 Query: 381 cgggaatgaccatgcgcttggtcctgtcgtac 412 | || |||||||| ||||||||| |||||||| Sbjct: 438 cagggatgaccatacgcttggtcttgtcgtac 407
>ref|XM_469811.1| Oryza sativa (japonica cultivar-group), mRNA Length = 947 Score = 196 bits (99), Expect = 4e-47 Identities = 122/130 (93%) Strand = Plus / Minus Query: 283 cctgatggtgtcggngtagttccatccgacctccttggagagctggcccaggaggcagta 342 |||||||||||| ||||||||| || |||||||||||||||||||| ||||||||||| Sbjct: 399 cctgatggtgtcatagtagttccagccaacctccttggagagctggccgaggaggcagta 340 Query: 343 cctgtgcccaggctgcagcctcagaaccttgagcgcgtcgggaatgaccatgcgcttggt 402 | |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 339 cttgtgcccaggctgcagcctcagaaccttgagcgcgtcggggatgaccatgcgcttggt 280 Query: 403 cctgtcgtac 412 |||||||||| Sbjct: 279 cctgtcgtac 270
>dbj|AK066603.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013071H21, full insert sequence Length = 2212 Score = 188 bits (95), Expect = 1e-44 Identities = 110/115 (95%) Strand = Plus / Minus Query: 298 gtagttccatccgacctccttggagagctggcccaggaggcagtacctgtgcccaggctg 357 ||||||||| || |||||||||||||||||||| |||||||||||| ||||||||||||| Sbjct: 576 gtagttccagccaacctccttggagagctggccgaggaggcagtacttgtgcccaggctg 517 Query: 358 cagcctcagaaccttgagcgcgtcgggaatgaccatgcgcttggtcctgtcgtac 412 ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 516 cagcctcagaaccttgagcgcgtcggggatgaccatgcgcttggtcctgtcgtac 462
>gb|BT017778.1| Zea mays clone EL01N0503C05.c mRNA sequence Length = 826 Score = 172 bits (87), Expect = 6e-40 Identities = 170/198 (85%) Strand = Plus / Minus Query: 215 agcttcgccagctgctttctcctgtcgtacgagaccttggccttctccttcctcttttcc 274 ||||| ||||||||||| ||||| || || | ||||| ||||||||||||||||| ||| Sbjct: 593 agcttggccagctgcttcctcctctcataggccaccttagccttctccttcctcttctcc 534 Query: 275 tccagctccctgatggtgtcggngtagttccatccgacctccttggagagctggcccagg 334 || ||||||||||||||||| ||||||||||||||||||||| || |||| || ||| Sbjct: 533 tcaagctccctgatggtgtcatggtagttccatccgacctccttagaaagctccccaagg 474 Query: 335 aggcagtacctgtgcccaggctgcagcctcagaaccttgagcgcgtcgggaatgaccatg 394 ||||||||| |||| || || ||||||||||||||||| || ||||| || ||||||| | Sbjct: 473 aggcagtacttgtgtcctggttgcagcctcagaaccttaagagcgtcagggatgaccagg 414 Query: 395 cgcttggtcctgtcgtac 412 ||||||||| |||||||| Sbjct: 413 cgcttggtcttgtcgtac 396
>ref|XM_476399.1| Oryza sativa (japonica cultivar-group), mRNA Length = 859 Score = 163 bits (82), Expect = 6e-37 Identities = 159/185 (85%) Strand = Plus / Minus Query: 227 tgctttctcctgtcgtacgagaccttggccttctccttcctcttttcctccagctccctg 286 ||||| ||||| ||||| | ||||| ||||||||||| ||||| ||||||| |||||| Sbjct: 617 tgcttcctcctctcgtatgcaaccttagccttctcctttctcttctcctccaattccctg 558 Query: 287 atggtgtcggngtagttccatccgacctccttggagagctggcccaggaggcagtacctg 346 ||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||| || Sbjct: 557 atggtgtcgtggtagttccagccgacctccttggagagctggccgaggaggcagtacttg 498 Query: 347 tgcccaggctgcagcctcagaaccttgagcgcgtcgggaatgaccatgcgcttggtcctg 406 || || ||||| || | ||||||||||| |||||||| | ||||||||||||||| | | Sbjct: 497 tggccgggctggaggcgaagaaccttgagggcgtcggggacgaccatgcgcttggtgcgg 438 Query: 407 tcgta 411 ||||| Sbjct: 437 tcgta 433
>ref|XM_506141.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1567_G09.119 mRNA Length = 863 Score = 163 bits (82), Expect = 6e-37 Identities = 159/185 (85%) Strand = Plus / Minus Query: 227 tgctttctcctgtcgtacgagaccttggccttctccttcctcttttcctccagctccctg 286 ||||| ||||| ||||| | ||||| ||||||||||| ||||| ||||||| |||||| Sbjct: 621 tgcttcctcctctcgtatgcaaccttagccttctcctttctcttctcctccaattccctg 562 Query: 287 atggtgtcggngtagttccatccgacctccttggagagctggcccaggaggcagtacctg 346 ||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||| || Sbjct: 561 atggtgtcgtggtagttccagccgacctccttggagagctggccgaggaggcagtacttg 502 Query: 347 tgcccaggctgcagcctcagaaccttgagcgcgtcgggaatgaccatgcgcttggtcctg 406 || || ||||| || | ||||||||||| |||||||| | ||||||||||||||| | | Sbjct: 501 tggccgggctggaggcgaagaaccttgagggcgtcggggacgaccatgcgcttggtgcgg 442 Query: 407 tcgta 411 ||||| Sbjct: 441 tcgta 437
>dbj|AK103048.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033117G12, full insert sequence Length = 859 Score = 163 bits (82), Expect = 6e-37 Identities = 159/185 (85%) Strand = Plus / Minus Query: 227 tgctttctcctgtcgtacgagaccttggccttctccttcctcttttcctccagctccctg 286 ||||| ||||| ||||| | ||||| ||||||||||| ||||| ||||||| |||||| Sbjct: 617 tgcttcctcctctcgtatgcaaccttagccttctcctttctcttctcctccaattccctg 558 Query: 287 atggtgtcggngtagttccatccgacctccttggagagctggcccaggaggcagtacctg 346 ||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||| || Sbjct: 557 atggtgtcgtggtagttccagccgacctccttggagagctggccgaggaggcagtacttg 498 Query: 347 tgcccaggctgcagcctcagaaccttgagcgcgtcgggaatgaccatgcgcttggtcctg 406 || || ||||| || | ||||||||||| |||||||| | ||||||||||||||| | | Sbjct: 497 tggccgggctggaggcgaagaaccttgagggcgtcggggacgaccatgcgcttggtgcgg 438 Query: 407 tcgta 411 ||||| Sbjct: 437 tcgta 433
>dbj|AK063806.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-121-G03, full insert sequence Length = 863 Score = 163 bits (82), Expect = 6e-37 Identities = 159/185 (85%) Strand = Plus / Minus Query: 227 tgctttctcctgtcgtacgagaccttggccttctccttcctcttttcctccagctccctg 286 ||||| ||||| ||||| | ||||| ||||||||||| ||||| ||||||| |||||| Sbjct: 621 tgcttcctcctctcgtatgcaaccttagccttctcctttctcttctcctccaattccctg 562 Query: 287 atggtgtcggngtagttccatccgacctccttggagagctggcccaggaggcagtacctg 346 ||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||| || Sbjct: 561 atggtgtcgtggtagttccagccgacctccttggagagctggccgaggaggcagtacttg 502 Query: 347 tgcccaggctgcagcctcagaaccttgagcgcgtcgggaatgaccatgcgcttggtcctg 406 || || ||||| || | ||||||||||| |||||||| | ||||||||||||||| | | Sbjct: 501 tggccgggctggaggcgaagaaccttgagggcgtcggggacgaccatgcgcttggtgcgg 442 Query: 407 tcgta 411 ||||| Sbjct: 441 tcgta 437
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 141 bits (71), Expect = 2e-30 Identities = 125/143 (87%) Strand = Plus / Minus Query: 141 agtatttgatcggggccaggctctccagctgagttcccaacttctcctcggctgccttct 200 ||||||||||||| || || |||||||||||| |||| |||||||||||||||||||| Sbjct: 30901123 agtatttgatcggagcaagaatctccagctgaggacccagcttctcctcggctgccttct 30901064 Query: 201 cggccttgacgcggagcttcgccagctgctttctcctgtcgtacgagaccttggccttct 260 | |||||||| || ||||||||||| ||||| |||||||| || | ||||||||||||| Sbjct: 30901063 cagccttgacacgcagcttcgccagttgcttcctcctgtcataggcaaccttggccttct 30901004 Query: 261 ccttcctcttttcctccagctcc 283 |||||||||| ||||| |||||| Sbjct: 30901003 ccttcctcttctcctcaagctcc 30900981 Score = 123 bits (62), Expect = 5e-25 Identities = 82/89 (92%) Strand = Plus / Minus Query: 282 ccctgatggtgtcggngtagttccatccgacctccttggagagctggcccaggaggcagt 341 ||||||||||||| ||||||||| || |||||||||||||||||||| |||||||||| Sbjct: 30900146 ccctgatggtgtcatagtagttccagccaacctccttggagagctggccgaggaggcagt 30900087 Query: 342 acctgtgcccaggctgcagcctcagaacc 370 || |||||||||||||||||||||||||| Sbjct: 30900086 acttgtgcccaggctgcagcctcagaacc 30900058 Score = 123 bits (62), Expect = 5e-25 Identities = 82/89 (92%) Strand = Plus / Plus Query: 282 ccctgatggtgtcggngtagttccatccgacctccttggagagctggcccaggaggcagt 341 ||||||||||||| ||||||||| || |||||||||||||||||||| |||||||||| Sbjct: 30886136 ccctgatggtgtcatagtagttccagccaacctccttggagagctggccgaggaggcagt 30886195 Query: 342 acctgtgcccaggctgcagcctcagaacc 370 || |||||||||||||||||||||||||| Sbjct: 30886196 acttgtgcccaggctgcagcctcagaacc 30886224 Score = 77.8 bits (39), Expect = 3e-11 Identities = 42/43 (97%) Strand = Plus / Minus Query: 370 cttgagcgcgtcgggaatgaccatgcgcttggtcctgtcgtac 412 ||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 30899966 cttgagcgcgtcggggatgaccatgcgcttggtcctgtcgtac 30899924 Score = 77.8 bits (39), Expect = 3e-11 Identities = 42/43 (97%) Strand = Plus / Plus Query: 370 cttgagcgcgtcgggaatgaccatgcgcttggtcctgtcgtac 412 ||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 30886326 cttgagcgcgtcggggatgaccatgcgcttggtcctgtcgtac 30886368
>gb|AC120509.3| Oryza sativa chromosome 3 BAC OSJNBb0081K01 genomic sequence, complete sequence Length = 122496 Score = 141 bits (71), Expect = 2e-30 Identities = 125/143 (87%) Strand = Plus / Plus Query: 141 agtatttgatcggggccaggctctccagctgagttcccaacttctcctcggctgccttct 200 ||||||||||||| || || |||||||||||| |||| |||||||||||||||||||| Sbjct: 41967 agtatttgatcggagcaagaatctccagctgaggacccagcttctcctcggctgccttct 42026 Query: 201 cggccttgacgcggagcttcgccagctgctttctcctgtcgtacgagaccttggccttct 260 | |||||||| || ||||||||||| ||||| |||||||| || | ||||||||||||| Sbjct: 42027 cagccttgacacgcagcttcgccagttgcttcctcctgtcataggcaaccttggccttct 42086 Query: 261 ccttcctcttttcctccagctcc 283 |||||||||| ||||| |||||| Sbjct: 42087 ccttcctcttctcctcaagctcc 42109 Score = 123 bits (62), Expect = 5e-25 Identities = 82/89 (92%) Strand = Plus / Minus Query: 282 ccctgatggtgtcggngtagttccatccgacctccttggagagctggcccaggaggcagt 341 ||||||||||||| ||||||||| || |||||||||||||||||||| |||||||||| Sbjct: 56954 ccctgatggtgtcatagtagttccagccaacctccttggagagctggccgaggaggcagt 56895 Query: 342 acctgtgcccaggctgcagcctcagaacc 370 || |||||||||||||||||||||||||| Sbjct: 56894 acttgtgcccaggctgcagcctcagaacc 56866 Score = 123 bits (62), Expect = 5e-25 Identities = 82/89 (92%) Strand = Plus / Plus Query: 282 ccctgatggtgtcggngtagttccatccgacctccttggagagctggcccaggaggcagt 341 ||||||||||||| ||||||||| || |||||||||||||||||||| |||||||||| Sbjct: 42944 ccctgatggtgtcatagtagttccagccaacctccttggagagctggccgaggaggcagt 43003 Query: 342 acctgtgcccaggctgcagcctcagaacc 370 || |||||||||||||||||||||||||| Sbjct: 43004 acttgtgcccaggctgcagcctcagaacc 43032 Score = 77.8 bits (39), Expect = 3e-11 Identities = 42/43 (97%) Strand = Plus / Minus Query: 370 cttgagcgcgtcgggaatgaccatgcgcttggtcctgtcgtac 412 ||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 56764 cttgagcgcgtcggggatgaccatgcgcttggtcctgtcgtac 56722 Score = 77.8 bits (39), Expect = 3e-11 Identities = 42/43 (97%) Strand = Plus / Plus Query: 370 cttgagcgcgtcgggaatgaccatgcgcttggtcctgtcgtac 412 ||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 43124 cttgagcgcgtcggggatgaccatgcgcttggtcctgtcgtac 43166
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 141 bits (71), Expect = 2e-30 Identities = 125/143 (87%) Strand = Plus / Minus Query: 141 agtatttgatcggggccaggctctccagctgagttcccaacttctcctcggctgccttct 200 ||||||||||||| || || |||||||||||| |||| |||||||||||||||||||| Sbjct: 30991646 agtatttgatcggagcaagaatctccagctgaggacccagcttctcctcggctgccttct 30991587 Query: 201 cggccttgacgcggagcttcgccagctgctttctcctgtcgtacgagaccttggccttct 260 | |||||||| || ||||||||||| ||||| |||||||| || | ||||||||||||| Sbjct: 30991586 cagccttgacacgcagcttcgccagttgcttcctcctgtcataggcaaccttggccttct 30991527 Query: 261 ccttcctcttttcctccagctcc 283 |||||||||| ||||| |||||| Sbjct: 30991526 ccttcctcttctcctcaagctcc 30991504 Score = 123 bits (62), Expect = 5e-25 Identities = 82/89 (92%) Strand = Plus / Minus Query: 282 ccctgatggtgtcggngtagttccatccgacctccttggagagctggcccaggaggcagt 341 ||||||||||||| ||||||||| || |||||||||||||||||||| |||||||||| Sbjct: 30990669 ccctgatggtgtcatagtagttccagccaacctccttggagagctggccgaggaggcagt 30990610 Query: 342 acctgtgcccaggctgcagcctcagaacc 370 || |||||||||||||||||||||||||| Sbjct: 30990609 acttgtgcccaggctgcagcctcagaacc 30990581 Score = 123 bits (62), Expect = 5e-25 Identities = 82/89 (92%) Strand = Plus / Plus Query: 282 ccctgatggtgtcggngtagttccatccgacctccttggagagctggcccaggaggcagt 341 ||||||||||||| ||||||||| || |||||||||||||||||||| |||||||||| Sbjct: 30976659 ccctgatggtgtcatagtagttccagccaacctccttggagagctggccgaggaggcagt 30976718 Query: 342 acctgtgcccaggctgcagcctcagaacc 370 || |||||||||||||||||||||||||| Sbjct: 30976719 acttgtgcccaggctgcagcctcagaacc 30976747 Score = 77.8 bits (39), Expect = 3e-11 Identities = 42/43 (97%) Strand = Plus / Minus Query: 370 cttgagcgcgtcgggaatgaccatgcgcttggtcctgtcgtac 412 ||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 30990489 cttgagcgcgtcggggatgaccatgcgcttggtcctgtcgtac 30990447 Score = 77.8 bits (39), Expect = 3e-11 Identities = 42/43 (97%) Strand = Plus / Plus Query: 370 cttgagcgcgtcgggaatgaccatgcgcttggtcctgtcgtac 412 ||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 30976849 cttgagcgcgtcggggatgaccatgcgcttggtcctgtcgtac 30976891
>gb|AY109365.1| Zea mays CL4861_1 mRNA sequence Length = 1506 Score = 137 bits (69), Expect = 3e-29 Identities = 116/132 (87%) Strand = Plus / Minus Query: 281 tccctgatggtgtcggngtagttccatccgacctccttggagagctggcccaggaggcag 340 |||||||||||||| ||||||||| ||||||||||| ||||||| ||| ||||||||| Sbjct: 1026 tccctgatggtgtcatggtagttccacccgacctccttagagagctcgccgaggaggcag 967 Query: 341 tacctgtgcccaggctgcagcctcagaaccttgagcgcgtcgggaatgaccatgcgcttg 400 ||| |||| |||||||| |||||||||||||| || ||||| || |||||||| |||||| Sbjct: 966 tacttgtgtccaggctgtagcctcagaaccttaagagcgtcagggatgaccatacgcttg 907 Query: 401 gtcctgtcgtac 412 ||| |||||||| Sbjct: 906 gtcttgtcgtac 895 Score = 79.8 bits (40), Expect = 6e-12 Identities = 73/84 (86%) Strand = Plus / Minus Query: 141 agtatttgatcggggccaggctctccagctgagttcccaacttctcctcggctgccttct 200 |||| ||||| ||||| || |||||| ||||| ||||||||||||||||||||||||| Sbjct: 1166 agtacttgataggggcaagaatctccaactgagaccccaacttctcctcggctgccttct 1107 Query: 201 cggccttgacgcggagcttcgcca 224 |||||||||| || ||||| |||| Sbjct: 1106 cggccttgacacgcagcttggcca 1083
>gb|AF503433.1| Sorghum bicolor BAC 170F8, complete sequence Length = 142376 Score = 133 bits (67), Expect = 5e-28 Identities = 124/143 (86%) Strand = Plus / Minus Query: 141 agtatttgatcggggccaggctctccagctgagttcccaacttctcctcggctgccttct 200 |||||||||||||||| || |||||||||||| ||||| |||||||||||||| ||||| Sbjct: 70475 agtatttgatcggggcaagaatctccagctgagatcccagcttctcctcggctgtcttct 70416 Query: 201 cggccttgacgcggagcttcgccagctgctttctcctgtcgtacgagaccttggccttct 260 | |||||||| || ||||| ||||| ||||| ||||| || || | ||||||||||||| Sbjct: 70415 cagccttgacacgcagcttggccagttgcttcctcctctcataggcaaccttggccttct 70356 Query: 261 ccttcctcttttcctccagctcc 283 |||||||||| ||||| |||||| Sbjct: 70355 ccttcctcttctcctcaagctcc 70333 Score = 123 bits (62), Expect = 5e-25 Identities = 82/89 (92%) Strand = Plus / Minus Query: 282 ccctgatggtgtcggngtagttccatccgacctccttggagagctggcccaggaggcagt 341 ||||||||||||| ||||||||||||||||||||| ||||||| ||| |||||||||| Sbjct: 69554 ccctgatggtgtcatggtagttccatccgacctccttagagagctcgccgaggaggcagt 69495 Query: 342 acctgtgcccaggctgcagcctcagaacc 370 || |||||||||||||||||||||||||| Sbjct: 69494 acttgtgcccaggctgcagcctcagaacc 69466
>gb|AY013245.2| Oryza sativa (japonica cultivar-group) chromosome 3 BAC 36I5, partial sequence Length = 65547 Score = 123 bits (62), Expect = 5e-25 Identities = 82/89 (92%) Strand = Plus / Minus Query: 282 ccctgatggtgtcggngtagttccatccgacctccttggagagctggcccaggaggcagt 341 ||||||||||||| ||||||||| || |||||||||||||||||||| |||||||||| Sbjct: 54980 ccctgatggtgtcatagtagttccagccaacctccttggagagctggccgaggaggcagt 54921 Query: 342 acctgtgcccaggctgcagcctcagaacc 370 || |||||||||||||||||||||||||| Sbjct: 54920 acttgtgcccaggctgcagcctcagaacc 54892 Score = 77.8 bits (39), Expect = 3e-11 Identities = 42/43 (97%) Strand = Plus / Minus Query: 370 cttgagcgcgtcgggaatgaccatgcgcttggtcctgtcgtac 412 ||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 54790 cttgagcgcgtcggggatgaccatgcgcttggtcctgtcgtac 54748
>gb|AC146913.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0013C12 map near S6115, complete sequence Length = 123718 Score = 113 bits (57), Expect = 5e-22 Identities = 69/73 (94%) Strand = Plus / Minus Query: 298 gtagttccatccgacctccttggagagctggcccaggaggcagtacctgtgcccaggctg 357 ||||||||| || |||||||||||||||||||| |||||||||||| ||||||||||||| Sbjct: 110430 gtagttccagccaacctccttggagagctggccgaggaggcagtacttgtgcccaggctg 110371 Query: 358 cagcctcagaacc 370 ||||||||||||| Sbjct: 110370 cagcctcagaacc 110358 Score = 77.8 bits (39), Expect = 3e-11 Identities = 42/43 (97%) Strand = Plus / Minus Query: 370 cttgagcgcgtcgggaatgaccatgcgcttggtcctgtcgtac 412 ||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 110257 cttgagcgcgtcggggatgaccatgcgcttggtcctgtcgtac 110215
>gb|AC145327.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0095J10 map near S6115, complete sequence Length = 123717 Score = 113 bits (57), Expect = 5e-22 Identities = 69/73 (94%) Strand = Plus / Minus Query: 298 gtagttccatccgacctccttggagagctggcccaggaggcagtacctgtgcccaggctg 357 ||||||||| || |||||||||||||||||||| |||||||||||| ||||||||||||| Sbjct: 15019 gtagttccagccaacctccttggagagctggccgaggaggcagtacttgtgcccaggctg 14960 Query: 358 cagcctcagaacc 370 ||||||||||||| Sbjct: 14959 cagcctcagaacc 14947 Score = 77.8 bits (39), Expect = 3e-11 Identities = 42/43 (97%) Strand = Plus / Minus Query: 370 cttgagcgcgtcgggaatgaccatgcgcttggtcctgtcgtac 412 ||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 14846 cttgagcgcgtcggggatgaccatgcgcttggtcctgtcgtac 14804
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 113 bits (57), Expect = 5e-22 Identities = 69/73 (94%) Strand = Plus / Minus Query: 298 gtagttccatccgacctccttggagagctggcccaggaggcagtacctgtgcccaggctg 357 ||||||||| || |||||||||||||||||||| |||||||||||| ||||||||||||| Sbjct: 12943094 gtagttccagccaacctccttggagagctggccgaggaggcagtacttgtgcccaggctg 12943035 Query: 358 cagcctcagaacc 370 ||||||||||||| Sbjct: 12943034 cagcctcagaacc 12943022 Score = 77.8 bits (39), Expect = 3e-11 Identities = 42/43 (97%) Strand = Plus / Minus Query: 370 cttgagcgcgtcgggaatgaccatgcgcttggtcctgtcgtac 412 ||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 12942921 cttgagcgcgtcggggatgaccatgcgcttggtcctgtcgtac 12942879
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 113 bits (57), Expect = 5e-22 Identities = 69/73 (94%) Strand = Plus / Minus Query: 298 gtagttccatccgacctccttggagagctggcccaggaggcagtacctgtgcccaggctg 357 ||||||||| || |||||||||||||||||||| |||||||||||| ||||||||||||| Sbjct: 13023301 gtagttccagccaacctccttggagagctggccgaggaggcagtacttgtgcccaggctg 13023242 Query: 358 cagcctcagaacc 370 ||||||||||||| Sbjct: 13023241 cagcctcagaacc 13023229 Score = 77.8 bits (39), Expect = 3e-11 Identities = 42/43 (97%) Strand = Plus / Minus Query: 370 cttgagcgcgtcgggaatgaccatgcgcttggtcctgtcgtac 412 ||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 13023128 cttgagcgcgtcggggatgaccatgcgcttggtcctgtcgtac 13023086
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 97.6 bits (49), Expect = 3e-17 Identities = 69/76 (90%) Strand = Plus / Plus Query: 282 ccctgatggtgtcggngtagttccatccgacctccttggagagctggcccaggaggcagt 341 |||||||||||||| ||||||||| ||||||||||||||||||||||| |||||||||| Sbjct: 524124 ccctgatggtgtcgtggtagttccagccgacctccttggagagctggccgaggaggcagt 524183 Query: 342 acctgtgcccaggctg 357 || |||| || ||||| Sbjct: 524184 acttgtggccgggctg 524199 Score = 44.1 bits (22), Expect = 0.35 Identities = 37/42 (88%) Strand = Plus / Plus Query: 370 cttgagcgcgtcgggaatgaccatgcgcttggtcctgtcgta 411 |||||| |||||||| | ||||||||||||||| | |||||| Sbjct: 524288 cttgagggcgtcggggacgaccatgcgcttggtgcggtcgta 524329 Score = 40.1 bits (20), Expect = 5.5 Identities = 44/52 (84%) Strand = Plus / Plus Query: 227 tgctttctcctgtcgtacgagaccttggccttctccttcctcttttcctcca 278 ||||| ||||| ||||| | ||||| ||||||||||| ||||| ||||||| Sbjct: 523008 tgcttcctcctctcgtatgcaaccttagccttctcctttctcttctcctcca 523059
>dbj|AP004342.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0585H11 Length = 149371 Score = 97.6 bits (49), Expect = 3e-17 Identities = 69/76 (90%) Strand = Plus / Plus Query: 282 ccctgatggtgtcggngtagttccatccgacctccttggagagctggcccaggaggcagt 341 |||||||||||||| ||||||||| ||||||||||||||||||||||| |||||||||| Sbjct: 126288 ccctgatggtgtcgtggtagttccagccgacctccttggagagctggccgaggaggcagt 126347 Query: 342 acctgtgcccaggctg 357 || |||| || ||||| Sbjct: 126348 acttgtggccgggctg 126363 Score = 44.1 bits (22), Expect = 0.35 Identities = 37/42 (88%) Strand = Plus / Plus Query: 370 cttgagcgcgtcgggaatgaccatgcgcttggtcctgtcgta 411 |||||| |||||||| | ||||||||||||||| | |||||| Sbjct: 126452 cttgagggcgtcggggacgaccatgcgcttggtgcggtcgta 126493 Score = 40.1 bits (20), Expect = 5.5 Identities = 44/52 (84%) Strand = Plus / Plus Query: 227 tgctttctcctgtcgtacgagaccttggccttctccttcctcttttcctcca 278 ||||| ||||| ||||| | ||||| ||||||||||| ||||| ||||||| Sbjct: 125172 tgcttcctcctctcgtatgcaaccttagccttctcctttctcttctcctcca 125223
>dbj|AP003759.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1567_G09 Length = 121388 Score = 97.6 bits (49), Expect = 3e-17 Identities = 69/76 (90%) Strand = Plus / Plus Query: 282 ccctgatggtgtcggngtagttccatccgacctccttggagagctggcccaggaggcagt 341 |||||||||||||| ||||||||| ||||||||||||||||||||||| |||||||||| Sbjct: 78036 ccctgatggtgtcgtggtagttccagccgacctccttggagagctggccgaggaggcagt 78095 Query: 342 acctgtgcccaggctg 357 || |||| || ||||| Sbjct: 78096 acttgtggccgggctg 78111 Score = 44.1 bits (22), Expect = 0.35 Identities = 37/42 (88%) Strand = Plus / Plus Query: 370 cttgagcgcgtcgggaatgaccatgcgcttggtcctgtcgta 411 |||||| |||||||| | ||||||||||||||| | |||||| Sbjct: 78200 cttgagggcgtcggggacgaccatgcgcttggtgcggtcgta 78241 Score = 40.1 bits (20), Expect = 5.5 Identities = 44/52 (84%) Strand = Plus / Plus Query: 227 tgctttctcctgtcgtacgagaccttggccttctccttcctcttttcctcca 278 ||||| ||||| ||||| | ||||| ||||||||||| ||||| ||||||| Sbjct: 76920 tgcttcctcctctcgtatgcaaccttagccttctcctttctcttctcctcca 76971
>gb|AY498745.1| Capsicum annuum 60S ribosomal protein L13a (RpL13a) mRNA, complete cds Length = 797 Score = 63.9 bits (32), Expect = 4e-07 Identities = 110/135 (81%), Gaps = 1/135 (0%) Strand = Plus / Minus Query: 181 cttctcctcggctgccttctcggccttgacgcggagcttcgccagctgctttctcctgtc 240 |||||||||||| ||||| || ||||| || | ||| || ||||||||||||||||| || Sbjct: 644 cttctcctcggcagcctt-tcagccttaaccctgagtttggccagctgctttctcctctc 586 Query: 241 gtacgagaccttggccttctccttcctcttttcctccagctccctgatggtgtcggngta 300 || | ||||| ||| ||||||| ||||| ||||| |||||| |||| |||||| | Sbjct: 585 ataagtgacctgggctctctcctttctcttgtcctcgagctccttgatagtgtcgtaatg 526 Query: 301 gttccatccgacctc 315 ||||||||| ||||| Sbjct: 525 gttccatccaacctc 511
>gb|DQ200397.1| Solanum tuberosum clone 070F10 60S ribosomal protein L13a-like protein mRNA, complete cds Length = 848 Score = 60.0 bits (30), Expect = 6e-06 Identities = 93/114 (81%) Strand = Plus / Minus Query: 181 cttctcctcggctgccttctcggccttgacgcggagcttcgccagctgctttctcctgtc 240 ||||||||| || |||||||||||||| || | ||| || |||| |||||||||||| || Sbjct: 618 cttctcctcagcagccttctcggccttaaccctgagtttggccaactgctttctcctctc 559 Query: 241 gtacgagaccttggccttctccttcctcttttcctccagctccctgatggtgtc 294 ||| | |||| ||| ||||||| ||||| | ||| |||||| |||| ||||| Sbjct: 558 gtatgctacctgggctctctcctttctcttgttctcaagctccttgatagtgtc 505
>gb|DQ099054.1| Arachis stenosperma clone AS1RN3B12 microsatellite sequence Length = 758 Score = 54.0 bits (27), Expect = 4e-04 Identities = 53/62 (85%) Strand = Plus / Plus Query: 254 gccttctccttcctcttttcctccagctccctgatggtgtcggngtagttccatccgacc 313 ||||||||||| ||||| | ||||||||| ||||||| ||| |||||||||||| ||| Sbjct: 169 gccttctcctttctcttcttctccagctcagtgatggtatcgtagtagttccatccaacc 228 Query: 314 tc 315 || Sbjct: 229 tc 230
>ref|NM_124253.2| Arabidopsis thaliana structural constituent of ribosome AT5G48760 mRNA, complete cds Length = 834 Score = 52.0 bits (26), Expect = 0.001 Identities = 35/38 (92%) Strand = Plus / Minus Query: 258 tctccttcctcttttcctccagctccctgatggtgtcg 295 |||||||||||||| |||||||||| ||||||||||| Sbjct: 538 tctccttcctctttgtctccagctccttgatggtgtcg 501
>ref|XM_509965.1| PREDICTED: Pan troglodytes similar to ribosomal protein L13a; 60S ribosomal protein L13a; 23 kD highly basic protein (LOC452925), mRNA Length = 581 Score = 52.0 bits (26), Expect = 0.001 Identities = 29/30 (96%) Strand = Plus / Minus Query: 250 cttggccttctccttcctcttttcctccag 279 ||||||||||||||||||||| |||||||| Sbjct: 416 cttggccttctccttcctcttctcctccag 387
>ref|XM_526928.1| PREDICTED: Pan troglodytes integrin alpha 2 (LOC471550), mRNA Length = 3000 Score = 52.0 bits (26), Expect = 0.001 Identities = 29/30 (96%) Strand = Plus / Minus Query: 250 cttggccttctccttcctcttttcctccag 279 ||||||||||||||||||||| |||||||| Sbjct: 2883 cttggccttctccttcctcttctcctccag 2854
>ref|XM_514152.1| PREDICTED: Pan troglodytes similar to ribosomal protein L13a; 60S ribosomal protein L13a; 23 kD highly basic protein (LOC457684), mRNA Length = 663 Score = 52.0 bits (26), Expect = 0.001 Identities = 29/30 (96%) Strand = Plus / Minus Query: 250 cttggccttctccttcctcttttcctccag 279 ||||||||||||||||||||| |||||||| Sbjct: 495 cttggccttctccttcctcttctcctccag 466
>gb|AC125807.9| Homo sapiens 12 BAC RP11-253E3 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 131995 Score = 52.0 bits (26), Expect = 0.001 Identities = 29/30 (96%) Strand = Plus / Plus Query: 250 cttggccttctccttcctcttttcctccag 279 ||||||||||||||||||||| |||||||| Sbjct: 81648 cttggccttctccttcctcttctcctccag 81677
>gb|AY090359.1| Arabidopsis thaliana AT5g48760/K24G6_9 mRNA, complete cds Length = 677 Score = 52.0 bits (26), Expect = 0.001 Identities = 35/38 (92%) Strand = Plus / Minus Query: 258 tctccttcctcttttcctccagctccctgatggtgtcg 295 |||||||||||||| |||||||||| ||||||||||| Sbjct: 531 tctccttcctctttgtctccagctccttgatggtgtcg 494
>gb|AC020750.4| Homo sapiens chromosome 3 clone RP11-105H19 map 3p, complete sequence Length = 156933 Score = 52.0 bits (26), Expect = 0.001 Identities = 29/30 (96%) Strand = Plus / Minus Query: 250 cttggccttctccttcctcttttcctccag 279 ||||||||||||||||||||| |||||||| Sbjct: 95042 cttggccttctccttcctcttctcctccag 95013
>gb|AY088191.1| Arabidopsis thaliana clone 4275 mRNA, complete sequence Length = 814 Score = 52.0 bits (26), Expect = 0.001 Identities = 35/38 (92%) Strand = Plus / Minus Query: 258 tctccttcctcttttcctccagctccctgatggtgtcg 295 |||||||||||||| |||||||||| ||||||||||| Sbjct: 531 tctccttcctctttgtctccagctccttgatggtgtcg 494
>gb|AY122902.1| Arabidopsis thaliana At5g48760/K24G6_9 mRNA, complete cds Length = 621 Score = 52.0 bits (26), Expect = 0.001 Identities = 35/38 (92%) Strand = Plus / Minus Query: 258 tctccttcctcttttcctccagctccctgatggtgtcg 295 |||||||||||||| |||||||||| ||||||||||| Sbjct: 502 tctccttcctctttgtctccagctccttgatggtgtcg 465
>gb|AC083855.3| Homo sapiens chromosome 3 clone RP11-622I12 map 3p, complete sequence Length = 190861 Score = 52.0 bits (26), Expect = 0.001 Identities = 29/30 (96%) Strand = Plus / Plus Query: 250 cttggccttctccttcctcttttcctccag 279 ||||||||||||||||||||| |||||||| Sbjct: 188727 cttggccttctccttcctcttctcctccag 188756
>gb|AC003072.1|AC003072 Human BAC clone CTA-963H5 from 22q12.1-qter, complete sequence Length = 39401 Score = 52.0 bits (26), Expect = 0.001 Identities = 29/30 (96%) Strand = Plus / Plus Query: 250 cttggccttctccttcctcttttcctccag 279 ||||||||||||||||||||| |||||||| Sbjct: 2080 cttggccttctccttcctcttctcctccag 2109
>dbj|AB049716.1| Pisum sativum ssa-6 mRNA for putative senescence-associated protein, complete cds Length = 918 Score = 52.0 bits (26), Expect = 0.001 Identities = 49/57 (85%) Strand = Plus / Minus Query: 259 ctccttcctcttttcctccagctccctgatggtgtcggngtagttccatccgacctc 315 |||||||||||| | ||||| |||| ||||||||||| ||| |||||||| ||||| Sbjct: 494 ctccttcctcttcttctccaactccttgatggtgtcgtagtaattccatcccacctc 438
>gb|U18488.1|STU18488 Salmo trutta transplantation antigen mRNA, partial cds Length = 621 Score = 50.1 bits (25), Expect = 0.006 Identities = 28/29 (96%) Strand = Plus / Minus Query: 250 cttggccttctccttcctcttttcctcca 278 ||||||||||||||||||||| ||||||| Sbjct: 455 cttggccttctccttcctcttctcctcca 427
>gb|AC156572.3| Mus musculus BAC clone RP23-216C6 from chromosome 13, complete sequence Length = 208578 Score = 46.1 bits (23), Expect = 0.090 Identities = 23/23 (100%) Strand = Plus / Minus Query: 255 ccttctccttcctcttttcctcc 277 ||||||||||||||||||||||| Sbjct: 164552 ccttctccttcctcttttcctcc 164530
>gb|AC068898.8| Homo sapiens chromosome 10 clone RP11-534L6, complete sequence Length = 176188 Score = 46.1 bits (23), Expect = 0.090 Identities = 26/27 (96%) Strand = Plus / Plus Query: 253 ggccttctccttcctcttttcctccag 279 |||||||||||||||||| |||||||| Sbjct: 137634 ggccttctccttcctcttctcctccag 137660
>gb|AC035139.11| Homo sapiens chromosome 10 clone RP11-563N6, complete sequence Length = 210472 Score = 46.1 bits (23), Expect = 0.090 Identities = 26/27 (96%) Strand = Plus / Plus Query: 253 ggccttctccttcctcttttcctccag 279 |||||||||||||||||| |||||||| Sbjct: 1517 ggccttctccttcctcttctcctccag 1543
>gb|AC022533.10| Homo sapiens chromosome 10 clone RP11-230D19, complete sequence Length = 174569 Score = 46.1 bits (23), Expect = 0.090 Identities = 26/27 (96%) Strand = Plus / Minus Query: 253 ggccttctccttcctcttttcctccag 279 |||||||||||||||||| |||||||| Sbjct: 136041 ggccttctccttcctcttctcctccag 136015
>gb|AC012346.9|AC012346 Homo sapiens chromosome , clone RP11-15N22, complete sequence Length = 164470 Score = 46.1 bits (23), Expect = 0.090 Identities = 26/27 (96%) Strand = Plus / Plus Query: 341 tacctgtgcccaggctgcagcctcaga 367 |||||||||||||||||||| |||||| Sbjct: 12064 tacctgtgcccaggctgcagtctcaga 12090
>gb|AC025519.10|AC025519 Homo sapiens, clone RP11-484J3, complete sequence Length = 171464 Score = 46.1 bits (23), Expect = 0.090 Identities = 26/27 (96%) Strand = Plus / Minus Query: 341 tacctgtgcccaggctgcagcctcaga 367 |||||||||||||||||||| |||||| Sbjct: 14412 tacctgtgcccaggctgcagtctcaga 14386
>gb|AC161811.6| Mus musculus chromosome 5, clone RP23-456E9, complete sequence Length = 163565 Score = 46.1 bits (23), Expect = 0.090 Identities = 23/23 (100%) Strand = Plus / Minus Query: 255 ccttctccttcctcttttcctcc 277 ||||||||||||||||||||||| Sbjct: 6106 ccttctccttcctcttttcctcc 6084
>emb|CT030185.11| Mouse DNA sequence from clone RP23-204L16 on chromosome 13, complete sequence Length = 116416 Score = 46.1 bits (23), Expect = 0.090 Identities = 23/23 (100%) Strand = Plus / Plus Query: 255 ccttctccttcctcttttcctcc 277 ||||||||||||||||||||||| Sbjct: 67988 ccttctccttcctcttttcctcc 68010
>gb|AC138365.16| Mus musculus chromosome 5, clone RP23-262B5, complete sequence Length = 172631 Score = 46.1 bits (23), Expect = 0.090 Identities = 23/23 (100%) Strand = Plus / Plus Query: 255 ccttctccttcctcttttcctcc 277 ||||||||||||||||||||||| Sbjct: 122336 ccttctccttcctcttttcctcc 122358
>ref|NM_111591.2| Arabidopsis thaliana structural constituent of ribosome AT3G07110 transcript variant AT3G07110.1 mRNA, complete cds Length = 881 Score = 44.1 bits (22), Expect = 0.35 Identities = 45/53 (84%) Strand = Plus / Minus Query: 260 tccttcctcttttcctccagctccctgatggtgtcggngtagttccatccgac 312 ||||| ||||| | |||||||||| ||||||||||| || |||||| ||||| Sbjct: 564 tcctttctcttgttctccagctccttgatggtgtcgtagtggttccacccgac 512
>ref|XM_520729.1| PREDICTED: Pan troglodytes similar to ribosomal protein L13a; 60S ribosomal protein L13a; 23 kD highly basic protein (LOC465277), mRNA Length = 662 Score = 44.1 bits (22), Expect = 0.35 Identities = 28/30 (93%) Strand = Plus / Minus Query: 250 cttggccttctccttcctcttttcctccag 279 |||||| |||||||||||||| |||||||| Sbjct: 514 cttggctttctccttcctcttctcctccag 485
>ref|XM_508935.1| PREDICTED: Pan troglodytes similar to ribosomal protein L13a; 60S ribosomal protein L13a; 23 kD highly basic protein (LOC451757), mRNA Length = 690 Score = 44.1 bits (22), Expect = 0.35 Identities = 28/30 (93%) Strand = Plus / Minus Query: 250 cttggccttctccttcctcttttcctccag 279 ||||||||||||||| ||||| |||||||| Sbjct: 423 cttggccttctcctttctcttctcctccag 394
>gb|DQ216006.1| Taeniopygia guttata clone 0061P0024G09 ribosomal protein L13A-like mRNA, complete sequence Length = 786 Score = 44.1 bits (22), Expect = 0.35 Identities = 28/30 (93%) Strand = Plus / Minus Query: 250 cttggccttctccttcctcttttcctccag 279 ||||||||||||||||| ||| |||||||| Sbjct: 499 cttggccttctccttccgcttctcctccag 470
>gb|DQ216003.1| Taeniopygia guttata clone 0058P0045E08 ribosomal protein L13A-like mRNA, complete sequence Length = 801 Score = 44.1 bits (22), Expect = 0.35 Identities = 28/30 (93%) Strand = Plus / Minus Query: 250 cttggccttctccttcctcttttcctccag 279 ||||||||||||||||| ||| |||||||| Sbjct: 528 cttggccttctccttccgcttctcctccag 499
>gb|DQ216001.1| Taeniopygia guttata clone 0058P0049C02 ribosomal protein L13A-like mRNA, complete sequence Length = 801 Score = 44.1 bits (22), Expect = 0.35 Identities = 28/30 (93%) Strand = Plus / Minus Query: 250 cttggccttctccttcctcttttcctccag 279 ||||||||||||||||| ||| |||||||| Sbjct: 528 cttggccttctccttccgcttctcctccag 499
>ref|XM_526130.1| PREDICTED: Pan troglodytes similar to APG7 autophagy 7-like; ubiquitin activating enzyme E1-like protein (LOC470747), mRNA Length = 2091 Score = 44.1 bits (22), Expect = 0.35 Identities = 28/30 (93%) Strand = Plus / Plus Query: 250 cttggccttctccttcctcttttcctccag 279 |||||||||||| |||||||| |||||||| Sbjct: 169 cttggccttctcattcctcttctcctccag 198
>gb|AC167134.5| Mus musculus chromosome 1, clone RP23-59E7, complete sequence Length = 140039 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Plus Query: 255 ccttctccttcctcttttcctc 276 |||||||||||||||||||||| Sbjct: 36545 ccttctccttcctcttttcctc 36566
>ref|XM_533620.2| PREDICTED: Canis familiaris Ribosomal protein L13a (RPL13A), mRNA Length = 525 Score = 44.1 bits (22), Expect = 0.35 Identities = 28/30 (93%) Strand = Plus / Minus Query: 250 cttggccttctccttcctcttttcctccag 279 ||||||||||| ||||||||| |||||||| Sbjct: 372 cttggccttcttcttcctcttctcctccag 343
>gb|BC043976.1| Xenopus laevis ribosomal protein L13a, mRNA (cDNA clone MGC:54018 IMAGE:5571546), complete cds Length = 819 Score = 44.1 bits (22), Expect = 0.35 Identities = 28/30 (93%) Strand = Plus / Minus Query: 250 cttggccttctccttcctcttttcctccag 279 ||||||||||||||| ||||| |||||||| Sbjct: 584 cttggccttctcctttctcttctcctccag 555
>gb|AC166831.3| Mus musculus BAC clone RP23-270P14 from chromosome 16, complete sequence Length = 230269 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Minus Query: 250 cttggccttctccttcctcttt 271 |||||||||||||||||||||| Sbjct: 45570 cttggccttctccttcctcttt 45549
>emb|AL391822.12| Human DNA sequence from clone RP11-494K3 on chromosome 1 Contains the 3' end of the gene for neurofascin (NFASC) and a ribosomal protein L13a (RPL13A) pseudogene, complete sequence Length = 115292 Score = 44.1 bits (22), Expect = 0.35 Identities = 28/30 (93%) Strand = Plus / Minus Query: 250 cttggccttctccttcctcttttcctccag 279 ||||||||| ||| |||||||||||||||| Sbjct: 35865 cttggccttttccctcctcttttcctccag 35836
>emb|AJ843089.1| Platichthys flesus mRNA for 60S ribosomal protein L13A (rpl13A gene) Length = 686 Score = 44.1 bits (22), Expect = 0.35 Identities = 28/30 (93%) Strand = Plus / Minus Query: 250 cttggccttctccttcctcttttcctccag 279 ||||||||||||||| ||||| |||||||| Sbjct: 522 cttggccttctcctttctcttctcctccag 493
>gb|BC067891.1| Homo sapiens cDNA clone MGC:87657 IMAGE:5271409, complete cds Length = 1488 Score = 44.1 bits (22), Expect = 0.35 Identities = 28/30 (93%) Strand = Plus / Minus Query: 250 cttggccttctccttcctcttttcctccag 279 |||||| |||||||||||||| |||||||| Sbjct: 431 cttggctttctccttcctcttctcctccag 402
>gb|AC092768.6| Homo sapiens chromosome 11, clone RP11-1149L18, complete sequence Length = 146364 Score = 44.1 bits (22), Expect = 0.35 Identities = 28/30 (93%) Strand = Plus / Plus Query: 250 cttggccttctccttcctcttttcctccag 279 |||||| |||||||||||||| |||||||| Sbjct: 2917 cttggctttctccttcctcttctcctccag 2946
>gb|BC103039.1| Bos taurus cDNA clone MGC:128198 IMAGE:7984430, complete cds Length = 679 Score = 44.1 bits (22), Expect = 0.35 Identities = 28/30 (93%) Strand = Plus / Minus Query: 250 cttggccttctccttcctcttttcctccag 279 ||||||||||||||| ||||| |||||||| Sbjct: 518 cttggccttctcctttctcttctcctccag 489
>gb|AY114589.1| Arabidopsis thaliana putative 60S ribosomal protein L13A (At3g07110) mRNA, complete cds Length = 667 Score = 44.1 bits (22), Expect = 0.35 Identities = 45/53 (84%) Strand = Plus / Minus Query: 260 tccttcctcttttcctccagctccctgatggtgtcggngtagttccatccgac 312 ||||| ||||| | |||||||||| ||||||||||| || |||||| ||||| Sbjct: 500 tcctttctcttgttctccagctccttgatggtgtcgtagtggttccacccgac 448
>gb|AC084878.12| Homo sapiens 12q BAC RP11-101K23 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 135060 Score = 44.1 bits (22), Expect = 0.35 Identities = 28/30 (93%) Strand = Plus / Plus Query: 250 cttggccttctccttcctcttttcctccag 279 |||| |||||||||||||||| |||||||| Sbjct: 77781 cttgaccttctccttcctcttctcctccag 77810
>gb|AC098935.2| Homo sapiens chromosome 1 clone RP11-564A8, complete sequence Length = 192565 Score = 44.1 bits (22), Expect = 0.35 Identities = 28/30 (93%) Strand = Plus / Minus Query: 250 cttggccttctccttcctcttttcctccag 279 ||||||||||||||||| ||| |||||||| Sbjct: 60141 cttggccttctccttccacttctcctccag 60112
>gb|AC074250.6| Homo sapiens BAC clone RP11-622A1 from 4, complete sequence Length = 199331 Score = 44.1 bits (22), Expect = 0.35 Identities = 28/30 (93%) Strand = Plus / Minus Query: 250 cttggccttctccttcctcttttcctccag 279 ||||| ||||||||| |||||||||||||| Sbjct: 37403 cttggtcttctcctttctcttttcctccag 37374
>ref|XM_936627.1| PREDICTED: Homo sapiens similar to ribosomal protein L13a (LOC647572), mRNA Length = 1466 Score = 44.1 bits (22), Expect = 0.35 Identities = 28/30 (93%) Strand = Plus / Minus Query: 250 cttggccttctccttcctcttttcctccag 279 |||||| |||||||||||||| |||||||| Sbjct: 430 cttggctttctccttcctcttctcctccag 401
>ref|XM_928691.1| PREDICTED: Homo sapiens similar to ribosomal protein L13a (LOC645683), mRNA Length = 1466 Score = 44.1 bits (22), Expect = 0.35 Identities = 28/30 (93%) Strand = Plus / Minus Query: 250 cttggccttctccttcctcttttcctccag 279 |||||| |||||||||||||| |||||||| Sbjct: 430 cttggctttctccttcctcttctcctccag 401
>gb|AY062793.1| Arabidopsis thaliana putative 60S ribosomal protein L13A (At3g07110; T1B9.24) mRNA, complete cds Length = 811 Score = 44.1 bits (22), Expect = 0.35 Identities = 45/53 (84%) Strand = Plus / Minus Query: 260 tccttcctcttttcctccagctccctgatggtgtcggngtagttccatccgac 312 ||||| ||||| | |||||||||| ||||||||||| || |||||| ||||| Sbjct: 563 tcctttctcttgttctccagctccttgatggtgtcgtagtggttccacccgac 511
>gb|BC105558.1| Bos taurus cDNA clone IMAGE:8120112, with apparent retained intron Length = 2007 Score = 44.1 bits (22), Expect = 0.35 Identities = 28/30 (93%) Strand = Plus / Minus Query: 250 cttggccttctccttcctcttttcctccag 279 ||||||||||||||| ||||| |||||||| Sbjct: 1303 cttggccttctcctttctcttctcctccag 1274
>gb|AY057551.1| Arabidopsis thaliana AT3g07110/T1B9_24 mRNA, complete cds Length = 831 Score = 44.1 bits (22), Expect = 0.35 Identities = 45/53 (84%) Strand = Plus / Minus Query: 260 tccttcctcttttcctccagctccctgatggtgtcggngtagttccatccgac 312 ||||| ||||| | |||||||||| ||||||||||| || |||||| ||||| Sbjct: 563 tcctttctcttgttctccagctccttgatggtgtcgtagtggttccacccgac 511
>gb|AC129776.3| Mus musculus BAC clone RP23-197A15 from chromosome 16, complete sequence Length = 219345 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Minus Query: 250 cttggccttctccttcctcttt 271 |||||||||||||||||||||| Sbjct: 1434 cttggccttctccttcctcttt 1413
>gb|AF325041.2|AF325041 Arabidopsis thaliana AT3g07110 (AT3g07110/T1B9_24) mRNA, complete cds Length = 829 Score = 44.1 bits (22), Expect = 0.35 Identities = 45/53 (84%) Strand = Plus / Minus Query: 260 tccttcctcttttcctccagctccctgatggtgtcggngtagttccatccgac 312 ||||| ||||| | |||||||||| ||||||||||| || |||||| ||||| Sbjct: 563 tcctttctcttgttctccagctccttgatggtgtcgtagtggttccacccgac 511
>ref|NG_002538.1| Homo sapiens ribosomal protein L13a pseudogene 2 (RPL13AP2) on chromosome 14 Length = 773 Score = 44.1 bits (22), Expect = 0.35 Identities = 25/26 (96%) Strand = Plus / Minus Query: 250 cttggccttctccttcctcttttcct 275 ||||||||||||||||||||| |||| Sbjct: 530 cttggccttctccttcctcttctcct 505
>gb|AC018523.9|AC018523 Homo sapiens chromosome , clone RP11-140L24, complete sequence Length = 166507 Score = 44.1 bits (22), Expect = 0.35 Identities = 28/30 (93%) Strand = Plus / Plus Query: 250 cttggccttctccttcctcttttcctccag 279 |||||| |||||||||||||| |||||||| Sbjct: 162299 cttggctttctccttcctcttctcctccag 162328
>emb|BX822336.1|CNS0A5ZO Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB2ZC08 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 788 Score = 44.1 bits (22), Expect = 0.35 Identities = 45/53 (84%) Strand = Plus / Minus Query: 260 tccttcctcttttcctccagctccctgatggtgtcggngtagttccatccgac 312 ||||| ||||| | |||||||||| ||||||||||| || |||||| ||||| Sbjct: 547 tcctttctcttgttctccagctccttgatggtgtcgtagtggttccacccgac 495
>emb|BX824368.1|CNS0A5OL Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH43ZE05 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 800 Score = 44.1 bits (22), Expect = 0.35 Identities = 45/53 (84%) Strand = Plus / Minus Query: 260 tccttcctcttttcctccagctccctgatggtgtcggngtagttccatccgac 312 ||||| ||||| | |||||||||| ||||||||||| || |||||| ||||| Sbjct: 541 tcctttctcttgttctccagctccttgatggtgtcgtagtggttccacccgac 489
>emb|BX822519.1|CNS0A5UA Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB45ZA10 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 781 Score = 44.1 bits (22), Expect = 0.35 Identities = 45/53 (84%) Strand = Plus / Minus Query: 260 tccttcctcttttcctccagctccctgatggtgtcggngtagttccatccgac 312 ||||| ||||| | |||||||||| ||||||||||| || |||||| ||||| Sbjct: 525 tcctttctcttgttctccagctccttgatggtgtcgtagtggttccacccgac 473
>emb|BX822098.1|CNS0A5TD Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB12ZA04 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 660 Score = 44.1 bits (22), Expect = 0.35 Identities = 45/53 (84%) Strand = Plus / Minus Query: 260 tccttcctcttttcctccagctccctgatggtgtcggngtagttccatccgac 312 ||||| ||||| | |||||||||| ||||||||||| || |||||| ||||| Sbjct: 415 tcctttctcttgttctccagctccttgatggtgtcgtagtggttccacccgac 363
>gb|AC107675.13| Mus musculus chromosome 1, clone RP24-471N7, complete sequence Length = 127374 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Minus Query: 255 ccttctccttcctcttttcctc 276 |||||||||||||||||||||| Sbjct: 43714 ccttctccttcctcttttcctc 43693
>emb|AL157792.3|CNS01RG7 Human chromosome 14 DNA sequence BAC R-388M7 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 194760 Score = 44.1 bits (22), Expect = 0.35 Identities = 25/26 (96%) Strand = Plus / Plus Query: 250 cttggccttctccttcctcttttcct 275 ||||||||||||||||||||| |||| Sbjct: 115340 cttggccttctccttcctcttctcct 115365
>emb|AL355773.4|CNS05TCO Human chromosome 14 DNA sequence BAC R-813I20 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 216647 Score = 44.1 bits (22), Expect = 0.35 Identities = 28/30 (93%) Strand = Plus / Plus Query: 250 cttggccttctccttcctcttttcctccag 279 |||||| |||||||||||||| |||||||| Sbjct: 124955 cttggctttctccttcctcttctcctccag 124984
>emb|X56933.1|BTAPAS B.taurus mRNA, alternative polyadenylation signals Length = 1101 Score = 44.1 bits (22), Expect = 0.35 Identities = 28/30 (93%) Strand = Plus / Minus Query: 250 cttggccttctccttcctcttttcctccag 279 ||||||||||||||| ||||| |||||||| Sbjct: 493 cttggccttctcctttctcttctcctccag 464
>gb|AY650304.1| Macaca fascicularis ribosomal protein L13A mRNA, partial cds Length = 462 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 250 cttggccttctccttcctcttttcctcca 278 |||||| |||||||||||||| ||||||| Sbjct: 366 cttggctttctccttcctcttctcctcca 338
>ref|NM_113395.2| Arabidopsis thaliana structural constituent of ribosome AT3G24830 mRNA, complete cds Length = 882 Score = 42.1 bits (21), Expect = 1.4 Identities = 48/57 (84%) Strand = Plus / Minus Query: 337 gcagtacctgtgcccaggctgcagcctcagaaccttgagcgcgtcgggaatgaccat 393 ||||||| |||| |||| ||| ||||||| |||||||| || || ||||||||||| Sbjct: 473 gcagtacttgtgaccagcctgaagcctcaacaccttgagagcatcaggaatgaccat 417
>ref|NM_001016486.2| Xenopus tropicalis hypothetical protein LOC549240 (LOC549240), mRNA Length = 771 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 250 cttggccttctccttcctcttttcctcca 278 ||||||||||||||| ||||| ||||||| Sbjct: 584 cttggccttctcctttctcttctcctcca 556
>ref|XM_418218.1| PREDICTED: Gallus gallus similar to chromosome 19 open reading frame 21 (LOC420097), mRNA Length = 2960 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 259 ctccttcctcttttcctccagctcc 283 |||||||||||| |||||||||||| Sbjct: 582 ctccttcctcttgtcctccagctcc 558
>gb|AC006043.1| Homo sapiens BAC clone RP11-538D15 from 7, complete sequence Length = 189036 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 250 cttggccttctccttcctctt 270 ||||||||||||||||||||| Sbjct: 115153 cttggccttctccttcctctt 115133
>emb|BX000688.11| Human DNA sequence from clone DAQB-36F16 on chromosome 6 Contains the GPR53P pseudogene for G protein-coupled receptor 53, the OR2I1P pseudogene for olfactory receptor, family 2, subfamily I, member 1, the UBD gene for ubiquitin D, the OR2H5P pseudogene for olfactory receptor, family 2, subfamily H, member 5, the RPL13AP pseudogene for ribosomal protein L13a, the OR2H2 gene for olfactory receptor, family 2, subfamily H, member 2, the GABBR1 gene for gamma-aminobutyric acid (GABA) B receptor, 1, and 3 CpG islands, complete sequence Length = 102684 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 250 cttggccttctccttcctctt 270 ||||||||||||||||||||| Sbjct: 50599 cttggccttctccttcctctt 50579
>emb|AL662826.11| Human DNA sequence from clone XXbac-101I20 on chromosome 6 contains a MAS1 oncogene pseudogene, a olfactory receptor, family 2, subfamily I, member 1 pseudogene (OR2I1P, HS6M1-14P), the UBD gene for ubiquitin D (FAT10), a olfactory receptor, family 2, subfamily H, member 5 pseudogene (OR2H5P, HS6M1-13P), a 60S ribosomal protein L13A (RPL13A) pseudogene, the OR2H2 gene for olfactory receptor, family 2, subfamily H, member 2 (HS6M1-12), the GABBR1 gene for gamma-aminobutryic acid (GABA) B receptor, 1 (GPRC3A, GABABR1), the 5' end of the MOG gene for myelin oligodendrocyte protein and three CpG islands, complete sequence Length = 145431 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 250 cttggccttctccttcctctt 270 ||||||||||||||||||||| Sbjct: 57020 cttggccttctccttcctctt 57000
>emb|AL645936.5| Human DNA sequence from clone XXbac-126D10 on chromosome 6 contains the OR2H2 gene for olfactory receptor, family 2, subfamily H, member 2, the OR2I1P and OR2H5P pseudogenes for olfactory receptor, family 2, subfamily I, member 1 and subfamily H, member 5, the UBD gene for ubiquitin D, a 60S ribosomal protein L13A (RPL13A) pseudogene, the GABBR1 gene for gamma-aminobutyric acid (GABA) B receptor, 1, a SMT3 suppressor of mif two 3 homolog 1 (SMT3H1) pseudogene, the MOG gene for myelin oligodendrocyte glycoprotein, the gene for a novel KRAB box-containing C2H2 type zinc finger protein and four CpG islands, complete sequence Length = 155874 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 250 cttggccttctccttcctctt 270 ||||||||||||||||||||| Sbjct: 33892 cttggccttctccttcctctt 33872
>emb|AL109827.8|HSJ309K20 Human DNA sequence from clone RP1-309K20 on chromosome 20 Contains the 5' end of the FER1L4 gene for fer-1-like 4 (C. elegans), the C20orf124 gene for chromosome 20 open reading frame 124, the SPAG4 gene for sperm associated antigen 4, the CPNE1 gene for copine I, the RBM12 gene for RNA binding motif protein 12, the 3' end of the NIFS gene for nitrogen fixation 1 (S. cerevisiae) and four CpG islands, complete sequence Length = 98599 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 255 ccttctccttcctcttttcct 275 ||||||||||||||||||||| Sbjct: 86556 ccttctccttcctcttttcct 86576
>gb|AY150392.1| Arabidopsis thaliana putative 60S ribosomal protein (At3g24830) mRNA, complete cds Length = 652 Score = 42.1 bits (21), Expect = 1.4 Identities = 48/57 (84%) Strand = Plus / Minus Query: 337 gcagtacctgtgcccaggctgcagcctcagaaccttgagcgcgtcgggaatgaccat 393 ||||||| |||| |||| ||| ||||||| |||||||| || || ||||||||||| Sbjct: 423 gcagtacttgtgaccagcctgaagcctcaacaccttgagagcatcaggaatgaccat 367
>emb|CR759766.5| Human DNA sequence from clone DAMA-BMC177C8 on chromosome 6, complete sequence Length = 127280 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 250 cttggccttctccttcctctt 270 ||||||||||||||||||||| Sbjct: 28918 cttggccttctccttcctctt 28898
>emb|AL645748.9| Mouse DNA sequence from clone RP23-241E24 on chromosome 13 Contains a CpG island, complete sequence Length = 58318 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 261 ccttcctcttttcctccagctccct 285 ||||||||||||||||||| ||||| Sbjct: 6190 ccttcctcttttcctccaggtccct 6214
>emb|CR759870.6| Human DNA sequence from clone DADB-225M10 on chromosome 6, complete sequence Length = 57743 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 250 cttggccttctccttcctctt 270 ||||||||||||||||||||| Sbjct: 5744 cttggccttctccttcctctt 5724
>emb|CR788300.6| Human DNA sequence from clone DAAP-188P13 on chromosome 6, complete sequence Length = 78908 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 250 cttggccttctccttcctctt 270 ||||||||||||||||||||| Sbjct: 54303 cttggccttctccttcctctt 54283
>gb|AC161626.6| Pan troglodytes BAC clone CH251-114C24 from chromosome unknown, complete sequence Length = 167136 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 255 ccttctccttcctcttttcct 275 ||||||||||||||||||||| Sbjct: 139866 ccttctccttcctcttttcct 139886
>gb|DP000062.1| Sus scrofa target 117 genomic scaffold Length = 605739 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 250 cttggccttctccttcctctt 270 ||||||||||||||||||||| Sbjct: 206963 cttggccttctccttcctctt 206943
>ref|NM_203308.1| Homo sapiens ribosomal protein L13A-like (MGC34774), mRNA Length = 1848 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 250 cttggccttctccttcctctt 270 ||||||||||||||||||||| Sbjct: 1096 cttggccttctccttcctctt 1076
>gb|AC006137.3|AC006137 Homo sapiens clone SCb-254N2 (UWGC:rg254N02) from 6p21, complete sequence Length = 129806 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 250 cttggccttctccttcctctt 270 ||||||||||||||||||||| Sbjct: 74304 cttggccttctccttcctctt 74324
>emb|BX927223.9| Human DNA sequence from clone DAMA-380P17 on chromosome 6, complete sequence Length = 83649 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 250 cttggccttctccttcctctt 270 ||||||||||||||||||||| Sbjct: 76920 cttggccttctccttcctctt 76900
>dbj|AB168305.1| Macaca fascicularis testis cDNA clone: QtsA-11103, similar to human ribosomal protein L13a (RPL13A), mRNA, RefSeq: NM_012423.2 Length = 680 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 250 cttggccttctccttcctcttttcctcca 278 |||||| |||||||||||||| ||||||| Sbjct: 517 cttggctttctccttcctcttctcctcca 489
>gb|AC091989.3| Homo sapiens chromosome 5 clone RP11-76H13, complete sequence Length = 168575 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 257 ttctccttcctcttttcctcc 277 ||||||||||||||||||||| Sbjct: 89242 ttctccttcctcttttcctcc 89262
>gb|AC148698.1| Macaca mulatta Major Histocompatibility Complex BAC MMU268P23, complete sequence Length = 185838 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 250 cttggccttctccttcctctt 270 ||||||||||||||||||||| Sbjct: 9142 cttggccttctccttcctctt 9122
>gb|AC148689.1| Macaca mulatta Major Histocompatibility Complex BAC MMU222I18, complete sequence Length = 174202 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 250 cttggccttctccttcctctt 270 ||||||||||||||||||||| Sbjct: 106204 cttggccttctccttcctctt 106184
>emb|BX825905.1|CNS0A58U Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL71ZC01 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 805 Score = 42.1 bits (21), Expect = 1.4 Identities = 48/57 (84%) Strand = Plus / Minus Query: 337 gcagtacctgtgcccaggctgcagcctcagaaccttgagcgcgtcgggaatgaccat 393 ||||||| |||| |||| ||| ||||||| |||||||| || || ||||||||||| Sbjct: 454 gcagtacttgtgaccagcctgaagcctcaacaccttgagagcatcaggaatgaccat 398
>gb|AY086819.1| Arabidopsis thaliana clone 28093 mRNA, complete sequence Length = 799 Score = 42.1 bits (21), Expect = 1.4 Identities = 48/57 (84%) Strand = Plus / Minus Query: 337 gcagtacctgtgcccaggctgcagcctcagaaccttgagcgcgtcgggaatgaccat 393 ||||||| |||| |||| ||| ||||||| |||||||| || || ||||||||||| Sbjct: 467 gcagtacttgtgaccagcctgaagcctcaacaccttgagagcatcaggaatgaccat 411
>gb|AY855164.1| Callithrix jacchus RPGR mRNA, partial cds Length = 1818 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 255 ccttctccttcctcttttcct 275 ||||||||||||||||||||| Sbjct: 554 ccttctccttcctcttttcct 534
>gb|BC027852.1| Homo sapiens ribosomal protein L13A-like, mRNA (cDNA clone MGC:34774 IMAGE:5207622), complete cds Length = 1848 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 250 cttggccttctccttcctctt 270 ||||||||||||||||||||| Sbjct: 1096 cttggccttctccttcctctt 1076
>emb|BX842691.5| Zebrafish DNA sequence from clone DKEY-239I20 in linkage group 20, complete sequence Length = 92189 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 338 cagtacctgtgcccaggctgcagcc 362 |||||||||||| |||||||||||| Sbjct: 37613 cagtacctgtgctcaggctgcagcc 37637
>emb|BX255937.13| Zebrafish DNA sequence from clone CH211-191D7 in linkage group 20, complete sequence Length = 165726 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 338 cagtacctgtgcccaggctgcagcc 362 |||||||||||| |||||||||||| Sbjct: 114280 cagtacctgtgctcaggctgcagcc 114256
>emb|CR760846.2| Xenopus tropicalis finished cDNA, clone TTpA004d22 Length = 771 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 250 cttggccttctccttcctcttttcctcca 278 ||||||||||||||| ||||| ||||||| Sbjct: 584 cttggccttctcctttctcttctcctcca 556
>gb|AF002406.1|AF002406 Pronothobranchius kiyawensis 16S ribosomal RNA gene, mitochondrial gene for mitochondrial rRNA, partial sequence Length = 472 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 66 caaactacttaaagaacaagtagga 90 ||||||||||||| ||||||||||| Sbjct: 202 caaactacttaaacaacaagtagga 226
>emb|AL031983.2|HS271M21 Human DNA sequence from clone RP1-271M21 on chromosome 6p21.31-22.2 Contains a MAS1 oncogene pseudogene, the OR2H2 gene for olfactory receptor 2H2, olfactory receptor 2I1 and 2H5 pseudogenes OR2I1P and OR2H5P, the gene for diubiquitin, an RPL13A (60S Ribosomal Protein L13A) pseudogene, the GABBR1 gene for gamma-aminobutyric acid (GABA) B receptor 1 and an SMT3H1 or SMT3H2 (SMT3 (suppressor of mif two 3, yeast) homolog) pseudogene and three CpG islands, complete sequence Length = 134292 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 250 cttggccttctccttcctctt 270 ||||||||||||||||||||| Sbjct: 79300 cttggccttctccttcctctt 79280
>gb|AC099743.3| Papio anubis clone RP41-450I16, complete sequence Length = 115022 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 257 ttctccttcctcttttcctc 276 |||||||||||||||||||| Sbjct: 71049 ttctccttcctcttttcctc 71030
>gb|AC115061.20| Mus musculus chromosome 1, clone RP24-399G3, complete sequence Length = 203058 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 259 ctccttcctcttttcctcca 278 |||||||||||||||||||| Sbjct: 159848 ctccttcctcttttcctcca 159867
>gb|AC126115.5| Rattus norvegicus 4 BAC CH230-213L22 (Children's Hospital Oakland Research Institute) complete sequence Length = 214442 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 256 cttctccttcctcttttcct 275 |||||||||||||||||||| Sbjct: 190669 cttctccttcctcttttcct 190650
>gb|AY168655.3| Porella platyphylla tRNA-Lys (trnK) gene, intron; chloroplast Length = 2117 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 272 tcctccagctccctgatggt 291 |||||||||||||||||||| Sbjct: 549 tcctccagctccctgatggt 530
>gb|BC052385.1| Mus musculus chromodomain helicase DNA binding protein 1-like, mRNA (cDNA clone MGC:57944 IMAGE:5703859), complete cds Length = 3018 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 255 ccttctccttcctcttttcctcca 278 |||||||||||||||| ||||||| Sbjct: 2014 ccttctccttcctcttctcctcca 1991
>ref|XM_952952.1| Neurospora crassa OR74A hypothetical protein (NCU06939.1) partial mRNA Length = 1905 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 274 ctccagctccctgatggtgt 293 |||||||||||||||||||| Sbjct: 1407 ctccagctccctgatggtgt 1388
>ref|XM_327224.1| Neurospora crassa OR74A hypothetical protein (NCU06939.1) partial mRNA Length = 1905 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 274 ctccagctccctgatggtgt 293 |||||||||||||||||||| Sbjct: 1407 ctccagctccctgatggtgt 1388
>ref|NM_026539.1| Mus musculus chromodomain helicase DNA binding protein 1-like (Chd1l), mRNA Length = 2991 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 255 ccttctccttcctcttttcctcca 278 |||||||||||||||| ||||||| Sbjct: 2032 ccttctccttcctcttctcctcca 2009
>gb|AC146171.2| Pan troglodytes BAC clone RP43-24K1 from 7, complete sequence Length = 131575 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 257 ttctccttcctcttttcctc 276 |||||||||||||||||||| Sbjct: 90410 ttctccttcctcttttcctc 90391
>ref|XR_002787.1| PREDICTED: Mus musculus similar to ribosomal protein L13a (LOC624863), mRNA Length = 632 Score = 40.1 bits (20), Expect = 5.5 Identities = 29/32 (90%) Strand = Plus / Minus Query: 248 accttggccttctccttcctcttttcctccag 279 ||||||||||||||||||| || |||||||| Sbjct: 517 accttggccttctccttccgtttctcctccag 486
>ref|XR_004732.1| PREDICTED: Mus musculus similar to ribosomal protein L13a (LOC624863), mRNA Length = 632 Score = 40.1 bits (20), Expect = 5.5 Identities = 29/32 (90%) Strand = Plus / Minus Query: 248 accttggccttctccttcctcttttcctccag 279 ||||||||||||||||||| || |||||||| Sbjct: 517 accttggccttctccttccgtttctcctccag 486
>gb|AC146025.2| Pan troglodytes BAC clone RP43-119E9 from 7, complete sequence Length = 156630 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 257 ttctccttcctcttttcctc 276 |||||||||||||||||||| Sbjct: 5631 ttctccttcctcttttcctc 5650
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 369 ccttgagcgcgtcgggaatgacca 392 ||||||||| |||||||||||||| Sbjct: 4970943 ccttgagcgtgtcgggaatgacca 4970966
>ref|XM_568754.1| Cryptococcus neoformans var. neoformans JEC21 exonuclease (CNB00080) partial mRNA Length = 3126 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 cttggccttctccttcctct 269 |||||||||||||||||||| Sbjct: 2118 cttggccttctccttcctct 2099
>gb|AC130541.4| Mus musculus BAC clone RP24-124P9 from chromosome 3, complete sequence Length = 191814 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 255 ccttctccttcctcttttcctcca 278 |||||||||||||||| ||||||| Sbjct: 25560 ccttctccttcctcttctcctcca 25583
>gb|AC134901.4| Mus musculus BAC clone RP23-287E23 from chromosome 18, complete sequence Length = 188224 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 255 ccttctccttcctcttttcc 274 |||||||||||||||||||| Sbjct: 141000 ccttctccttcctcttttcc 141019
>gb|AC122213.4| Mus musculus BAC clone RP23-104C8 from chromosome 18, complete sequence Length = 188125 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 255 ccttctccttcctcttttcc 274 |||||||||||||||||||| Sbjct: 5787 ccttctccttcctcttttcc 5806
>gb|BC020486.1| Mus musculus chromodomain helicase DNA binding protein 1-like, mRNA (cDNA clone IMAGE:3708149) Length = 1179 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 255 ccttctccttcctcttttcctcca 278 |||||||||||||||| ||||||| Sbjct: 202 ccttctccttcctcttctcctcca 179
>gb|AC099668.2| Homo sapiens chromosome 3 clone RP11-901L6, complete sequence Length = 242222 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 272 tcctccagctccctgatggt 291 |||||||||||||||||||| Sbjct: 238116 tcctccagctccctgatggt 238097
>gb|AC127369.4| Mus musculus BAC clone RP23-26A15 from 8, complete sequence Length = 211411 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 320 gagagctggcccaggaggca 339 |||||||||||||||||||| Sbjct: 116657 gagagctggcccaggaggca 116638
>gb|AC131652.2| Mus musculus BAC clone RP23-216A20 from 16, complete sequence Length = 184989 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 262 cttcctcttttcctccagct 281 |||||||||||||||||||| Sbjct: 16646 cttcctcttttcctccagct 16627
>gb|AC121768.2| Mus musculus BAC clone RP23-339H16 from 15, complete sequence Length = 199607 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 254 gccttctccttcctcttttcctcc 277 ||||||||||||||||| |||||| Sbjct: 60994 gccttctccttcctcttctcctcc 61017
>emb|CR727990.2|CNS0GONW Tetraodon nigroviridis full-length cDNA Length = 1347 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 256 cttctccttcctcttttcctccag 279 |||||||||||||| ||||||||| Sbjct: 244 cttctccttcctctcttcctccag 221
>gb|AC073424.8| Homo sapiens BAC clone RP11-653O17 from 7, complete sequence Length = 191141 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 318 tggagagctggcccaggagg 337 |||||||||||||||||||| Sbjct: 7059 tggagagctggcccaggagg 7078
>gb|AC112926.7| Mus musculus chromosome 3, clone RP23-215M7, complete sequence Length = 222106 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 267 tcttttcctccagctccctg 286 |||||||||||||||||||| Sbjct: 52046 tcttttcctccagctccctg 52065
>emb|Z93096.1|HS390B3 Human DNA sequence from clone CTA-390B3 on chromosome 22q12-13, complete sequence Length = 92510 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 274 ctccagctccctgatggtgt 293 |||||||||||||||||||| Sbjct: 3789 ctccagctccctgatggtgt 3808
>ref|XM_504032.1| Yarrowia lipolytica CLIB122, YALI0E16665g predicted mRNA Length = 762 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 183 tctcctcggctgccttctcggcct 206 |||||| ||||||||||||||||| Sbjct: 574 tctccttggctgccttctcggcct 551
>ref|XM_776312.1| PREDICTED: Strongylocentrotus purpuratus similar to excision repair cross-complementing rodent repair deficiency complementation group 6 - like (LOC575953), mRNA Length = 1773 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 73 cttaaagaacaagtaggaggacag 96 ||||||||||||| |||||||||| Sbjct: 1086 cttaaagaacaagaaggaggacag 1109
>gb|BC057567.1| Mus musculus chromodomain helicase DNA binding protein 1-like, mRNA (cDNA clone MGC:66868 IMAGE:6415898), complete cds Length = 3037 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 255 ccttctccttcctcttttcctcca 278 |||||||||||||||| ||||||| Sbjct: 2043 ccttctccttcctcttctcctcca 2020
>gb|AE017342.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 2, complete sequence Length = 1632307 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 250 cttggccttctccttcctct 269 |||||||||||||||||||| Sbjct: 20767 cttggccttctccttcctct 20786
>gb|AC104452.2| Homo sapiens chromosome 3 clone RP11-949J7, complete sequence Length = 186563 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 272 tcctccagctccctgatggt 291 |||||||||||||||||||| Sbjct: 69300 tcctccagctccctgatggt 69281
>gb|AC183545.2| Pan troglodytes BAC clone CH251-233G24 from chromosome 19, complete sequence Length = 151627 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 261 ccttcctcttttcctccagctccc 284 |||| ||||||||||||||||||| Sbjct: 5164 ccttgctcttttcctccagctccc 5187
>ref|NM_079920.2| Drosophila melanogaster gomdanji CG6727-RA (gom), mRNA Length = 1286 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 247 gaccttggccttctccttcc 266 |||||||||||||||||||| Sbjct: 951 gaccttggccttctccttcc 932
>gb|AC098839.3| Genomic sequence for Mus musculus, clone RP23-469C2, complete sequence Length = 192470 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 344 ctgtgcccaggctgcagcct 363 |||||||||||||||||||| Sbjct: 69368 ctgtgcccaggctgcagcct 69349
>gb|AC010265.5| Homo sapiens chromosome 5 clone CTC-470E21, complete sequence Length = 126619 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 254 gccttctccttcctcttttc 273 |||||||||||||||||||| Sbjct: 126394 gccttctccttcctcttttc 126413
>gb|AC104126.2| Homo sapiens chromosome 5 clone RP11-526F3, complete sequence Length = 187914 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 254 gccttctccttcctcttttc 273 |||||||||||||||||||| Sbjct: 146002 gccttctccttcctcttttc 145983
>dbj|AK165656.1| Mus musculus kidney CCL-142 RAG cDNA, RIKEN full-length enriched library, clone:G430108O15 product:chromodomain helicase DNA binding protein 1-like, full insert sequence Length = 2716 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 255 ccttctccttcctcttttcctcca 278 |||||||||||||||| ||||||| Sbjct: 2057 ccttctccttcctcttctcctcca 2034
>gb|AC060766.8| Homo sapiens chromosome 17, clone RP11-686D22, complete sequence Length = 169675 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 262 cttcctcttttcctccagct 281 |||||||||||||||||||| Sbjct: 72744 cttcctcttttcctccagct 72763
>gb|AC099019.1| Drosophila melanogaster, chromosome 2R, region 58C-58D, BAC clone BACR02O12, complete sequence Length = 171594 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 247 gaccttggccttctccttcc 266 |||||||||||||||||||| Sbjct: 105322 gaccttggccttctccttcc 105341
>gb|AC073850.4| Homo sapiens BAC clone RP11-697H17 from 7, complete sequence Length = 183846 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 257 ttctccttcctcttttcctc 276 |||||||||||||||||||| Sbjct: 84785 ttctccttcctcttttcctc 84804
>gb|AC182810.1| Gasterosteus aculeatus clone VMRC28-119K03, complete sequence Length = 131913 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 258 tctccttcctcttttcctcc 277 |||||||||||||||||||| Sbjct: 85845 tctccttcctcttttcctcc 85826
>gb|AC121357.14| Mus musculus chromosome 15, clone RP23-56D7, complete sequence Length = 177867 Score = 40.1 bits (20), Expect = 5.5 Identities = 29/32 (90%) Strand = Plus / Plus Query: 248 accttggccttctccttcctcttttcctccag 279 ||||||||||||||||||| || |||||||| Sbjct: 124043 accttggccttctccttccgtttctcctccag 124074
>gb|S48758.1| cyclin B [goldfish, oocytes, mRNA, 1425 nt] Length = 1425 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 94 cagaggtttcccaaaactga 113 |||||||||||||||||||| Sbjct: 815 cagaggtttcccaaaactga 796
>gb|AC154231.2| Mus musculus BAC clone RP24-339I11 from chromosome 13, complete sequence Length = 141075 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 258 tctccttcctcttttcctcc 277 |||||||||||||||||||| Sbjct: 128514 tctccttcctcttttcctcc 128495
>gb|BC066506.1| Danio rerio tropomyosin 1 (alpha), mRNA (cDNA clone MGC:77009 IMAGE:6805687), complete cds Length = 1719 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 183 tctcctcggctgccttctcggcct 206 |||| ||||||||||||||||||| Sbjct: 441 tctcatcggctgccttctcggcct 418
>gb|BC045504.1| Danio rerio tropomyosin 1 (alpha), mRNA (cDNA clone MGC:55951 IMAGE:3819329), complete cds Length = 1217 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 183 tctcctcggctgccttctcggcct 206 |||| ||||||||||||||||||| Sbjct: 436 tctcatcggctgccttctcggcct 413
>dbj|AK014473.1| Mus musculus 14 days embryo liver cDNA, RIKEN full-length enriched library, clone:4432404A22 product:CDNA FLJ10480 FIS, CLONE NT2RP2000126, WEAKLY SIMILAR TO POSSIBLE GLOBAL TRANSCRIPTION ACTIVATOR SNF2L (FRAGMENT) homolog [Homo sapiens], full insert sequence Length = 2991 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 255 ccttctccttcctcttttcctcca 278 |||||||||||||||| ||||||| Sbjct: 2032 ccttctccttcctcttctcctcca 2009
>dbj|AK047492.1| Mus musculus 10 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:B930078N17 product:unclassifiable, full insert sequence Length = 1577 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 320 gagagctggcccaggaggca 339 |||||||||||||||||||| Sbjct: 272 gagagctggcccaggaggca 253
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 259 ctccttcctcttttcctcca 278 |||||||||||||||||||| Sbjct: 11624105 ctccttcctcttttcctcca 11624124
>gb|DP000027.1| Rattus norvegicus target 1 genomic scaffold Length = 1888123 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 256 cttctccttcctcttttcct 275 |||||||||||||||||||| Sbjct: 198344 cttctccttcctcttttcct 198325
>gb|AC147097.3| Pan troglodytes BAC clone RP43-51D4 from chromosome 7, complete sequence Length = 192069 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 257 ttctccttcctcttttcctc 276 |||||||||||||||||||| Sbjct: 113065 ttctccttcctcttttcctc 113084
>gb|AC017048.6| Homo sapiens BAC clone RP11-324L17 from 2, complete sequence Length = 186373 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 258 tctccttcctcttttcctcc 277 |||||||||||||||||||| Sbjct: 96960 tctccttcctcttttcctcc 96979
>gb|AC005539.1| Homo sapiens BAC clone RP11-335J18 from 2, complete sequence Length = 209613 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 259 ctccttcctcttttcctcca 278 |||||||||||||||||||| Sbjct: 11613 ctccttcctcttttcctcca 11632
>ref|XM_342921.2| PREDICTED: Rattus norvegicus similar to RIKEN cDNA 9330177P20 (LOC362602), mRNA Length = 2967 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 191 gctgccttctcggccttgac 210 |||||||||||||||||||| Sbjct: 2845 gctgccttctcggccttgac 2864
>gb|AC009301.3| Homo sapiens BAC clone RP11-62F14 from 2, complete sequence Length = 129625 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 81 acaagtaggaggacagaggt 100 |||||||||||||||||||| Sbjct: 47410 acaagtaggaggacagaggt 47391
>gb|AC136603.3| Homo sapiens chromosome 16 clone RP11-133M8, complete sequence Length = 183708 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 253 ggccttctccttcctctttt 272 |||||||||||||||||||| Sbjct: 132624 ggccttctccttcctctttt 132643
>gb|AC009141.7| Homo sapiens chromosome 16 clone RP11-543G23, complete sequence Length = 201716 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 253 ggccttctccttcctctttt 272 |||||||||||||||||||| Sbjct: 60081 ggccttctccttcctctttt 60100
>gb|AF273495.1|AF273495 Carassius auratus cyclin B mRNA, complete cds Length = 1501 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 94 cagaggtttcccaaaactga 113 |||||||||||||||||||| Sbjct: 877 cagaggtttcccaaaactga 858
>emb|AL671536.8| Mouse DNA sequence from clone RP23-291O10 on chromosome X, complete sequence Length = 221255 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 256 cttctccttcctcttttcct 275 |||||||||||||||||||| Sbjct: 171830 cttctccttcctcttttcct 171811
>gb|AF045470.1|AF045470 Drosophila melanogaster Gom (gom) mRNA, complete cds Length = 1248 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 247 gaccttggccttctccttcc 266 |||||||||||||||||||| Sbjct: 951 gaccttggccttctccttcc 932
>emb|Z24650.1|HSA132ZC9 H. sapiens (D2S400) DNA segment containing (CA) repeat; clone AFMa132zc9; single read Length = 386 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 81 acaagtaggaggacagaggt 100 |||||||||||||||||||| Sbjct: 131 acaagtaggaggacagaggt 150
>gb|AC151896.3| Mus musculus BAC clone RP24-501F15 from 18, complete sequence Length = 189528 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 125 agctctgatctctcttagtatttg 148 |||||||||||||||| ||||||| Sbjct: 30953 agctctgatctctcttggtatttg 30976
>gb|AE003456.3| Drosophila melanogaster chromosome 2R, section 64 of 73 of the complete sequence Length = 288451 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 247 gaccttggccttctccttcc 266 |||||||||||||||||||| Sbjct: 142904 gaccttggccttctccttcc 142885
>gb|AC140839.9| Mus musculus chromosome 3, clone RP24-316D12, complete sequence Length = 168722 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 255 ccttctccttcctcttttcctcca 278 |||||||||||||||| ||||||| Sbjct: 69068 ccttctccttcctcttctcctcca 69045
>gb|AC146916.3| Rattus norvegicus strain Brown Norway clone CH230-206L9, complete sequence Length = 215015 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 256 cttctccttcctcttttcct 275 |||||||||||||||||||| Sbjct: 198344 cttctccttcctcttttcct 198325
>dbj|AP001972.4| Homo sapiens genomic DNA, chromosome 11q, clone:CTD-2562J17, complete sequences Length = 215225 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 321 agagctggcccaggaggcag 340 |||||||||||||||||||| Sbjct: 11483 agagctggcccaggaggcag 11464
>dbj|AP003175.2| Homo sapiens genomic DNA, chromosome 11q clone:RP11-158C6, complete sequence Length = 81000 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 321 agagctggcccaggaggcag 340 |||||||||||||||||||| Sbjct: 56273 agagctggcccaggaggcag 56254
>gb|AC154565.2| Mus musculus BAC clone RP23-403J19 from chromosome 16, complete sequence Length = 202981 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 262 cttcctcttttcctccagct 281 |||||||||||||||||||| Sbjct: 9546 cttcctcttttcctccagct 9565
>gb|BC079034.1| Rattus norvegicus similar to hypothetical protein R30953_1, mRNA (cDNA clone MGC:93963 IMAGE:7114307), complete cds Length = 1682 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 152 ggggccaggctctccagctg 171 |||||||||||||||||||| Sbjct: 37 ggggccaggctctccagctg 56
>gb|BC079061.1| Rattus norvegicus similar to hypothetical protein R30953_1, mRNA (cDNA clone MGC:94006 IMAGE:7115757), complete cds Length = 1760 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 152 ggggccaggctctccagctg 171 |||||||||||||||||||| Sbjct: 43 ggggccaggctctccagctg 62
>ref|NM_200934.2| Danio rerio tropomyosin 1 (alpha) (tpm1), mRNA Length = 1719 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 183 tctcctcggctgccttctcggcct 206 |||| ||||||||||||||||||| Sbjct: 441 tctcatcggctgccttctcggcct 418
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 259 ctccttcctcttttcctcca 278 |||||||||||||||||||| Sbjct: 11623776 ctccttcctcttttcctcca 11623795
>ref|NM_001014016.1| Rattus norvegicus similar to hypothetical protein R30953_1 (RGD1311107), mRNA Length = 1760 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 152 ggggccaggctctccagctg 171 |||||||||||||||||||| Sbjct: 43 ggggccaggctctccagctg 62
>emb|AL772424.5|CNS08CA2 Oryza sativa chromosome 12, . BAC OJ1118_B01 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 108927 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 259 ctccttcctcttttcctcca 278 |||||||||||||||||||| Sbjct: 36723 ctccttcctcttttcctcca 36704
>gb|AC003054.1|AC003054 Drosophila melanogaster DNA sequence (P1 DS04894 (D86)), complete sequence Length = 47334 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 247 gaccttggccttctccttcc 266 |||||||||||||||||||| Sbjct: 22509 gaccttggccttctccttcc 22490
>gb|BC062966.1| Mus musculus chromodomain helicase DNA binding protein 1-like, mRNA (cDNA clone MGC:64788 IMAGE:6415898), complete cds Length = 3066 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 255 ccttctccttcctcttttcctcca 278 |||||||||||||||| ||||||| Sbjct: 2043 ccttctccttcctcttctcctcca 2020
>emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB 122 of Yarrowia lipolytica Length = 4224103 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 183 tctcctcggctgccttctcggcct 206 |||||| ||||||||||||||||| Sbjct: 1975373 tctccttggctgccttctcggcct 1975350
>gb|AC171072.2| Rhesus Macaque CHR7 BAC CH250-508E7 (Children's Hospital Oakland Research Institute Rhesus macaque Adult Male BAC Library) complete sequence Length = 165491 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 257 ttctccttcctcttttcctc 276 |||||||||||||||||||| Sbjct: 44040 ttctccttcctcttttcctc 44021
>dbj|D50327.1|HRSIASP Horse mRNA for inhibin alpha subunit precursor, complete cds Length = 1286 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 319 ggagagctggcccaggaggc 338 |||||||||||||||||||| Sbjct: 309 ggagagctggcccaggaggc 328 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,489,365 Number of Sequences: 3902068 Number of extensions: 4489365 Number of successful extensions: 124888 Number of sequences better than 10.0: 198 Number of HSP's better than 10.0 without gapping: 198 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 124310 Number of HSP's gapped (non-prelim): 577 length of query: 413 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 391 effective length of database: 17,147,199,772 effective search space: 6704555110852 effective search space used: 6704555110852 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
