ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags8p04 |
|---|---|
| Clone Library Name | barley_pub |
>PSD8_DICDI (P02889) Probable 26S proteasome non-ATPase regulatory subunit 8| (Vegetative cell protein X) (M4 protein) Length = 263 Score = 115 bits (288), Expect = 1e-25 Identities = 59/145 (40%), Positives = 96/145 (66%) Frame = -3 Query: 610 AEFHTELXLLPAKALENACIKHGVELEQSFMEGAYNRVLSARQTAPHETYVYFMDLLAKT 431 +EFH+E+ L+ L+N+ IK + +E+S EG+YN+++ +R P E Y F+D+LA + Sbjct: 123 SEFHSEIELIEFNNLDNSFIKFPLLVEKSITEGSYNKIIQSRSGVPSEYYQVFLDILADS 182 Query: 430 VRDEIAGCSEKGYDYLSISDAKQMFMFSSDKELQQYIAEEHPEWDVKDGSVLFQKAKESQ 251 ++++IA CSEK + LS+ DA+++ +F+ + + QQYI E + W V+ G V+ Q Sbjct: 183 IKEDIANCSEKSFKTLSLKDAEKVLLFNDNNQFQQYIKERN--WKVQ-GDVI-QFGNNDN 238 Query: 250 PCKEIPAAPVINQTLGYARELERIV 176 EIP+ +I+QTL YA+ELERIV Sbjct: 239 QTVEIPSLQLIHQTLHYAKELERIV 263
>PSD8_MOUSE (Q9CX56) 26S proteasome non-ATPase regulatory subunit 8 (26S| proteasome regulatory subunit S14) Length = 257 Score = 111 bits (277), Expect = 2e-24 Identities = 60/148 (40%), Positives = 90/148 (60%), Gaps = 2/148 (1%) Frame = -3 Query: 613 IAEFHTELXLLPAKALE-NACIKHGVELEQSFMEGAYNRVLSARQTAPHETYVYFMDLLA 437 +AEFHTEL LPAK ++ N IKH V LEQ MEG+YN+V A+ P E+Y +F+D+L Sbjct: 112 VAEFHTELERLPAKDIQTNVYIKHPVSLEQYLMEGSYNKVFLAKGNIPAESYTFFIDILL 171 Query: 436 KTVRDEIAGCSEKGYDYLSISDAKQMFMFSSDKELQQYIAEEHPEWDVKDGSVLFQKAKE 257 T+RDEIAGC EK Y+ + ++A ++ FS+ K++ Y + W + + +++ Sbjct: 172 DTIRDEIAGCIEKAYEKILFAEATRILFFSTPKKMTDYAKKR--GWVLGPNNYYSFASQQ 229 Query: 256 SQP-CKEIPAAPVINQTLGYARELERIV 176 +P IP + Q + YAR+LE IV Sbjct: 230 QKPEDSTIPFTELAKQVIEYARQLEMIV 257
>PSD8_PONPY (Q5RE15) 26S proteasome non-ATPase regulatory subunit 8| Length = 257 Score = 110 bits (276), Expect = 2e-24 Identities = 59/148 (39%), Positives = 91/148 (61%), Gaps = 2/148 (1%) Frame = -3 Query: 613 IAEFHTELXLLPAKALE-NACIKHGVELEQSFMEGAYNRVLSARQTAPHETYVYFMDLLA 437 +AEFHTEL LPAK ++ N IKH V LEQ MEG+YN+V A+ P E+Y +F+D+L Sbjct: 112 VAEFHTELERLPAKDIQTNVYIKHPVSLEQYLMEGSYNKVFLAKGNIPAESYAFFIDILL 171 Query: 436 KTVRDEIAGCSEKGYDYLSISDAKQMFMFSSDKELQQYIAEEHPEWDVKDGSVLFQKAKE 257 T+RDEIAGC EK Y+ + ++A ++ F++ K++ Y + W + + +++ Sbjct: 172 DTIRDEIAGCIEKAYEKILFTEATRILFFNTPKKMTDYAKKR--GWVLGPNNYYSFASQQ 229 Query: 256 SQP-CKEIPAAPVINQTLGYARELERIV 176 +P IP+ + Q + YAR+LE IV Sbjct: 230 QKPEDTTIPSTELAKQVIEYARQLEMIV 257
>PSD8_HUMAN (P48556) 26S proteasome non-ATPase regulatory subunit 8 (26S| proteasome regulatory subunit S14) (p31) Length = 257 Score = 110 bits (276), Expect = 2e-24 Identities = 59/148 (39%), Positives = 91/148 (61%), Gaps = 2/148 (1%) Frame = -3 Query: 613 IAEFHTELXLLPAKALE-NACIKHGVELEQSFMEGAYNRVLSARQTAPHETYVYFMDLLA 437 +AEFHTEL LPAK ++ N IKH V LEQ MEG+YN+V A+ P E+Y +F+D+L Sbjct: 112 VAEFHTELERLPAKDIQTNVYIKHPVSLEQYLMEGSYNKVFLAKGNIPAESYTFFIDILL 171 Query: 436 KTVRDEIAGCSEKGYDYLSISDAKQMFMFSSDKELQQYIAEEHPEWDVKDGSVLFQKAKE 257 T+RDEIAGC EK Y+ + ++A ++ F++ K++ Y + W + + +++ Sbjct: 172 DTIRDEIAGCIEKAYEKILFTEATRILFFNTPKKMTDYAKKR--GWVLGPNNYYSFASQQ 229 Query: 256 SQP-CKEIPAAPVINQTLGYARELERIV 176 +P IP+ + Q + YAR+LE IV Sbjct: 230 QKPEDTTIPSTELAKQVIEYARQLEMIV 257
>PSD8_CAEEL (Q23449) 26S proteasome non-ATPase regulatory subunit 8 (26S| proteasome regulatory subunit rpn-12) Length = 250 Score = 83.6 bits (205), Expect = 4e-16 Identities = 48/147 (32%), Positives = 79/147 (53%), Gaps = 1/147 (0%) Frame = -3 Query: 613 IAEFHTELXLLPAKA-LENACIKHGVELEQSFMEGAYNRVLSARQTAPHETYVYFMDLLA 437 +++FH L +P K NA I V +EQS MEGAYN+V+ + P Y F+ ++ Sbjct: 106 LSDFHMLLEQIPQKEQTSNAYISTPVRIEQSLMEGAYNKVVLTEKNIPSPFYTIFIRIML 165 Query: 436 KTVRDEIAGCSEKGYDYLSISDAKQMFMFSSDKELQQYIAEEHPEWDVKDGSVLFQKAKE 257 T+R EIA EK + L+ DA M +F +D++++++ E +W + +F+ Sbjct: 166 DTIRREIATSIEKSFKVLTAKDATVMLLFDNDEQMKKFGQER--KWHLDGERYVFEIEVA 223 Query: 256 SQPCKEIPAAPVINQTLGYARELERIV 176 + + V QTL YA++LE+IV Sbjct: 224 QEKPVNLDTVRVATQTLFYAKQLEQIV 250
>RPN12_SCHPO (P50524) 26S proteasome regulatory subunit rpn12| Length = 270 Score = 83.2 bits (204), Expect = 6e-16 Identities = 55/165 (33%), Positives = 84/165 (50%), Gaps = 19/165 (11%) Frame = -3 Query: 613 IAEFHTELXLLPAKAL--ENACIKHGVELEQSFMEGAYNRVLSARQTAPHETYVYFMDLL 440 IAEFHT L +P K+L + ++ + LEQ+ MEGA+++V S ++ + YFM ++ Sbjct: 108 IAEFHTALESVPDKSLFERDPYVEWVISLEQNVMEGAFDKVASMIRSCNFPEFSYFMKIV 167 Query: 439 AKTVRDEIAGCSEKGYDYLSISDAKQMFMFSSDKELQQYIAEEHPEWDVKDGSVLFQKAK 260 VR+EIA C+EK Y + +S+A + + KE ++ +AEE WD++DG + F K Sbjct: 168 MSMVRNEIATCAEKVYSEIPLSNATSLLYLENTKETEK-LAEER-GWDIRDGVIYFPKEA 225 Query: 259 -----------------ESQPCKEIPAAPVINQTLGYARELERIV 176 E P I Q L Y ELE+IV Sbjct: 226 NALETEDGMLIDEEDELELPPTASKHTISSIRQLLSYTSELEQIV 270
>RPN12_YEAST (P32496) 26S proteasome regulatory subunit RPN12 (Nuclear integrity| protein 1) Length = 274 Score = 64.3 bits (155), Expect = 3e-10 Identities = 44/156 (28%), Positives = 82/156 (52%), Gaps = 12/156 (7%) Frame = -3 Query: 607 EFHTELXLLPA--KALEN-ACIKHGVELEQSFMEGAYNRVLSARQTAPHETYVY--FMDL 443 +FH+EL L K LE+ + + + ++L++ MEG+Y + Q+ + F D+ Sbjct: 121 KFHSELQYLDKHIKNLEDDSLLSYPIKLDRWLMEGSYQKAWDLLQSGSQNISEFDSFTDI 180 Query: 442 LAKTVRDEIAGCSEKGYDYLSISDAKQMFMFSSDKELQQYIAEEHPEWDVKDGSVLF--- 272 L +RDEIA +E YD+L +S+ K + F+++KE +++ E + W + + V F Sbjct: 181 LKSAIRDEIAKNTELSYDFLPLSNIKALLFFNNEKETEKFALERN--WPIVNSKVYFNNQ 238 Query: 271 --QKA--KESQPCKEIPAAPVINQTLGYARELERIV 176 +KA ++ +E +I + + YA +E IV Sbjct: 239 SKEKADYEDEMMHEEDQKTNIIEKAMDYAISIENIV 274
>TCO2_PONPY (Q5REL7) Transcobalamin-2 precursor (Transcobalamin II) (TCII) (TC| II) Length = 427 Score = 33.1 bits (74), Expect = 0.66 Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 5/62 (8%) Frame = -3 Query: 583 LPAKALENACIKHGVELEQSFMEGAYNRVLSARQTAP---HETYV--YFMDLLAKTVRDE 419 +P L AC+K V L S +GA+ L Q P H+TY+ F D LA V E Sbjct: 258 MPGAELGTACLKARVALFASLQDGAFQNALMISQLLPVLNHKTYIDLIFPDCLAPRVMLE 317 Query: 418 IA 413 A Sbjct: 318 PA 319
>TCO2_HUMAN (P20062) Transcobalamin-2 precursor (Transcobalamin II) (TCII) (TC| II) Length = 427 Score = 33.1 bits (74), Expect = 0.66 Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 5/62 (8%) Frame = -3 Query: 583 LPAKALENACIKHGVELEQSFMEGAYNRVLSARQTAP---HETYV--YFMDLLAKTVRDE 419 +P L AC+K V L S +GA+ L Q P H+TY+ F D LA V E Sbjct: 258 MPGAELGTACLKARVALLASLQDGAFQNALMISQLLPVLNHKTYIDLIFPDCLAPRVMLE 317 Query: 418 IA 413 A Sbjct: 318 PA 319
>BLS_STRCL (Q9R8E3) Carboxyethyl-arginine beta-lactam-synthase (EC 6.3.3.4)| (Beta-lactam synthetase) Length = 513 Score = 32.3 bits (72), Expect = 1.1 Identities = 16/37 (43%), Positives = 23/37 (62%) Frame = -2 Query: 353 VQLRQGTAAVHRRGTPRVGCQGRQRLVPEGEGVAALQ 243 + L GTA HR TP + +R++PEGE VAA++ Sbjct: 195 IDLGSGTAVTHRTWTPGLS----RRILPEGEAVAAVR 227
>POP1_CAEEL (Q10666) Protein pop-1 (Posterior pharynx defect protein 1)| Length = 438 Score = 31.2 bits (69), Expect = 2.5 Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 11/93 (11%) Frame = -3 Query: 475 PHETYVYFMDLLAKTVRDEIAG-----------CSEKGYDYLSISDAKQMFMFSSDKELQ 329 P +V+FM K + +EI ++ +D AK M DKE Sbjct: 195 PLNAFVWFMKENRKALLEEIGNNEKQSAELNKELGKRWHDLSKEEQAKYFEMAKKDKETH 254 Query: 328 QYIAEEHPEWDVKDGSVLFQKAKESQPCKEIPA 230 + E +PEW ++ + +K + + K IP+ Sbjct: 255 K---ERYPEWSARENYAVNKKKTKKRRDKSIPS 284
>MK14A_CYPCA (Q90336) Mitogen-activated protein kinase 14a (EC 2.7.11.24)| (Mitogen-activated protein kinase p38a) (MAP kinase p38a) (cp38a) Length = 361 Score = 30.8 bits (68), Expect = 3.3 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%) Frame = -1 Query: 123 GLLDC--PVTQLYYFGSIVCFTHCFQSAVDNTVKCQK 19 GLLD P T L F + TH + ++N VKCQK Sbjct: 86 GLLDVFTPATSLEEFNDVYLVTHLMGADLNNIVKCQK 122
>MK14A_BRARE (Q9DGE2) Mitogen-activated protein kinase 14a (EC 2.7.11.24)| (Mitogen-activated protein kinase p38a) (MAP kinase p38a) (zp38a) Length = 361 Score = 30.8 bits (68), Expect = 3.3 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%) Frame = -1 Query: 123 GLLDC--PVTQLYYFGSIVCFTHCFQSAVDNTVKCQK 19 GLLD P T L F + TH + ++N VKCQK Sbjct: 86 GLLDVFTPATSLKEFNDVYLVTHLMGADLNNIVKCQK 122
>MK14B_BRARE (Q9DGE1) Mitogen-activated protein kinase 14b (EC 2.7.11.24)| (Mitogen-activated protein kinase p38b) (MAP kinase p38b) (zp38b) Length = 348 Score = 30.4 bits (67), Expect = 4.3 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%) Frame = -1 Query: 123 GLLDC--PVTQLYYFGSIVCFTHCFQSAVDNTVKCQK 19 GLLD P T L F + TH + ++N VKCQK Sbjct: 86 GLLDVFSPATSLEGFNDVYLVTHLMGADLNNIVKCQK 122
>UVRA_LISMO (Q8Y4F6) UvrABC system protein A (UvrA protein) (Excinuclease ABC| subunit A) Length = 956 Score = 29.6 bits (65), Expect = 7.3 Identities = 17/55 (30%), Positives = 25/55 (45%) Frame = -3 Query: 613 IAEFHTELXLLPAKALENACIKHGVELEQSFMEGAYNRVLSARQTAPHETYVYFM 449 + E H L LL A+ C HG+E+ +E +RVL P +T + M Sbjct: 103 VTEIHDYLRLLYARVGHPVCPNHGIEITSQTIEQMVDRVLE----YPEKTRIQIM 153
>UVRA_LISMF (Q71WU0) UvrABC system protein A (UvrA protein) (Excinuclease ABC| subunit A) Length = 956 Score = 29.6 bits (65), Expect = 7.3 Identities = 17/55 (30%), Positives = 25/55 (45%) Frame = -3 Query: 613 IAEFHTELXLLPAKALENACIKHGVELEQSFMEGAYNRVLSARQTAPHETYVYFM 449 + E H L LL A+ C HG+E+ +E +RVL P +T + M Sbjct: 103 VTEIHDYLRLLYARVGHPVCPNHGIEITSQTIEQMVDRVLE----YPEKTRIQIM 153
>UVRA_LISIN (Q928A5) UvrABC system protein A (UvrA protein) (Excinuclease ABC| subunit A) Length = 956 Score = 29.6 bits (65), Expect = 7.3 Identities = 17/55 (30%), Positives = 25/55 (45%) Frame = -3 Query: 613 IAEFHTELXLLPAKALENACIKHGVELEQSFMEGAYNRVLSARQTAPHETYVYFM 449 + E H L LL A+ C HG+E+ +E +RVL P +T + M Sbjct: 103 VTEIHDYLRLLYARVGHPVCPNHGIEITSQTIEQMVDRVLE----YPEKTRIQIM 153
>MK14B_CYPCA (Q9I958) Mitogen-activated protein kinase 14b (EC 2.7.11.24)| (Mitogen-activated protein kinase p38b) (MAP kinase p38b) (cp38b) Length = 361 Score = 29.6 bits (65), Expect = 7.3 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%) Frame = -1 Query: 123 GLLDC--PVTQLYYFGSIVCFTHCFQSAVDNTVKCQK 19 GLLD P T L F + TH + ++N VKCQK Sbjct: 86 GLLDAFSPATCLAGFNDVYLVTHLMGADLNNIVKCQK 122
>FTHS_RHILO (Q98HQ4) Formate--tetrahydrofolate ligase (EC 6.3.4.3)| (Formyltetrahydrofolate synthetase) (FHS) (FTHFS) Length = 559 Score = 29.6 bits (65), Expect = 7.3 Identities = 13/36 (36%), Positives = 21/36 (58%) Frame = -3 Query: 436 KTVRDEIAGCSEKGYDYLSISDAKQMFMFSSDKELQ 329 K+VRD++ + GY L + AK + FS+D L+ Sbjct: 468 KSVRDQLHAWEQAGYGNLPVCMAKTQYSFSTDPNLR 503
>LEA1_APHAV (Q95V77) Late embryogenesis abundant protein 1 (Aavlea1)| Length = 143 Score = 29.6 bits (65), Expect = 7.3 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 10/65 (15%) Frame = -3 Query: 550 KHGVELEQSFMEGAYNRVLSARQT----------APHETYVYFMDLLAKTVRDEIAGCSE 401 + G + EQ +ME A +V++A ++ A E F D +T+RD E Sbjct: 9 RQGEQQEQGYMEAAKEKVVNAWESTKETLSSTAQAAAEKTAEFRDSAGETIRDLTGQAQE 68 Query: 400 KGYDY 386 KG ++ Sbjct: 69 KGQEF 73
>Y787_SYNY3 (Q55946) Hypothetical protein sll0787| Length = 322 Score = 29.3 bits (64), Expect = 9.6 Identities = 11/36 (30%), Positives = 22/36 (61%) Frame = -2 Query: 362 DVYVQLRQGTAAVHRRGTPRVGCQGRQRLVPEGEGV 255 D+ ++L+Q +H++ QG+QRL+ +GE + Sbjct: 4 DLIIELQQTLGILHKQDIQLASRQGQQRLIGDGEAI 39
>TCO2_MOUSE (O88968) Transcobalamin-2 precursor (Transcobalamin II) (TCII) (TC| II) Length = 430 Score = 29.3 bits (64), Expect = 9.6 Identities = 15/43 (34%), Positives = 21/43 (48%) Frame = -3 Query: 568 LENACIKHGVELEQSFMEGAYNRVLSARQTAPHETYVYFMDLL 440 L ACIK G L S +GA+ L Q P + ++DL+ Sbjct: 266 LGTACIKAGTSLLLSLQDGAFQNPLMISQLLPILNHKTYLDLI 308
>CCA1_SCHPO (Q9UTQ0) Probable tRNA nucleotidyltransferase (EC 2.7.7.25) (tRNA| adenylyltransferase) (tRNA CCA-pyrophosphorylase) (CCA-adding enzyme) Length = 500 Score = 29.3 bits (64), Expect = 9.6 Identities = 9/21 (42%), Positives = 15/21 (71%) Frame = -3 Query: 352 FSSDKELQQYIAEEHPEWDVK 290 F + LQ Y+A++HP+W+ K Sbjct: 67 FEFAQHLQSYLAQQHPDWETK 87 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 91,716,477 Number of Sequences: 219361 Number of extensions: 1947618 Number of successful extensions: 5804 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 5579 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5789 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5538924943 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
