ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags8p19
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Y209_ENCCU (Q8SWH3) Hypothetical protein ECU02_0090 33 0.92
2TECTA_HUMAN (O75443) Alpha-tectorin precursor 30 4.6
3ECH12_MYCLE (P53526) Probable enoyl-CoA hydratase echA12 (EC 4.2... 30 6.0

>Y209_ENCCU (Q8SWH3) Hypothetical protein ECU02_0090|
          Length = 258

 Score = 32.7 bits (73), Expect = 0.92
 Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 10/85 (11%)
 Frame = -1

Query: 505 IKESTLVYL*CLFIQVSIFSQLV---------DIFLY-IVGGSIKLNSSSYSYIKCFFIT 356
           I  STL+ L   F+ ++IFS +          D+F Y I+  S  +  +      C FIT
Sbjct: 87  ILHSTLIVLLLAFVIINIFSSITFVTDKWNSEDLFFYSIILPSFFIPPTYLLSTSCDFIT 146

Query: 355 SSFYTTLTSSIMDIFCDLKLLISVL 281
           +SF    T++ ++I  DL +L+S L
Sbjct: 147 TSF----TATGINILVDLMILLSYL 167



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>TECTA_HUMAN (O75443) Alpha-tectorin precursor|
          Length = 2155

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +1

Query: 73   ARTDXNCTIXXMAHLLTMEFIPLSYET*VQKFLC 174
            ARTD +C +    H LT +  P  ++T     LC
Sbjct: 1094 ARTDASCIVSGYGHYLTFDGFPFDFQTSCPLILC 1127



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>ECH12_MYCLE (P53526) Probable enoyl-CoA hydratase echA12 (EC 4.2.1.17)|
          Length = 294

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 16/70 (22%), Positives = 34/70 (48%)
 Frame = +1

Query: 70  IARTDXNCTIXXMAHLLTMEFIPLSYET*VQKFLCCVDLNVPSRHHRHLLTTFLATEKET 249
           +++TD +CTI  + +    + + L +    +  +  + LN P R +   L    + ++  
Sbjct: 1   MSQTDASCTIAELPYRSVTDLVVLDFP---RPEVALITLNRPGRMNSMALDLMKSLKQVL 57

Query: 250 KQKTLDHDIR 279
           K+ T DH +R
Sbjct: 58  KRITYDHSVR 67


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,392,807
Number of Sequences: 219361
Number of extensions: 1416187
Number of successful extensions: 2462
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2462
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5881538857
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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