ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags8p04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY103818.1| Zea mays PCO124949 mRNA sequence 222 1e-54
2gb|BT016262.1| Zea mays clone Contig95 mRNA sequence 214 3e-52
3ref|XM_477795.1| Oryza sativa (japonica cultivar-group), mRNA 196 6e-47
4dbj|AK101316.1| Oryza sativa (japonica cultivar-group) cDNA clon... 196 6e-47
5dbj|AK061408.1| Oryza sativa (japonica cultivar-group) cDNA clon... 196 6e-47
6dbj|AK061383.1| Oryza sativa (japonica cultivar-group) cDNA clon... 196 6e-47
7dbj|AB037153.1| Oryza sativa (japonica cultivar-group) OsRPN12 m... 196 6e-47
8dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 109 1e-20
9dbj|AP005200.4| Oryza sativa (japonica cultivar-group) genomic D... 109 1e-20
10ref|NM_123569.1| Arabidopsis thaliana peptidase AT5G42040 mRNA, ... 98 4e-17
11gb|AY258413.1| Arabidopsis thaliana 26S proteasome subunit RPN12... 98 4e-17
12dbj|AB017067.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 90 1e-14
13ref|NM_105127.2| Arabidopsis thaliana peptidase AT1G64520 mRNA, ... 54 6e-04
14gb|AY230847.1| Arabidopsis thaliana 26S proteasome subunit RPN12... 54 6e-04
15gb|AY230846.1| Arabidopsis thaliana 26S proteasome subunit RPN12... 54 6e-04
16gb|AY143888.1| Arabidopsis thaliana At1g64520/F1N19_10 mRNA, com... 54 6e-04
17gb|AF410265.1|AF410265 Arabidopsis thaliana At1g64520/F1N19_10 m... 54 6e-04
18gb|AY039857.1| Arabidopsis thaliana At1g64520/F1N19_10 mRNA, com... 54 6e-04
19emb|BX815245.1|CNS0AAGS Arabidopsis thaliana Full-length cDNA Co... 54 6e-04
20gb|AC009519.4|AC009519 Genomic sequence for Arabidopsis thaliana... 54 6e-04
21emb|BX816010.1|CNS0ABWV Arabidopsis thaliana Full-length cDNA Co... 46 0.14
22ref|XM_809423.1| Trypanosoma cruzi strain CL Brener hypothetical... 42 2.1
23ref|XM_816110.1| Trypanosoma cruzi strain CL Brener hypothetical... 42 2.1
24emb|AL590398.9| Human DNA sequence from clone RP11-446G24 on chr... 42 2.1
25dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, c... 42 2.1
26gb|AC087349.17| Homo sapiens chromosome 8, clone RP11-339A23, co... 42 2.1
27gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete... 42 2.1
28gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome 40 8.4
29ref|XM_816106.1| Trypanosoma cruzi strain CL Brener hypothetical... 40 8.4
30ref|XM_809419.1| Trypanosoma cruzi strain CL Brener hypothetical... 40 8.4
31emb|AL590727.5| Human DNA sequence from clone RP11-111D3 on chro... 40 8.4
32gb|AF535436.1| HIV-1 isolate 88USMF880113sg from USA envelope gl... 40 8.4
33gb|CP000282.1| Saccharophagus degradans 2-40, complete genome 40 8.4
34gb|AC182752.1| Gasterosteus aculeatus clone VMRC26-161K14, compl... 40 8.4
35gb|AC135782.4| Homo sapiens chromosome 16 clone CTD-2555A7, comp... 40 8.4
36dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 8.4
37ref|XM_321580.2| Anopheles gambiae str. PEST ENSANGP00000011799 ... 40 8.4
38gb|AC122538.4| Mus musculus BAC clone RP24-548J11 from 16, compl... 40 8.4
39gb|AC122871.4| Mus musculus BAC clone RP23-107P12 from 5, comple... 40 8.4
40dbj|AP006096.1| Lotus japonicus genomic DNA, chromosome 4, clone... 40 8.4 
>gb|AY103818.1| Zea mays PCO124949 mRNA sequence
          Length = 1251

 Score =  222 bits (112), Expect = 1e-54
 Identities = 312/379 (82%)
 Strand = Plus / Minus

                                                                       
Query: 237 atctccttgcagggctgcgactccttcgccttctggaacaagacgctgccgtccttgaca 296
           ||||||||||||||||| |||||||||||||||||||| |||||    |||| ||| |  
Sbjct: 948 atctccttgcagggctgtgactccttcgccttctggaagaagacagcaccgttcttaatc 889

                                                                       
Query: 297 tcccactcggggtgttcctctgcgatgtactgctgcagttccttgtcggagctgaacata 356
           ||||| || ||||| ||||| | ||||||||  ||||| || | ||| || |||||||||
Sbjct: 888 tcccattccgggtgctcctcagtgatgtactcgtgcagatcttggtcagaactgaacata 829

                                                                       
Query: 357 aacatctgcttcgcatcgcttattgacaggtaatcatatcccttctcgctgcacccagct 416
           | ||| ||||| ||||| || |  || ||  ||||||| ||||| |||||||||||||| 
Sbjct: 828 agcatttgctttgcatcactcacagatagagaatcataccccttttcgctgcacccagcg 769

                                                                       
Query: 417 atctcgtctctaaccgttttggcgagaaggtccatgaagtatacgtaggtctcatgcggt 476
           ||||| |||||||| ||||||||||||||||| |||||||| |||||||||||||| || 
Sbjct: 768 atctcatctctaactgttttggcgagaaggtcgatgaagtaaacgtaggtctcatgtggc 709

                                                                       
Query: 477 gcggtttgccgagcgctcagcacacggttgtaggcgccctccataaaggactgctcgagc 536
            | |  ||||||||||| | ||| ||||||||||| |||||||| ||||| ||||| |||
Sbjct: 708 acagcctgccgagcgcttaacactcggttgtaggcaccctccatgaaggattgctcaagc 649

                                                                       
Query: 537 tcaaccccgtgcttgatgcaagcattctccagcgctttggcgggcagaagctncagctca 596
           || ||  | ||||||||||||| || ||| || || ||| | || | ||||| |||||||
Sbjct: 648 tctacagcatgcttgatgcaaggatgctcgagtgccttgacaggtaaaagctccagctca 589

                              
Query: 597 gtgtggaactccgcaattc 615
           ||||||||||| |||||||
Sbjct: 588 gtgtggaactcggcaattc 570
to top
>gb|BT016262.1| Zea mays clone Contig95 mRNA sequence
          Length = 1020

 Score =  214 bits (108), Expect = 3e-52
 Identities = 311/379 (82%)
 Strand = Plus / Minus

                                                                       
Query: 237 atctccttgcagggctgcgactccttcgccttctggaacaagacgctgccgtccttgaca 296
           ||||||||||||||||| || ||||||||||||||||| |||||    |||| ||| |  
Sbjct: 742 atctccttgcagggctgtgattccttcgccttctggaagaagacagcaccgttcttaatc 683

                                                                       
Query: 297 tcccactcggggtgttcctctgcgatgtactgctgcagttccttgtcggagctgaacata 356
           ||||| || ||||| ||||| | ||||||||  ||||| || | ||| || |||||||||
Sbjct: 682 tcccattccgggtgctcctcagtgatgtactcgtgcagatcttggtcagaactgaacata 623

                                                                       
Query: 357 aacatctgcttcgcatcgcttattgacaggtaatcatatcccttctcgctgcacccagct 416
           | ||| ||||| ||||| || |  || ||  ||||||| ||||| |||||||||||||| 
Sbjct: 622 agcatttgctttgcatcactcacagatagagaatcataccccttttcgctgcacccagcg 563

                                                                       
Query: 417 atctcgtctctaaccgttttggcgagaaggtccatgaagtatacgtaggtctcatgcggt 476
           ||||| |||||||| ||||||||||||||||| |||||||| |||||||||||||| || 
Sbjct: 562 atctcatctctaactgttttggcgagaaggtcgatgaagtaaacgtaggtctcatgtggc 503

                                                                       
Query: 477 gcggtttgccgagcgctcagcacacggttgtaggcgccctccataaaggactgctcgagc 536
            | |  ||||||||||| | ||| ||||||||||| |||||||| ||||| ||||| |||
Sbjct: 502 acagcctgccgagcgcttaacactcggttgtaggcaccctccatgaaggattgctcaagc 443

                                                                       
Query: 537 tcaaccccgtgcttgatgcaagcattctccagcgctttggcgggcagaagctncagctca 596
           || ||  | ||||||||||||| || ||| || || ||||| || | ||||| |||||||
Sbjct: 442 tctacagcatgcttgatgcaaggatgctcgagtgccttggcaggtaaaagctccagctca 383

                              
Query: 597 gtgtggaactccgcaattc 615
           |||||||| || |||||||
Sbjct: 382 gtgtggaattcggcaattc 364
to top
>ref|XM_477795.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 804

 Score =  196 bits (99), Expect = 6e-47
 Identities = 311/382 (81%)
 Strand = Plus / Minus

                                                                       
Query: 234 ggtatctccttgcagggctgcgactccttcgccttctggaacaagacgctgccgtccttg 293
           |||||||||||||||||||| | |||||||||||||||||| ||||||   || ||||| 
Sbjct: 743 ggtatctccttgcagggctgggtctccttcgccttctggaagaagacggaaccatccttt 684

                                                                       
Query: 294 acatcccactcggggtgttcctctgcgatgtactgctgcagttccttgtcggagctgaac 353
           || ||||| || ||||| ||||||||||||||||| |||| ||| ||||| |||||||||
Sbjct: 683 acctcccattcagggtgctcctctgcgatgtactggtgcaattctttgtcagagctgaac 624

                                                                       
Query: 354 ataaacatctgcttcgcatcgcttattgacaggtaatcatatcccttctcgctgcaccca 413
           || | ||  ||  | || ||   ||||||||  |||||||| |||||||| ||||| |||
Sbjct: 623 atcagcacttgtcttgcttcagctattgacatataatcataacccttctcactgcaacca 564

                                                                       
Query: 414 gctatctcgtctctaaccgttttggcgagaaggtccatgaagtatacgtaggtctcatgc 473
           || |  || ||||| || |||||||| ||||| ||||||||||| || || || || || 
Sbjct: 563 gccagttcatctctgactgttttggcaagaagatccatgaagtacacatatgtttcgtgg 504

                                                                       
Query: 474 ggtgcggtttgccgagcgctcagcacacggttgtaggcgccctccataaaggactgctcg 533
           ||  | |  || |||||||||| ||| |||||||| || ||||||||||| |||||||| 
Sbjct: 503 ggcacagcctggcgagcgctcaacactcggttgtaagcaccctccataaatgactgctca 444

                                                                       
Query: 534 agctcaaccccgtgcttgatgcaagcattctccagcgctttggcgggcagaagctncagc 593
           ||||| ||| | ||||||||||||| ||| || || ||| || | |||||||| | ||||
Sbjct: 443 agctccaccgcatgcttgatgcaaggattttcaagtgctgtgaccggcagaagttccagc 384

                                 
Query: 594 tcagtgtggaactccgcaattc 615
           |||||||||||||| |||||||
Sbjct: 383 tcagtgtggaactctgcaattc 362
to top
>dbj|AK101316.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033034D03, full
           insert sequence
          Length = 1218

 Score =  196 bits (99), Expect = 6e-47
 Identities = 311/382 (81%)
 Strand = Plus / Minus

                                                                       
Query: 234 ggtatctccttgcagggctgcgactccttcgccttctggaacaagacgctgccgtccttg 293
           |||||||||||||||||||| | |||||||||||||||||| ||||||   || ||||| 
Sbjct: 823 ggtatctccttgcagggctgggtctccttcgccttctggaagaagacggaaccatccttt 764

                                                                       
Query: 294 acatcccactcggggtgttcctctgcgatgtactgctgcagttccttgtcggagctgaac 353
           || ||||| || ||||| ||||||||||||||||| |||| ||| ||||| |||||||||
Sbjct: 763 acctcccattcagggtgctcctctgcgatgtactggtgcaattctttgtcagagctgaac 704

                                                                       
Query: 354 ataaacatctgcttcgcatcgcttattgacaggtaatcatatcccttctcgctgcaccca 413
           || | ||  ||  | || ||   ||||||||  |||||||| |||||||| ||||| |||
Sbjct: 703 atcagcacttgtcttgcttcagctattgacatataatcataacccttctcactgcaacca 644

                                                                       
Query: 414 gctatctcgtctctaaccgttttggcgagaaggtccatgaagtatacgtaggtctcatgc 473
           || |  || ||||| || |||||||| ||||| ||||||||||| || || || || || 
Sbjct: 643 gccagttcatctctgactgttttggcaagaagatccatgaagtacacatatgtttcgtgg 584

                                                                       
Query: 474 ggtgcggtttgccgagcgctcagcacacggttgtaggcgccctccataaaggactgctcg 533
           ||  | |  || |||||||||| ||| |||||||| || ||||||||||| |||||||| 
Sbjct: 583 ggcacagcctggcgagcgctcaacactcggttgtaagcaccctccataaatgactgctca 524

                                                                       
Query: 534 agctcaaccccgtgcttgatgcaagcattctccagcgctttggcgggcagaagctncagc 593
           ||||| ||| | ||||||||||||| ||| || || ||| || | |||||||| | ||||
Sbjct: 523 agctccaccgcatgcttgatgcaaggattttcaagtgctgtgaccggcagaagttccagc 464

                                 
Query: 594 tcagtgtggaactccgcaattc 615
           |||||||||||||| |||||||
Sbjct: 463 tcagtgtggaactctgcaattc 442
to top
>dbj|AK061408.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-306-A10, full
           insert sequence
          Length = 1053

 Score =  196 bits (99), Expect = 6e-47
 Identities = 311/382 (81%)
 Strand = Plus / Minus

                                                                       
Query: 234 ggtatctccttgcagggctgcgactccttcgccttctggaacaagacgctgccgtccttg 293
           |||||||||||||||||||| | |||||||||||||||||| ||||||   || ||||| 
Sbjct: 822 ggtatctccttgcagggctgggtctccttcgccttctggaagaagacggaaccatccttt 763

                                                                       
Query: 294 acatcccactcggggtgttcctctgcgatgtactgctgcagttccttgtcggagctgaac 353
           || ||||| || ||||| ||||||||||||||||| |||| ||| ||||| |||||||||
Sbjct: 762 acctcccattcagggtgctcctctgcgatgtactggtgcaattctttgtcagagctgaac 703

                                                                       
Query: 354 ataaacatctgcttcgcatcgcttattgacaggtaatcatatcccttctcgctgcaccca 413
           || | ||  ||  | || ||   ||||||||  |||||||| |||||||| ||||| |||
Sbjct: 702 atcagcacttgtcttgcttcagctattgacatataatcataacccttctcactgcaacca 643

                                                                       
Query: 414 gctatctcgtctctaaccgttttggcgagaaggtccatgaagtatacgtaggtctcatgc 473
           || |  || ||||| || |||||||| ||||| ||||||||||| || || || || || 
Sbjct: 642 gccagttcatctctgactgttttggcaagaagatccatgaagtacacatatgtttcgtgg 583

                                                                       
Query: 474 ggtgcggtttgccgagcgctcagcacacggttgtaggcgccctccataaaggactgctcg 533
           ||  | |  || |||||||||| ||| |||||||| || ||||||||||| |||||||| 
Sbjct: 582 ggcacagcctggcgagcgctcaacactcggttgtaagcaccctccataaatgactgctca 523

                                                                       
Query: 534 agctcaaccccgtgcttgatgcaagcattctccagcgctttggcgggcagaagctncagc 593
           ||||| ||| | ||||||||||||| ||| || || ||| || | |||||||| | ||||
Sbjct: 522 agctccaccgcatgcttgatgcaaggattttcaagtgctgtgaccggcagaagttccagc 463

                                 
Query: 594 tcagtgtggaactccgcaattc 615
           |||||||||||||| |||||||
Sbjct: 462 tcagtgtggaactctgcaattc 441
to top
>dbj|AK061383.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-304-H08, full
           insert sequence
          Length = 1230

 Score =  196 bits (99), Expect = 6e-47
 Identities = 311/382 (81%)
 Strand = Plus / Minus

                                                                       
Query: 234 ggtatctccttgcagggctgcgactccttcgccttctggaacaagacgctgccgtccttg 293
           |||||||||||||||||||| | |||||||||||||||||| ||||||   || ||||| 
Sbjct: 834 ggtatctccttgcagggctgggtctccttcgccttctggaagaagacggaaccatccttt 775

                                                                       
Query: 294 acatcccactcggggtgttcctctgcgatgtactgctgcagttccttgtcggagctgaac 353
           || ||||| || ||||| ||||||||||||||||| |||| ||| ||||| |||||||||
Sbjct: 774 acctcccattcagggtgctcctctgcgatgtactggtgcaattctttgtcagagctgaac 715

                                                                       
Query: 354 ataaacatctgcttcgcatcgcttattgacaggtaatcatatcccttctcgctgcaccca 413
           || | ||  ||  | || ||   ||||||||  |||||||| |||||||| ||||| |||
Sbjct: 714 atcagcacttgtcttgcttcagctattgacatataatcataacccttctcactgcaacca 655

                                                                       
Query: 414 gctatctcgtctctaaccgttttggcgagaaggtccatgaagtatacgtaggtctcatgc 473
           || |  || ||||| || |||||||| ||||| ||||||||||| || || || || || 
Sbjct: 654 gccagttcatctctgactgttttggcaagaagatccatgaagtacacatatgtttcgtgg 595

                                                                       
Query: 474 ggtgcggtttgccgagcgctcagcacacggttgtaggcgccctccataaaggactgctcg 533
           ||  | |  || |||||||||| ||| |||||||| || ||||||||||| |||||||| 
Sbjct: 594 ggcacagcctggcgagcgctcaacactcggttgtaagcaccctccataaatgactgctca 535

                                                                       
Query: 534 agctcaaccccgtgcttgatgcaagcattctccagcgctttggcgggcagaagctncagc 593
           ||||| ||| | ||||||||||||| ||| || || ||| || | |||||||| | ||||
Sbjct: 534 agctccaccgcatgcttgatgcaaggattttcaagtgctgtgaccggcagaagttccagc 475

                                 
Query: 594 tcagtgtggaactccgcaattc 615
           |||||||||||||| |||||||
Sbjct: 474 tcagtgtggaactctgcaattc 453
to top
>dbj|AB037153.1| Oryza sativa (japonica cultivar-group) OsRPN12 mRNA for 26S
           proteasome regulatory particle non-ATPase subunit12,
           complete cds
          Length = 1063

 Score =  196 bits (99), Expect = 6e-47
 Identities = 311/382 (81%)
 Strand = Plus / Minus

                                                                       
Query: 234 ggtatctccttgcagggctgcgactccttcgccttctggaacaagacgctgccgtccttg 293
           |||||||||||||||||||| | |||||||||||||||||| ||||||   || ||||| 
Sbjct: 818 ggtatctccttgcagggctgggtctccttcgccttctggaagaagacggaaccatccttt 759

                                                                       
Query: 294 acatcccactcggggtgttcctctgcgatgtactgctgcagttccttgtcggagctgaac 353
           || ||||| || ||||| ||||||||||||||||| |||| ||| ||||| |||||||||
Sbjct: 758 acctcccattcagggtgctcctctgcgatgtactggtgcaattctttgtcagagctgaac 699

                                                                       
Query: 354 ataaacatctgcttcgcatcgcttattgacaggtaatcatatcccttctcgctgcaccca 413
           || | ||  ||  | || ||   ||||||||  |||||||| |||||||| ||||| |||
Sbjct: 698 atcagcacttgtcttgcttcagctattgacatataatcataacccttctcactgcaacca 639

                                                                       
Query: 414 gctatctcgtctctaaccgttttggcgagaaggtccatgaagtatacgtaggtctcatgc 473
           || |  || ||||| || |||||||| ||||| ||||||||||| || || || || || 
Sbjct: 638 gccagttcatctctgactgttttggcaagaagatccatgaagtacacatatgtttcgtgg 579

                                                                       
Query: 474 ggtgcggtttgccgagcgctcagcacacggttgtaggcgccctccataaaggactgctcg 533
           ||  | |  || |||||||||| ||| |||||||| || ||||||||||| |||||||| 
Sbjct: 578 ggcacagcctggcgagcgctcaacactcggttgtaagcaccctccataaatgactgctca 519

                                                                       
Query: 534 agctcaaccccgtgcttgatgcaagcattctccagcgctttggcgggcagaagctncagc 593
           ||||| ||| | ||||||||||||| ||| || || ||| || | |||||||| | ||||
Sbjct: 518 agctccaccgcatgcttgatgcaaggattttcaagtgctgtgaccggcagaagttccagc 459

                                 
Query: 594 tcagtgtggaactccgcaattc 615
           |||||||||||||| |||||||
Sbjct: 458 tcagtgtggaactctgcaattc 437
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  109 bits (55), Expect = 1e-20
 Identities = 111/130 (85%)
 Strand = Plus / Plus

                                                                            
Query: 486      cgagcgctcagcacacggttgtaggcgccctccataaaggactgctcgagctcaaccccg 545
                |||||||||| ||| |||||||| || ||||||||||| |||||||| ||||| ||| | 
Sbjct: 14474709 cgagcgctcaacactcggttgtaagcaccctccataaatgactgctcaagctccaccgca 14474768

                                                                            
Query: 546      tgcttgatgcaagcattctccagcgctttggcgggcagaagctncagctcagtgtggaac 605
                ||||||||||||| ||| || || ||| || | |||||||| | ||||||||||||||||
Sbjct: 14474769 tgcttgatgcaaggattttcaagtgctgtgaccggcagaagttccagctcagtgtggaac 14474828

                          
Query: 606      tccgcaattc 615
                || |||||||
Sbjct: 14474829 tctgcaattc 14474838



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 45/48 (93%)
 Strand = Plus / Plus

                                                                
Query: 234      ggtatctccttgcagggctgcgactccttcgccttctggaacaagacg 281
                |||||||||||||||||||| | |||||||||||||||||| ||||||
Sbjct: 14474267 ggtatctccttgcagggctgggtctccttcgccttctggaagaagacg 14474314



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                           
Query: 313      cctctgcgatgtactgctgcagttccttgtcggagctgaacat 355
                |||||||||||||||| |||| ||| ||||| |||||||||||
Sbjct: 14474428 cctctgcgatgtactggtgcaattctttgtcagagctgaacat 14474470
to top
>dbj|AP005200.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0673E01
          Length = 125909

 Score =  109 bits (55), Expect = 1e-20
 Identities = 111/130 (85%)
 Strand = Plus / Plus

                                                                         
Query: 486   cgagcgctcagcacacggttgtaggcgccctccataaaggactgctcgagctcaaccccg 545
             |||||||||| ||| |||||||| || ||||||||||| |||||||| ||||| ||| | 
Sbjct: 95040 cgagcgctcaacactcggttgtaagcaccctccataaatgactgctcaagctccaccgca 95099

                                                                         
Query: 546   tgcttgatgcaagcattctccagcgctttggcgggcagaagctncagctcagtgtggaac 605
             ||||||||||||| ||| || || ||| || | |||||||| | ||||||||||||||||
Sbjct: 95100 tgcttgatgcaaggattttcaagtgctgtgaccggcagaagttccagctcagtgtggaac 95159

                       
Query: 606   tccgcaattc 615
             || |||||||
Sbjct: 95160 tctgcaattc 95169



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 45/48 (93%)
 Strand = Plus / Plus

                                                             
Query: 234   ggtatctccttgcagggctgcgactccttcgccttctggaacaagacg 281
             |||||||||||||||||||| | |||||||||||||||||| ||||||
Sbjct: 94598 ggtatctccttgcagggctgggtctccttcgccttctggaagaagacg 94645



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                        
Query: 313   cctctgcgatgtactgctgcagttccttgtcggagctgaacat 355
             |||||||||||||||| |||| ||| ||||| |||||||||||
Sbjct: 94759 cctctgcgatgtactggtgcaattctttgtcagagctgaacat 94801
to top
>ref|NM_123569.1| Arabidopsis thaliana peptidase AT5G42040 mRNA, complete cds
          Length = 480

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 139/169 (82%)
 Strand = Plus / Minus

                                                                       
Query: 399 ttctcgctgcacccagctatctcgtctctaaccgttttggcgagaaggtccatgaagtat 458
           ||||| ||||| |||||||| || |||||||  ||||| || |  || |||||||| || 
Sbjct: 254 ttctcactgcatccagctatttcatctctaatggtttttgccaagagatccatgaaatag 195

                                                                       
Query: 459 acgtaggtctcatgcggtgcggtttgccgagcgctcagcacacggttgtaggcgccctcc 518
           ||||| |||||||  ||||||||||| | ||| |||| ||||||||| || || || |||
Sbjct: 194 acgtaagtctcatcaggtgcggtttgtctagcactcaacacacggttataagcaccttcc 135

                                                            
Query: 519 ataaaggactgctcgagctcaaccccgtgcttgatgcaagcattctcca 567
           || ||||| ||||||||||| ||| | ||||||||||||| ||||||||
Sbjct: 134 atgaaggattgctcgagctccaccgcatgcttgatgcaaggattctcca 86
to top
>gb|AY258413.1| Arabidopsis thaliana 26S proteasome subunit RPN12b (RPN12b) mRNA,
           complete cds
          Length = 480

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 139/169 (82%)
 Strand = Plus / Minus

                                                                       
Query: 399 ttctcgctgcacccagctatctcgtctctaaccgttttggcgagaaggtccatgaagtat 458
           ||||| ||||| |||||||| || |||||||  ||||| || |  || |||||||| || 
Sbjct: 254 ttctcactgcatccagctatttcatctctaatggtttttgccaagagatccatgaaatag 195

                                                                       
Query: 459 acgtaggtctcatgcggtgcggtttgccgagcgctcagcacacggttgtaggcgccctcc 518
           ||||| |||||||  ||||||||||| | ||| |||| ||||||||| || || || |||
Sbjct: 194 acgtaagtctcatcaggtgcggtttgtctagcactcaacacacggttataagcaccttcc 135

                                                            
Query: 519 ataaaggactgctcgagctcaaccccgtgcttgatgcaagcattctcca 567
           || ||||| ||||||||||| ||| | ||||||||||||| ||||||||
Sbjct: 134 atgaaggattgctcgagctccaccgcatgcttgatgcaaggattctcca 86
to top
>dbj|AB017067.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MJC20
          Length = 83689

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 102/121 (84%)
 Strand = Plus / Plus

                                                                         
Query: 447   tccatgaagtatacgtaggtctcatgcggtgcggtttgccgagcgctcagcacacggttg 506
             |||||||| || ||||| |||||||  ||||||||||| | ||| |||| ||||||||| 
Sbjct: 36424 tccatgaaatagacgtaagtctcatcaggtgcggtttgtctagcactcaacacacggtta 36483

                                                                         
Query: 507   taggcgccctccataaaggactgctcgagctcaaccccgtgcttgatgcaagcattctcc 566
             || || || ||||| ||||| ||||||||||| ||| | ||||||||||||| |||||||
Sbjct: 36484 taagcaccttccatgaaggattgctcgagctccaccgcatgcttgatgcaaggattctcc 36543

              
Query: 567   a 567
             |
Sbjct: 36544 a 36544
to top
>ref|NM_105127.2| Arabidopsis thaliana peptidase AT1G64520 mRNA, complete cds
          Length = 1063

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 57/67 (85%)
 Strand = Plus / Minus

                                                                       
Query: 492 ctcagcacacggttgtaggcgccctccataaaggactgctcgagctcaaccccgtgcttg 551
           |||| ||||||||| ||||| |||||||| ||||| ||||| ||||| ||  | ||||||
Sbjct: 546 ctcaacacacggttataggcaccctccatgaaggattgctcaagctctactgcatgcttg 487

                  
Query: 552 atgcaag 558
           |||||||
Sbjct: 486 atgcaag 480
to top
>gb|AY230847.1| Arabidopsis thaliana 26S proteasome subunit RPN12 (RPN12) mRNA,
           RPN12-2 allele, complete cds
          Length = 1054

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 57/67 (85%)
 Strand = Plus / Minus

                                                                       
Query: 492 ctcagcacacggttgtaggcgccctccataaaggactgctcgagctcaaccccgtgcttg 551
           |||| ||||||||| ||||| |||||||| ||||| ||||| ||||| ||  | ||||||
Sbjct: 518 ctcaacacacggttataggcaccctccatgaaggattgctcaagctctactgcatgcttg 459

                  
Query: 552 atgcaag 558
           |||||||
Sbjct: 458 atgcaag 452
to top
>gb|AY230846.1| Arabidopsis thaliana 26S proteasome subunit RPN12 (RPN12) mRNA,
           RPN12-1 allele, complete cds
          Length = 1038

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 57/67 (85%)
 Strand = Plus / Minus

                                                                       
Query: 492 ctcagcacacggttgtaggcgccctccataaaggactgctcgagctcaaccccgtgcttg 551
           |||| ||||||||| ||||| |||||||| ||||| ||||| ||||| ||  | ||||||
Sbjct: 508 ctcaacacacggttataggcaccctccatgaaggattgctcaagctctactgcatgcttg 449

                  
Query: 552 atgcaag 558
           |||||||
Sbjct: 448 atgcaag 442
to top
>gb|AY143888.1| Arabidopsis thaliana At1g64520/F1N19_10 mRNA, complete cds
          Length = 804

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 57/67 (85%)
 Strand = Plus / Minus

                                                                       
Query: 492 ctcagcacacggttgtaggcgccctccataaaggactgctcgagctcaaccccgtgcttg 551
           |||| ||||||||| ||||| |||||||| ||||| ||||| ||||| ||  | ||||||
Sbjct: 485 ctcaacacacggttataggcaccctccatgaaggattgctcaagctctactgcatgcttg 426

                  
Query: 552 atgcaag 558
           |||||||
Sbjct: 425 atgcaag 419
to top
>gb|AF410265.1|AF410265 Arabidopsis thaliana At1g64520/F1N19_10 mRNA, complete cds
          Length = 1008

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 57/67 (85%)
 Strand = Plus / Minus

                                                                       
Query: 492 ctcagcacacggttgtaggcgccctccataaaggactgctcgagctcaaccccgtgcttg 551
           |||| ||||||||| ||||| |||||||| ||||| ||||| ||||| ||  | ||||||
Sbjct: 531 ctcaacacacggttataggcaccctccatgaaggattgctcaagctctactgcatgcttg 472

                  
Query: 552 atgcaag 558
           |||||||
Sbjct: 471 atgcaag 465
to top
>gb|AY039857.1| Arabidopsis thaliana At1g64520/F1N19_10 mRNA, complete cds
          Length = 953

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 57/67 (85%)
 Strand = Plus / Minus

                                                                       
Query: 492 ctcagcacacggttgtaggcgccctccataaaggactgctcgagctcaaccccgtgcttg 551
           |||| ||||||||| ||||| |||||||| ||||| ||||| ||||| ||  | ||||||
Sbjct: 494 ctcaacacacggttataggcaccctccatgaaggattgctcaagctctactgcatgcttg 435

                  
Query: 552 atgcaag 558
           |||||||
Sbjct: 434 atgcaag 428
to top
>emb|BX815245.1|CNS0AAGS Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS46ZA05 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1025

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 57/67 (85%)
 Strand = Plus / Minus

                                                                       
Query: 492 ctcagcacacggttgtaggcgccctccataaaggactgctcgagctcaaccccgtgcttg 551
           |||| ||||||||| ||||| |||||||| ||||| ||||| ||||| ||  | ||||||
Sbjct: 527 ctcaacacacggttataggcaccctccatgaaggattgctcaagctctactgcatgcttg 468

                  
Query: 552 atgcaag 558
           |||||||
Sbjct: 467 atgcaag 461
to top
>gb|AC009519.4|AC009519 Genomic sequence for Arabidopsis thaliana BAC F1N19 from chromosome I,
             complete sequence
          Length = 113172

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 57/67 (85%)
 Strand = Plus / Minus

                                                                         
Query: 492   ctcagcacacggttgtaggcgccctccataaaggactgctcgagctcaaccccgtgcttg 551
             |||| ||||||||| ||||| |||||||| ||||| ||||| ||||| ||  | ||||||
Sbjct: 25905 ctcaacacacggttataggcaccctccatgaaggattgctcaagctctactgcatgcttg 25846

                    
Query: 552   atgcaag 558
             |||||||
Sbjct: 25845 atgcaag 25839
to top
>emb|BX816010.1|CNS0ABWV Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH22ZE10 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 960

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 56/67 (83%)
 Strand = Plus / Minus

                                                                       
Query: 492 ctcagcacacggttgtaggcgccctccataaaggactgctcgagctcaaccccgtgcttg 551
           |||| ||||||||| ||||| |||||||| ||||| | ||| ||||| ||  | ||||||
Sbjct: 538 ctcaacacacggttataggcaccctccatgaaggatttctcaagctctactgcatgcttg 479

                  
Query: 552 atgcaag 558
           |||||||
Sbjct: 478 atgcaag 472
to top
>ref|XM_809423.1| Trypanosoma cruzi strain CL Brener hypothetical protein
            (Tc00.1047053507257.50) partial mRNA
          Length = 5997

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 326  ctgctgcagttccttgtcggagctg 350
            |||| ||||||||||||||||||||
Sbjct: 2409 ctgccgcagttccttgtcggagctg 2385



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 326  ctgctgcagttccttgtcggagctg 350
            |||| ||||||||||||||||||||
Sbjct: 1686 ctgccgcagttccttgtcggagctg 1662



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 326 ctgctgcagttccttgtcggagctg 350
           |||| ||||||||||||||||||||
Sbjct: 963 ctgccgcagttccttgtcggagctg 939
to top
>ref|XM_816110.1| Trypanosoma cruzi strain CL Brener hypothetical protein
           (Tc00.1047053510329.260) partial mRNA
          Length = 4551

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 326 ctgctgcagttccttgtcggagctg 350
           |||| ||||||||||||||||||||
Sbjct: 963 ctgccgcagttccttgtcggagctg 939
to top
>emb|AL590398.9| Human DNA sequence from clone RP11-446G24 on chromosome 6 Contains the
             5' end of the HDAC2 gene for histone deacetylase 2 (human
             transcriptional regulator homolog RPD3, YAF1), two
             putative novel genes, a pseudogene similar to mouse D7Rp2e
             (DNA segment, Chr7, Roswell Park 2 complex, expressed) and
             a CpG island, complete sequence
          Length = 78366

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 152   ttgaaagaaaagagaggcaaa 172
             |||||||||||||||||||||
Sbjct: 12917 ttgaaagaaaagagaggcaaa 12937
to top
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome
          Length = 4940217

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 205     caagggtctggttgatgacgggcgc 229
               |||||||||||| ||||||||||||
Sbjct: 4808975 caagggtctggtcgatgacgggcgc 4808951
to top
>gb|AC087349.17| Homo sapiens chromosome 8, clone RP11-339A23, complete sequence
          Length = 96337

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 436   tggcgagaaggtccatgaagt 456
             |||||||||||||||||||||
Sbjct: 48730 tggcgagaaggtccatgaagt 48710
to top
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome
          Length = 4941439

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 205     caagggtctggttgatgacgggcgc 229
               |||||||||||| ||||||||||||
Sbjct: 4813886 caagggtctggtcgatgacgggcgc 4813862
to top
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome
          Length = 6438405

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 331     gcagttccttgtcggagctg 350
               ||||||||||||||||||||
Sbjct: 4057907 gcagttccttgtcggagctg 4057926
to top
>ref|XM_816106.1| Trypanosoma cruzi strain CL Brener hypothetical protein
            (Tc00.1047053510329.220) partial mRNA
          Length = 2064

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 472  gcggtgcggtttgccgagcg 491
            ||||||||||||||||||||
Sbjct: 991  gcggtgcggtttgccgagcg 1010
to top
>ref|XM_809419.1| Trypanosoma cruzi strain CL Brener hypothetical protein
           (Tc00.1047053507257.10) partial mRNA
          Length = 1210

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 472 gcggtgcggtttgccgagcg 491
           ||||||||||||||||||||
Sbjct: 134 gcggtgcggtttgccgagcg 153
to top
>emb|AL590727.5| Human DNA sequence from clone RP11-111D3 on chromosome 6 Contains a
              eukaryotic translation initiation factor 4E binding protein
              pseudogene and part of a novel gene, complete sequence
          Length = 127913

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 19     cttttgacatttcacagtat 38
              ||||||||||||||||||||
Sbjct: 108580 cttttgacatttcacagtat 108561
to top
>gb|AF535436.1| HIV-1 isolate 88USMF880113sg from USA envelope glycoprotein (env)
           gene, partial cds
          Length = 602

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 81  aaccaaaatagtacagctga 100
           ||||||||||||||||||||
Sbjct: 49  aaccaaaatagtacagctga 68
to top
>gb|CP000282.1| Saccharophagus degradans 2-40, complete genome
          Length = 5057531

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 474    ggtgcggtttgccgagcgct 493
              ||||||||||||||||||||
Sbjct: 591603 ggtgcggtttgccgagcgct 591622
to top
>gb|AC182752.1| Gasterosteus aculeatus clone VMRC26-161K14, complete sequence
          Length = 162574

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 46    agcactttggaaacagtggg 65
             ||||||||||||||||||||
Sbjct: 36157 agcactttggaaacagtggg 36176
to top
>gb|AC135782.4| Homo sapiens chromosome 16 clone CTD-2555A7, complete sequence
          Length = 163550

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 121   tccacctcttcatgggaaattcag 144
             |||||||||||||||||| |||||
Sbjct: 47235 tccacctcttcatgggaatttcag 47258
to top
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 247     agggctgcgactccttcgcc 266
               ||||||||||||||||||||
Sbjct: 7646676 agggctgcgactccttcgcc 7646695
to top
>ref|XM_321580.2| Anopheles gambiae str. PEST ENSANGP00000011799 (ENSANGG00000009310),
            partial mRNA
          Length = 1314

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 529  gctcgagctcaaccccgtgcttga 552
            |||||||||||| |||||||||||
Sbjct: 1170 gctcgagctcaagcccgtgcttga 1147
to top
>gb|AC122538.4| Mus musculus BAC clone RP24-548J11 from 16, complete sequence
          Length = 209585

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 138   aattcagtccaaagttgaaagaaa 161
             |||||||||||||| |||||||||
Sbjct: 92931 aattcagtccaaagctgaaagaaa 92908
to top
>gb|AC122871.4| Mus musculus BAC clone RP23-107P12 from 5, complete sequence
          Length = 213939

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 581   cagaagctncagctcagtgtgga 603
             |||||||| ||||||||||||||
Sbjct: 59806 cagaagctgcagctcagtgtgga 59828
to top
>dbj|AP006096.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT10G09, TM0173b,
             complete sequence
          Length = 66866

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 118   taatccacctcttcatgggaaatt 141
             |||||||||||||||| |||||||
Sbjct: 36400 taatccacctcttcattggaaatt 36377


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,503,653
Number of Sequences: 3902068
Number of extensions: 5503653
Number of successful extensions: 112232
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 111974
Number of HSP's gapped (non-prelim): 256
length of query: 615
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 592
effective length of database: 17,143,297,704
effective search space: 10148832240768
effective search space used: 10148832240768
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top