ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags8p06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK061950.1| Oryza sativa (japonica cultivar-group) cDNA clon... 353 4e-94
2dbj|AK120149.1| Oryza sativa (japonica cultivar-group) cDNA clon... 353 4e-94
3dbj|AK102653.1| Oryza sativa (japonica cultivar-group) cDNA clon... 353 4e-94
4dbj|AK098929.1| Oryza sativa (japonica cultivar-group) cDNA clon... 353 4e-94
5dbj|AK068415.1| Oryza sativa (japonica cultivar-group) cDNA clon... 353 4e-94
6gb|AY105839.1| Zea mays PCO061004 mRNA sequence 278 2e-71
7gb|AC134926.3| Oryza sativa (japonica cultivar-group) chromosome... 117 4e-23
8dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 117 4e-23
9gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 117 4e-23
10ref|XM_604879.2| PREDICTED: Bos taurus similar to Olfactory rece... 42 1.9
11gb|AC113597.12| Mus musculus chromosome 1, clone RP23-375F6, com... 42 1.9
12gb|AC160984.3| Mus musculus BAC clone RP23-260C12 from chromosom... 42 1.9
13gb|AC093545.1| Homo sapiens chromosome X clone RP5-1015P16A, com... 42 1.9
14gb|AC096716.3| Homo sapiens BAC clone RP11-8L2 from 4, complete ... 42 1.9
15gb|AC091167.19| Homo sapiens chromosome 15, clone RP11-697E2, co... 42 1.9
16gb|AC154333.2| Mus musculus BAC clone RP24-496M21 from 14, compl... 42 1.9
17gb|AC007486.1|AC007486 Homo sapiens clone DJ1015P16A, complete s... 42 1.9
18gb|AY485643.1| Hordeum vulgare subsp. vulgare BAC 615K1, complet... 40 7.6
19ref|XM_608267.2| PREDICTED: Bos taurus hypothetical LOC529808 (L... 40 7.6
20gb|AC154396.11| Mus musculus chromosome 3, clone RP24-254D5, com... 40 7.6
21gb|AC101889.6| Mus musculus chromosome 3, clone RP23-465M13, com... 40 7.6
22emb|AL442089.1|HSM802822 Homo sapiens mRNA; cDNA DKFZp761E2216 (... 40 7.6
23emb|AL845158.5| Mouse DNA sequence from clone RP23-147E6 on chro... 40 7.6
24gb|AC010973.6| Homo sapiens BAC clone RP11-148K1 from 7, complet... 40 7.6
25gb|AC149135.2| Medicago truncatula chromosome 2 BAC clone mth2-3... 40 7.6
26gb|AC080094.5| Homo sapiens BAC clone RP11-1007E2 from 2, comple... 40 7.6
27gb|AC134903.4| Mus musculus BAC clone RP23-329A21 from chromosom... 40 7.6
28gb|AC133097.3| Mus musculus BAC clone RP23-287O2 from 1, complet... 40 7.6
29gb|AC160723.2| Mus musculus BAC clone RP24-499G15 from chromosom... 40 7.6 
>dbj|AK061950.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-E10, full
            insert sequence
          Length = 1759

 Score =  353 bits (178), Expect = 4e-94
 Identities = 403/478 (84%)
 Strand = Plus / Minus

                                                                        
Query: 81   tgatgacgaatgtgcggatctccatgggcgccagctcaacgacgagcttggaggggtcca 140
            |||||| ||||||||| |||||||||||  |||| ||||||||||||||||| || || |
Sbjct: 1501 tgatgaggaatgtgcgtatctccatggggcccagatcaacgacgagcttggaaggatcta 1442

                                                                        
Query: 141  cgggtcctccacgggccacattttcttttggtggaggccctgccaccttccatttcagcc 200
            |||| ||||| ||| | |  ||||| |  |  ||||| ||| |||||||||| |||||||
Sbjct: 1441 cggggcctccccggacgatcttttcatcagcaggagggccttccaccttccacttcagcc 1382

                                                                        
Query: 201  tcttcttctccatggcggcgcgctcttggttcgctgataggcttgtttcaattatcttgc 260
            |||| ||||||||||| |  || ||||||||||||||||||||||| ||||  |||||| 
Sbjct: 1381 tctttttctccatggctgaacgttcttggttcgctgataggcttgtctcaacaatcttga 1322

                                                                        
Query: 261  cgacctttttatctgggaataccctcttgaggtcgacactcgccagagctgagagatcct 320
            | | ||| || ||||| ||||| ||||| |||||||| || || |||||||| |||||||
Sbjct: 1321 caatcttcttgtctggaaatactctcttcaggtcgacgctagctagagctgaaagatcct 1262

                                                                        
Query: 321  tatgctctccagcctcgtataggtgagccaaccgaaggagaacacttccatcttcaagtt 380
            | ||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||||
Sbjct: 1261 tgtgctctccagcctcgtataggtgagccaaccgaagaagaacagttccgtcttcaagtt 1202

                                                                        
Query: 381  cctcaagcgtaagcaacgcgacattttcaggaagactgtaagttggatccattgcagaga 440
            ||| ||| |||||||| || ||||| ||||| |  ||||| |  ||||||||||||||||
Sbjct: 1201 cctgaagagtaagcaatgcaacattatcaggcaagctgtaggccggatccattgcagaga 1142

                                                                        
Query: 441  aagatgaaacatgtgaattcgcccagttgcctccatcctgctctgcgaacgcaagaagaa 500
            |   || ||| ||||||||| |||| || ||||||||||||||||| || |||| |||||
Sbjct: 1141 attttgtaacgtgtgaattcacccaattacctccatcctgctctgcaaaagcaataagaa 1082

                                                                      
Query: 501  gaggggagtacagttcctgaccaaatgtacgacgccacctagccccgtcaccttgtgg 558
            |||||||||| | |||||| |||||||| || ||||||||||| || |||||||||||
Sbjct: 1081 gaggggagtatatttcctggccaaatgtccgccgccacctagctccttcaccttgtgg 1024
to top
>dbj|AK120149.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013029J19, full
            insert sequence
          Length = 2926

 Score =  353 bits (178), Expect = 4e-94
 Identities = 403/478 (84%)
 Strand = Plus / Minus

                                                                        
Query: 81   tgatgacgaatgtgcggatctccatgggcgccagctcaacgacgagcttggaggggtcca 140
            |||||| ||||||||| |||||||||||  |||| ||||||||||||||||| || || |
Sbjct: 2682 tgatgaggaatgtgcgtatctccatggggcccagatcaacgacgagcttggaaggatcta 2623

                                                                        
Query: 141  cgggtcctccacgggccacattttcttttggtggaggccctgccaccttccatttcagcc 200
            |||| ||||| ||| | |  ||||| |  |  ||||| ||| |||||||||| |||||||
Sbjct: 2622 cggggcctccccggacgatcttttcatcagcaggagggccttccaccttccacttcagcc 2563

                                                                        
Query: 201  tcttcttctccatggcggcgcgctcttggttcgctgataggcttgtttcaattatcttgc 260
            |||| ||||||||||| |  || ||||||||||||||||||||||| ||||  |||||| 
Sbjct: 2562 tctttttctccatggctgaacgttcttggttcgctgataggcttgtctcaacaatcttga 2503

                                                                        
Query: 261  cgacctttttatctgggaataccctcttgaggtcgacactcgccagagctgagagatcct 320
            | | ||| || ||||| ||||| ||||| |||||||| || || |||||||| |||||||
Sbjct: 2502 caatcttcttgtctggaaatactctcttcaggtcgacgctagctagagctgaaagatcct 2443

                                                                        
Query: 321  tatgctctccagcctcgtataggtgagccaaccgaaggagaacacttccatcttcaagtt 380
            | ||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||||
Sbjct: 2442 tgtgctctccagcctcgtataggtgagccaaccgaagaagaacagttccgtcttcaagtt 2383

                                                                        
Query: 381  cctcaagcgtaagcaacgcgacattttcaggaagactgtaagttggatccattgcagaga 440
            ||| ||| |||||||| || ||||| ||||| |  ||||| |  ||||||||||||||||
Sbjct: 2382 cctgaagagtaagcaatgcaacattatcaggcaagctgtaggccggatccattgcagaga 2323

                                                                        
Query: 441  aagatgaaacatgtgaattcgcccagttgcctccatcctgctctgcgaacgcaagaagaa 500
            |   || ||| ||||||||| |||| || ||||||||||||||||| || |||| |||||
Sbjct: 2322 attttgtaacgtgtgaattcacccaattacctccatcctgctctgcaaaagcaataagaa 2263

                                                                      
Query: 501  gaggggagtacagttcctgaccaaatgtacgacgccacctagccccgtcaccttgtgg 558
            |||||||||| | |||||| |||||||| || ||||||||||| || |||||||||||
Sbjct: 2262 gaggggagtatatttcctggccaaatgtccgccgccacctagctccttcaccttgtgg 2205
to top
>dbj|AK102653.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033101E19, full
            insert sequence
          Length = 2123

 Score =  353 bits (178), Expect = 4e-94
 Identities = 403/478 (84%)
 Strand = Plus / Minus

                                                                        
Query: 81   tgatgacgaatgtgcggatctccatgggcgccagctcaacgacgagcttggaggggtcca 140
            |||||| ||||||||| |||||||||||  |||| ||||||||||||||||| || || |
Sbjct: 1864 tgatgaggaatgtgcgtatctccatggggcccagatcaacgacgagcttggaaggatcta 1805

                                                                        
Query: 141  cgggtcctccacgggccacattttcttttggtggaggccctgccaccttccatttcagcc 200
            |||| ||||| ||| | |  ||||| |  |  ||||| ||| |||||||||| |||||||
Sbjct: 1804 cggggcctccccggacgatcttttcatcagcaggagggccttccaccttccacttcagcc 1745

                                                                        
Query: 201  tcttcttctccatggcggcgcgctcttggttcgctgataggcttgtttcaattatcttgc 260
            |||| ||||||||||| |  || ||||||||||||||||||||||| ||||  |||||| 
Sbjct: 1744 tctttttctccatggctgaacgttcttggttcgctgataggcttgtctcaacaatcttga 1685

                                                                        
Query: 261  cgacctttttatctgggaataccctcttgaggtcgacactcgccagagctgagagatcct 320
            | | ||| || ||||| ||||| ||||| |||||||| || || |||||||| |||||||
Sbjct: 1684 caatcttcttgtctggaaatactctcttcaggtcgacgctagctagagctgaaagatcct 1625

                                                                        
Query: 321  tatgctctccagcctcgtataggtgagccaaccgaaggagaacacttccatcttcaagtt 380
            | ||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||||
Sbjct: 1624 tgtgctctccagcctcgtataggtgagccaaccgaagaagaacagttccgtcttcaagtt 1565

                                                                        
Query: 381  cctcaagcgtaagcaacgcgacattttcaggaagactgtaagttggatccattgcagaga 440
            ||| ||| |||||||| || ||||| ||||| |  ||||| |  ||||||||||||||||
Sbjct: 1564 cctgaagagtaagcaatgcaacattatcaggcaagctgtaggccggatccattgcagaga 1505

                                                                        
Query: 441  aagatgaaacatgtgaattcgcccagttgcctccatcctgctctgcgaacgcaagaagaa 500
            |   || ||| ||||||||| |||| || ||||||||||||||||| || |||| |||||
Sbjct: 1504 attttgtaacgtgtgaattcacccaattacctccatcctgctctgcaaaagcaataagaa 1445

                                                                      
Query: 501  gaggggagtacagttcctgaccaaatgtacgacgccacctagccccgtcaccttgtgg 558
            |||||||||| | |||||| |||||||| || ||||||||||| || |||||||||||
Sbjct: 1444 gaggggagtatatttcctggccaaatgtccgccgccacctagctccttcaccttgtgg 1387
to top
>dbj|AK098929.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013020C01, full
            insert sequence
          Length = 3367

 Score =  353 bits (178), Expect = 4e-94
 Identities = 403/478 (84%)
 Strand = Plus / Minus

                                                                        
Query: 81   tgatgacgaatgtgcggatctccatgggcgccagctcaacgacgagcttggaggggtcca 140
            |||||| ||||||||| |||||||||||  |||| ||||||||||||||||| || || |
Sbjct: 3108 tgatgaggaatgtgcgtatctccatggggcccagatcaacgacgagcttggaaggatcta 3049

                                                                        
Query: 141  cgggtcctccacgggccacattttcttttggtggaggccctgccaccttccatttcagcc 200
            |||| ||||| ||| | |  ||||| |  |  ||||| ||| |||||||||| |||||||
Sbjct: 3048 cggggcctccccggacgatcttttcatcagcaggagggccttccaccttccacttcagcc 2989

                                                                        
Query: 201  tcttcttctccatggcggcgcgctcttggttcgctgataggcttgtttcaattatcttgc 260
            |||| ||||||||||| |  || ||||||||||||||||||||||| ||||  |||||| 
Sbjct: 2988 tctttttctccatggctgaacgttcttggttcgctgataggcttgtctcaacaatcttga 2929

                                                                        
Query: 261  cgacctttttatctgggaataccctcttgaggtcgacactcgccagagctgagagatcct 320
            | | ||| || ||||| ||||| ||||| |||||||| || || |||||||| |||||||
Sbjct: 2928 caatcttcttgtctggaaatactctcttcaggtcgacgctagctagagctgaaagatcct 2869

                                                                        
Query: 321  tatgctctccagcctcgtataggtgagccaaccgaaggagaacacttccatcttcaagtt 380
            | ||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||||
Sbjct: 2868 tgtgctctccagcctcgtataggtgagccaaccgaagaagaacagttccgtcttcaagtt 2809

                                                                        
Query: 381  cctcaagcgtaagcaacgcgacattttcaggaagactgtaagttggatccattgcagaga 440
            ||| ||| |||||||| || ||||| ||||| |  ||||| |  ||||||||||||||||
Sbjct: 2808 cctgaagagtaagcaatgcaacattatcaggcaagctgtaggccggatccattgcagaga 2749

                                                                        
Query: 441  aagatgaaacatgtgaattcgcccagttgcctccatcctgctctgcgaacgcaagaagaa 500
            |   || ||| ||||||||| |||| || ||||||||||||||||| || |||| |||||
Sbjct: 2748 attttgtaacgtgtgaattcacccaattacctccatcctgctctgcaaaagcaataagaa 2689

                                                                      
Query: 501  gaggggagtacagttcctgaccaaatgtacgacgccacctagccccgtcaccttgtgg 558
            |||||||||| | |||||| |||||||| || ||||||||||| || |||||||||||
Sbjct: 2688 gaggggagtatatttcctggccaaatgtccgccgccacctagctccttcaccttgtgg 2631
to top
>dbj|AK068415.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013151H23, full
            insert sequence
          Length = 3413

 Score =  353 bits (178), Expect = 4e-94
 Identities = 403/478 (84%)
 Strand = Plus / Minus

                                                                        
Query: 81   tgatgacgaatgtgcggatctccatgggcgccagctcaacgacgagcttggaggggtcca 140
            |||||| ||||||||| |||||||||||  |||| ||||||||||||||||| || || |
Sbjct: 3154 tgatgaggaatgtgcgtatctccatggggcccagatcaacgacgagcttggaaggatcta 3095

                                                                        
Query: 141  cgggtcctccacgggccacattttcttttggtggaggccctgccaccttccatttcagcc 200
            |||| ||||| ||| | |  ||||| |  |  ||||| ||| |||||||||| |||||||
Sbjct: 3094 cggggcctccccggacgatcttttcatcagcaggagggccttccaccttccacttcagcc 3035

                                                                        
Query: 201  tcttcttctccatggcggcgcgctcttggttcgctgataggcttgtttcaattatcttgc 260
            |||| ||||||||||| |  || ||||||||||||||||||||||| ||||  |||||| 
Sbjct: 3034 tctttttctccatggctgaacgttcttggttcgctgataggcttgtctcaacaatcttga 2975

                                                                        
Query: 261  cgacctttttatctgggaataccctcttgaggtcgacactcgccagagctgagagatcct 320
            | | ||| || ||||| ||||| ||||| |||||||| || || |||||||| |||||||
Sbjct: 2974 caatcttcttgtctggaaatactctcttcaggtcgacgctagctagagctgaaagatcct 2915

                                                                        
Query: 321  tatgctctccagcctcgtataggtgagccaaccgaaggagaacacttccatcttcaagtt 380
            | ||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||||
Sbjct: 2914 tgtgctctccagcctcgtataggtgagccaaccgaagaagaacagttccgtcttcaagtt 2855

                                                                        
Query: 381  cctcaagcgtaagcaacgcgacattttcaggaagactgtaagttggatccattgcagaga 440
            ||| ||| |||||||| || ||||| ||||| |  ||||| |  ||||||||||||||||
Sbjct: 2854 cctgaagagtaagcaatgcaacattatcaggcaagctgtaggccggatccattgcagaga 2795

                                                                        
Query: 441  aagatgaaacatgtgaattcgcccagttgcctccatcctgctctgcgaacgcaagaagaa 500
            |   || ||| ||||||||| |||| || ||||||||||||||||| || |||| |||||
Sbjct: 2794 attttgtaacgtgtgaattcacccaattacctccatcctgctctgcaaaagcaataagaa 2735

                                                                      
Query: 501  gaggggagtacagttcctgaccaaatgtacgacgccacctagccccgtcaccttgtgg 558
            |||||||||| | |||||| |||||||| || ||||||||||| || |||||||||||
Sbjct: 2734 gaggggagtatatttcctggccaaatgtccgccgccacctagctccttcaccttgtgg 2677
to top
>gb|AY105839.1| Zea mays PCO061004 mRNA sequence
          Length = 1624

 Score =  278 bits (140), Expect = 2e-71
 Identities = 317/376 (84%)
 Strand = Plus / Minus

                                                                        
Query: 186  ccttccatttcagcctcttcttctccatggcggcgcgctcttggttcgctgataggcttg 245
            ||||||||||||  | ||||||||||||||| ||||| |||||||| || |||| |||||
Sbjct: 1202 ccttccatttcaaacgcttcttctccatggctgcgcgttcttggtttgccgataagcttg 1143

                                                                        
Query: 246  tttcaattatcttgccgacctttttatctgggaataccctcttgaggtcgacactcgcca 305
            | || || | |||||| | ||| || || ||||| || ||||||||||||| |||||| |
Sbjct: 1142 tctcgatgaccttgccaatcttcttctccgggaacactctcttgaggtcgatactcgcta 1083

                                                                        
Query: 306  gagctgagagatccttatgctctccagcctcgtataggtgagccaaccgaaggagaacac 365
             ||  || |||||||| | ||| || ||||| ||||| ||||| ||||||||||||||||
Sbjct: 1082 aagacgaaagatccttgtcctccccggcctcatatagatgagcaaaccgaaggagaacac 1023

                                                                        
Query: 366  ttccatcttcaagttcctcaagcgtaagcaacgcgacattttcaggaagactgtaagttg 425
            ||||||||||||| |||| ||| |||||||  || ||||| ||||| |  ||||||||||
Sbjct: 1022 ttccatcttcaagctcctgaagggtaagcattgcaacattatcaggcaagctgtaagttg 963

                                                                        
Query: 426  gatccattgcagagaaagatgaaacatgtgaattcgcccagttgcctccatcctgctctg 485
             |||||| ||||||||   || ||||||||||||||||||||||||||||||||||||||
Sbjct: 962  aatccatcgcagagaattttgcaacatgtgaattcgcccagttgcctccatcctgctctg 903

                                                                        
Query: 486  cgaacgcaagaagaagaggggagtacagttcctgaccaaatgtacgacgccacctagccc 545
             ||| |||||||| ||||||||||| | |||||| |||||||| |||||||||| ||| |
Sbjct: 902  tgaaagcaagaaggagaggggagtatatttcctggccaaatgtccgacgccaccgagctc 843

                            
Query: 546  cgtcaccttgtgggtc 561
            | || |||||||||||
Sbjct: 842  cttctccttgtgggtc 827



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 49/53 (92%)
 Strand = Plus / Minus

                                                                 
Query: 77   aagctgatgacgaatgtgcggatctccatgggcgccagctcaacgacgagctt 129
            ||||||| || |||||||||||||||||| ||| |||||||||||||||||||
Sbjct: 1311 aagctgacgatgaatgtgcggatctccattggccccagctcaacgacgagctt 1259
to top
>gb|AC134926.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0056I10,
              complete sequence
          Length = 158833

 Score =  117 bits (59), Expect = 4e-23
 Identities = 143/171 (83%)
 Strand = Plus / Minus

                                                                          
Query: 81     tgatgacgaatgtgcggatctccatgggcgccagctcaacgacgagcttggaggggtcca 140
              |||||| ||||||||| |||||||||||  |||| ||||||||||||||||| || || |
Sbjct: 136783 tgatgaggaatgtgcgtatctccatggggcccagatcaacgacgagcttggaaggatcta 136724

                                                                          
Query: 141    cgggtcctccacgggccacattttcttttggtggaggccctgccaccttccatttcagcc 200
              |||| ||||| ||| | |  ||||| |  |  ||||| ||| |||||||||| |||||||
Sbjct: 136723 cggggcctccccggacgatcttttcatcagcaggagggccttccaccttccacttcagcc 136664

                                                                 
Query: 201    tcttcttctccatggcggcgcgctcttggttcgctgataggcttgtttcaa 251
              |||| ||||||||||| |  || ||||||||||||||||||||||| ||||
Sbjct: 136663 tctttttctccatggctgaacgttcttggttcgctgataggcttgtctcaa 136613



 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 72/82 (87%)
 Strand = Plus / Minus

                                                                          
Query: 477    cctgctctgcgaacgcaagaagaagaggggagtacagttcctgaccaaatgtacgacgcc 536
              |||||||||| || |||| ||||||||||||||| | |||||| |||||||| || ||||
Sbjct: 135722 cctgctctgcaaaagcaataagaagaggggagtatatttcctggccaaatgtccgccgcc 135663

                                    
Query: 537    acctagccccgtcaccttgtgg 558
              ||||||| || |||||||||||
Sbjct: 135662 acctagctccttcaccttgtgg 135641



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 48/51 (94%)
 Strand = Plus / Minus

                                                                 
Query: 333    cctcgtataggtgagccaaccgaaggagaacacttccatcttcaagttcct 383
              ||||||||||||||||||||||||| |||||| |||| |||||||||||||
Sbjct: 136353 cctcgtataggtgagccaaccgaagaagaacagttccgtcttcaagttcct 136303



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 63/73 (86%)
 Strand = Plus / Minus

                                                                          
Query: 263    acctttttatctgggaataccctcttgaggtcgacactcgccagagctgagagatcctta 322
              ||||| || ||||| ||||| ||||| |||||||| || || |||||||| |||||||| 
Sbjct: 136510 accttcttgtctggaaatactctcttcaggtcgacgctagctagagctgaaagatccttg 136451

                           
Query: 323    tgctctccagcct 335
              |||||||||||||
Sbjct: 136450 tgctctccagcct 136438



 Score = 48.1 bits (24), Expect = 0.031
 Identities = 48/56 (85%)
 Strand = Plus / Minus

                                                                      
Query: 425    ggatccattgcagagaaagatgaaacatgtgaattcgcccagttgcctccatcctg 480
              |||||||||||||||||   || ||| ||||||||| |||| || |||||||||||
Sbjct: 135853 ggatccattgcagagaattttgtaacgtgtgaattcacccaattacctccatcctg 135798
to top
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  117 bits (59), Expect = 4e-23
 Identities = 143/171 (83%)
 Strand = Plus / Minus

                                                                            
Query: 81       tgatgacgaatgtgcggatctccatgggcgccagctcaacgacgagcttggaggggtcca 140
                |||||| ||||||||| |||||||||||  |||| ||||||||||||||||| || || |
Sbjct: 18401418 tgatgaggaatgtgcgtatctccatggggcccagatcaacgacgagcttggaaggatcta 18401359

                                                                            
Query: 141      cgggtcctccacgggccacattttcttttggtggaggccctgccaccttccatttcagcc 200
                |||| ||||| ||| | |  ||||| |  |  ||||| ||| |||||||||| |||||||
Sbjct: 18401358 cggggcctccccggacgatcttttcatcagcaggagggccttccaccttccacttcagcc 18401299

                                                                   
Query: 201      tcttcttctccatggcggcgcgctcttggttcgctgataggcttgtttcaa 251
                |||| ||||||||||| |  || ||||||||||||||||||||||| ||||
Sbjct: 18401298 tctttttctccatggctgaacgttcttggttcgctgataggcttgtctcaa 18401248



 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 72/82 (87%)
 Strand = Plus / Minus

                                                                            
Query: 477      cctgctctgcgaacgcaagaagaagaggggagtacagttcctgaccaaatgtacgacgcc 536
                |||||||||| || |||| ||||||||||||||| | |||||| |||||||| || ||||
Sbjct: 18400357 cctgctctgcaaaagcaataagaagaggggagtatatttcctggccaaatgtccgccgcc 18400298

                                      
Query: 537      acctagccccgtcaccttgtgg 558
                ||||||| || |||||||||||
Sbjct: 18400297 acctagctccttcaccttgtgg 18400276



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 48/51 (94%)
 Strand = Plus / Minus

                                                                   
Query: 333      cctcgtataggtgagccaaccgaaggagaacacttccatcttcaagttcct 383
                ||||||||||||||||||||||||| |||||| |||| |||||||||||||
Sbjct: 18400988 cctcgtataggtgagccaaccgaagaagaacagttccgtcttcaagttcct 18400938



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 63/73 (86%)
 Strand = Plus / Minus

                                                                            
Query: 263      acctttttatctgggaataccctcttgaggtcgacactcgccagagctgagagatcctta 322
                ||||| || ||||| ||||| ||||| |||||||| || || |||||||| |||||||| 
Sbjct: 18401145 accttcttgtctggaaatactctcttcaggtcgacgctagctagagctgaaagatccttg 18401086

                             
Query: 323      tgctctccagcct 335
                |||||||||||||
Sbjct: 18401085 tgctctccagcct 18401073



 Score = 48.1 bits (24), Expect = 0.031
 Identities = 48/56 (85%)
 Strand = Plus / Minus

                                                                        
Query: 425      ggatccattgcagagaaagatgaaacatgtgaattcgcccagttgcctccatcctg 480
                |||||||||||||||||   || ||| ||||||||| |||| || |||||||||||
Sbjct: 18400488 ggatccattgcagagaattttgtaacgtgtgaattcacccaattacctccatcctg 18400433
to top
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  117 bits (59), Expect = 4e-23
 Identities = 143/171 (83%)
 Strand = Plus / Minus

                                                                            
Query: 81       tgatgacgaatgtgcggatctccatgggcgccagctcaacgacgagcttggaggggtcca 140
                |||||| ||||||||| |||||||||||  |||| ||||||||||||||||| || || |
Sbjct: 18560819 tgatgaggaatgtgcgtatctccatggggcccagatcaacgacgagcttggaaggatcta 18560760

                                                                            
Query: 141      cgggtcctccacgggccacattttcttttggtggaggccctgccaccttccatttcagcc 200
                |||| ||||| ||| | |  ||||| |  |  ||||| ||| |||||||||| |||||||
Sbjct: 18560759 cggggcctccccggacgatcttttcatcagcaggagggccttccaccttccacttcagcc 18560700

                                                                   
Query: 201      tcttcttctccatggcggcgcgctcttggttcgctgataggcttgtttcaa 251
                |||| ||||||||||| |  || ||||||||||||||||||||||| ||||
Sbjct: 18560699 tctttttctccatggctgaacgttcttggttcgctgataggcttgtctcaa 18560649



 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 72/82 (87%)
 Strand = Plus / Minus

                                                                            
Query: 477      cctgctctgcgaacgcaagaagaagaggggagtacagttcctgaccaaatgtacgacgcc 536
                |||||||||| || |||| ||||||||||||||| | |||||| |||||||| || ||||
Sbjct: 18559758 cctgctctgcaaaagcaataagaagaggggagtatatttcctggccaaatgtccgccgcc 18559699

                                      
Query: 537      acctagccccgtcaccttgtgg 558
                ||||||| || |||||||||||
Sbjct: 18559698 acctagctccttcaccttgtgg 18559677



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 48/51 (94%)
 Strand = Plus / Minus

                                                                   
Query: 333      cctcgtataggtgagccaaccgaaggagaacacttccatcttcaagttcct 383
                ||||||||||||||||||||||||| |||||| |||| |||||||||||||
Sbjct: 18560389 cctcgtataggtgagccaaccgaagaagaacagttccgtcttcaagttcct 18560339



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 63/73 (86%)
 Strand = Plus / Minus

                                                                            
Query: 263      acctttttatctgggaataccctcttgaggtcgacactcgccagagctgagagatcctta 322
                ||||| || ||||| ||||| ||||| |||||||| || || |||||||| |||||||| 
Sbjct: 18560546 accttcttgtctggaaatactctcttcaggtcgacgctagctagagctgaaagatccttg 18560487

                             
Query: 323      tgctctccagcct 335
                |||||||||||||
Sbjct: 18560486 tgctctccagcct 18560474



 Score = 48.1 bits (24), Expect = 0.031
 Identities = 48/56 (85%)
 Strand = Plus / Minus

                                                                        
Query: 425      ggatccattgcagagaaagatgaaacatgtgaattcgcccagttgcctccatcctg 480
                |||||||||||||||||   || ||| ||||||||| |||| || |||||||||||
Sbjct: 18559889 ggatccattgcagagaattttgtaacgtgtgaattcacccaattacctccatcctg 18559834
to top
>ref|XM_604879.2| PREDICTED: Bos taurus similar to Olfactory receptor 7G1 (Olfactory
           receptor 19-15) (OR19-15) (LOC526508), mRNA
          Length = 936

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 186 ccttccatttcagcctcttcttctccatg 214
           |||||| ||||||||||||||| ||||||
Sbjct: 74  ccttccttttcagcctcttcttgtccatg 102
to top
>gb|AC113597.12| Mus musculus chromosome 1, clone RP23-375F6, complete sequence
          Length = 224996

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 355    aaggagaacacttccatcttc 375
              |||||||||||||||||||||
Sbjct: 132844 aaggagaacacttccatcttc 132864
to top
>gb|AC160984.3| Mus musculus BAC clone RP23-260C12 from chromosome 14, complete sequence
          Length = 206110

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 175    aggccctgccaccttccattt 195
              |||||||||||||||||||||
Sbjct: 128207 aggccctgccaccttccattt 128227
to top
>gb|AC093545.1| Homo sapiens chromosome X clone RP5-1015P16A, complete sequence
          Length = 174725

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 190   ccatttcagcctcttcttctc 210
             |||||||||||||||||||||
Sbjct: 82539 ccatttcagcctcttcttctc 82559
to top
>gb|AC096716.3| Homo sapiens BAC clone RP11-8L2 from 4, complete sequence
          Length = 145634

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 192   atttcagcctcttcttctccatggc 216
             |||||||||||||||| ||||||||
Sbjct: 78470 atttcagcctcttcttttccatggc 78494
to top
>gb|AC091167.19| Homo sapiens chromosome 15, clone RP11-697E2, complete sequence
          Length = 202381

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 183    ccaccttccatttcagcctct 203
              |||||||||||||||||||||
Sbjct: 186246 ccaccttccatttcagcctct 186266
to top
>gb|AC154333.2| Mus musculus BAC clone RP24-496M21 from 14, complete sequence
          Length = 163565

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 175    aggccctgccaccttccattt 195
              |||||||||||||||||||||
Sbjct: 145793 aggccctgccaccttccattt 145773
to top
>gb|AC007486.1|AC007486 Homo sapiens clone DJ1015P16A, complete sequence
          Length = 174725

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 190   ccatttcagcctcttcttctc 210
             |||||||||||||||||||||
Sbjct: 82539 ccatttcagcctcttcttctc 82559
to top
>gb|AY485643.1| Hordeum vulgare subsp. vulgare BAC 615K1, complete sequence
          Length = 114996

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 469    gcctccatcctgctctgcga 488
              ||||||||||||||||||||
Sbjct: 107932 gcctccatcctgctctgcga 107913
to top
>ref|XM_608267.2| PREDICTED: Bos taurus hypothetical LOC529808 (LOC529808), mRNA
          Length = 1779

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 199 cctcttcttctccatggcgg 218
           ||||||||||||||||||||
Sbjct: 618 cctcttcttctccatggcgg 637
to top
>gb|AC154396.11| Mus musculus chromosome 3, clone RP24-254D5, complete sequence
          Length = 153799

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 434   gcagagaaagatgaaacatg 453
             ||||||||||||||||||||
Sbjct: 26136 gcagagaaagatgaaacatg 26117
to top
>gb|AC101889.6| Mus musculus chromosome 3, clone RP23-465M13, complete sequence
          Length = 186900

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 434   gcagagaaagatgaaacatg 453
             ||||||||||||||||||||
Sbjct: 20554 gcagagaaagatgaaacatg 20573
to top
>emb|AL442089.1|HSM802822 Homo sapiens mRNA; cDNA DKFZp761E2216 (from clone DKFZp761E2216)
          Length = 3780

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 467 ttgcctccatcctgctctgc 486
           ||||||||||||||||||||
Sbjct: 167 ttgcctccatcctgctctgc 186
to top
>emb|AL845158.5| Mouse DNA sequence from clone RP23-147E6 on chromosome 4 Contains a
              component of oligomeric golgi complex 1 (Cog5) pseudogene
              and part of the Ptprd gene for receptor type protein
              tyrosine phosphatase D, complete sequence
          Length = 198523

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 158    acattttcttttggtggagg 177
              ||||||||||||||||||||
Sbjct: 129142 acattttcttttggtggagg 129161
to top
>gb|AC010973.6| Homo sapiens BAC clone RP11-148K1 from 7, complete sequence
          Length = 222605

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 467   ttgcctccatcctgctctgc 486
             ||||||||||||||||||||
Sbjct: 65961 ttgcctccatcctgctctgc 65942
to top
>gb|AC149135.2| Medicago truncatula chromosome 2 BAC clone mth2-31g23, complete
             sequence
          Length = 113812

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 74    gtgaagctgatgacgaatgt 93
             ||||||||||||||||||||
Sbjct: 43343 gtgaagctgatgacgaatgt 43324
to top
>gb|AC080094.5| Homo sapiens BAC clone RP11-1007E2 from 2, complete sequence
          Length = 134001

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 194   ttcagcctcttcttctccat 213
             ||||||||||||||||||||
Sbjct: 17262 ttcagcctcttcttctccat 17281
to top
>gb|AC134903.4| Mus musculus BAC clone RP23-329A21 from chromosome 5, complete sequence
          Length = 198368

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 308   gctgagagatccttatgctc 327
             ||||||||||||||||||||
Sbjct: 64301 gctgagagatccttatgctc 64320
to top
>gb|AC133097.3| Mus musculus BAC clone RP23-287O2 from 1, complete sequence
          Length = 199276

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 193   tttcagcctcttcttctcca 212
             ||||||||||||||||||||
Sbjct: 75866 tttcagcctcttcttctcca 75885
to top
>gb|AC160723.2| Mus musculus BAC clone RP24-499G15 from chromosome 5, complete sequence
          Length = 173212

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 308    gctgagagatccttatgctc 327
              ||||||||||||||||||||
Sbjct: 163159 gctgagagatccttatgctc 163140


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,213,131
Number of Sequences: 3902068
Number of extensions: 5213131
Number of successful extensions: 105862
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 105739
Number of HSP's gapped (non-prelim): 123
length of query: 561
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 538
effective length of database: 17,143,297,704
effective search space: 9223094164752
effective search space used: 9223094164752
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top