ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags8o24
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 357 3e-95
2gb|AC118668.2| Genomic sequence for Oryza sativa, Nipponbare str... 357 3e-95
3dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 357 3e-95
4dbj|AK119578.1| Oryza sativa (japonica cultivar-group) cDNA clon... 357 3e-95
5dbj|AK065552.1| Oryza sativa (japonica cultivar-group) cDNA clon... 357 3e-95
6emb|AJ495776.1|HVU495776 Hordeum vulgare partial mRNA for putati... 264 3e-67
7gb|AY265855.1| Zea mays roothairless 3 (rth3) gene, complete cds 246 8e-62
8gb|AY112035.1| Zea mays CL28146_1 mRNA sequence 210 4e-51
9ref|XM_610571.2| PREDICTED: Bos taurus similar to paraneoplastic... 46 0.15
10ref|NM_112950.2| Arabidopsis thaliana unknown protein AT3G20580 ... 44 0.58
11gb|BT005952.1| Arabidopsis thaliana At3g20580 gene, complete cds 44 0.58
12dbj|AP000410.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 44 0.58
13dbj|AK118605.1| Arabidopsis thaliana At3g20580 mRNA for predicte... 44 0.58
14ref|XM_533861.2| PREDICTED: Canis familiaris similar to T25G3.1 ... 42 2.3
15emb|AL499610.10| Human DNA sequence from clone RP11-394I17 on ch... 42 2.3
16emb|Z28383.1|TISACYS T.niveum (ATCC34921) simA gene for cyclospo... 42 2.3
17emb|AL163975.1|ATT15B3 Arabidopsis thaliana DNA chromosome 3, BA... 42 2.3
18gb|AC099513.3| Homo sapiens chromosome 5 clone RP11-395C3, compl... 42 2.3
19gb|AC093535.2| Homo sapiens chromosome 5 clone RP11-517I3, compl... 42 2.3
20ref|NM_123937.2| Arabidopsis thaliana unknown protein AT5G45700 ... 40 9.0
21gb|AC138265.9| Mus musculus chromosome 5, clone RP23-41J13, comp... 40 9.0
22gb|DP000014.1| Callithrix jacchus target 1 genomic scaffold 40 9.0
23gb|AC140302.2| Mus musculus BAC clone RP24-321I14 from chromosom... 40 9.0
24gb|AC161295.3| Aotus nancymaae clone CH258-83B20, complete sequence 40 9.0
25ref|XM_383298.1| Gibberella zeae PH-1 chromosome 2 hypothetical ... 40 9.0
26gb|AF316386.1| Eriocheir rectus strain ZJ1 internal transcribed ... 40 9.0
27gb|AC164403.5| Mus musculus chromosome 7, clone RP23-477O13, com... 40 9.0
28gb|AC112129.4| Homo sapiens 3 BAC RP11-25L9 (Roswell Park Cancer... 40 9.0
29gb|AC122153.4| Oryctolagus cuniculus clone LB1-9L8, complete seq... 40 9.0
30gb|AC091734.3| Genomic Sequence for Oryza sativa, Nipponbare str... 40 9.0
31gb|AC146661.3| Callithrix jacchus clone CH259-140E16, complete s... 40 9.0
32gb|AC013251.19| Homo sapiens 3 BAC RP11-38P22 (Roswell Park Canc... 40 9.0
33gb|AC182540.3| Ateles geoffroyi clone UC1-338I2, complete sequence 40 9.0
34gb|AF315668.1| Eriocheir rectus strain ZJ1 internal transcribed ... 40 9.0
35gb|AF315653.1| Eriocheir formosa strain TW1 internal transcribed... 40 9.0
36gb|DP000006.1| Oryctolagus cuniculus target 1 genomic scaffold 40 9.0
37gb|AC137072.2| Genomic sequence for Oryza sativa, Nipponbare str... 40 9.0
38dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.0
39dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.0
40gb|AC055766.31|AC055766 Mus musculus X BAC RP23-149C7 (Roswell P... 40 9.0
41dbj|AB012245.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 9.0
42gb|AC102758.10| Mus musculus chromosome 7, clone RP24-200F21, co... 40 9.0
43gb|AC158587.3| Mus musculus chromosome 7, clone RP24-156F13, com... 40 9.0
44gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 9.0
45gb|AC005288.1|AC005288 Homo sapiens chromosome 17, clone hCIT.13... 40 9.0
46gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 9.0
47emb|AL713933.6|CNS07YPE Oryza sativa chromosome 12, . BAC OJ1041... 40 9.0
48emb|AL731761.3|CNS07YPV Oryza sativa chromosome 12, . BAC OJ1119... 40 9.0
49gb|AC148541.3| Saimiri boliviensis boliviensis clone CH254-399L1... 40 9.0
50emb|AJ006945.1|HSA569 Human P2Y1 gene 40 9.0
51emb|AL732588.6| Mouse DNA sequence from clone RP24-159M19 on chr... 40 9.0 
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  357 bits (180), Expect = 3e-95
 Identities = 394/463 (85%), Gaps = 3/463 (0%)
 Strand = Plus / Minus

                                                                            
Query: 192      ccagaaacaaaaaaggtttcttacaaatggcgttgatggaaccacctgaaggaatcaaag 251
                ||||||||||||| ||||||||||||||||||| |||  ||||||||||| |||| ||||
Sbjct: 10573254 ccagaaacaaaaa-ggtttcttacaaatggcgtcgatccaaccacctgaaagaatgaaag 10573196

                                                                            
Query: 252      aatcggagcaacagcaacaagattattgctgaagcaacagcaaggccgaagcagccatga 311
                |||||||||||| ||  || ||||||||||||||||| |  |||||||||||||||| ||
Sbjct: 10573195 aatcggagcaacggc--caggattattgctgaagcaatacgaaggccgaagcagccagga 10573138

                                                                            
Query: 312      gcaagaccaaagcaagggcactgcttagatgggtcctgaatccatcactcttgatcggaa 371
                 ||| ||||  |  ||| ||||||| ||||||||||||||||||  | |  | || ||||
Sbjct: 10573137 ccaaaaccagtgagaggacactgctgagatgggtcctgaatccactattgctcattggaa 10573078

                                                                            
Query: 372      acctctgcggcatggcacattcgtcgccattgaagaagacctttgttgggaacccatctc 431
                 |||||| ||||| ||||| |||||||| ||||||||||||||||  ||||| |||||||
Sbjct: 10573077 tcctctgaggcattgcacactcgtcgccgttgaagaagacctttgaagggaaaccatctc 10573018

                                                                            
Query: 432      cggcgacaacatcaatatcaggagtaggcttcttggtgaatgagagcactgattgctgct 491
                | || |||||||  ||  |||||||  ||||||||||||||||||||||||| |||||||
Sbjct: 10573017 cagcaacaacattgatgccaggagtcagcttcttggtgaatgagagcactgactgctgct 10572958

                                                                            
Query: 492      ttcccggcacgaggtaatccgacccactcatgttggtctgcttcacaaggtaattgagcc 551
                | || ||||| ||||| || || ||||||||||||||||||||||| |||||||||||||
Sbjct: 10572957 tcccaggcacaaggtagtctgatccactcatgttggtctgcttcaccaggtaattgagcc 10572898

                                                                            
Query: 552      cctcaaggccctgcataaagattgtgttattgccctctgctgttgcattgaaagagtatg 611
                ||||||| || ||||| ||||| ||||| |||||  ||| |||   |||||||||||| |
Sbjct: 10572897 cctcaagaccttgcatgaagatggtgttcttgccaactgatgtgctattgaaagagtacg 10572838

                                                           
Query: 612      ccttctcaaatccatcatacgccttgtccatgaccatggcagc 654
                |||||||||| |||||||| |||||||||||||| || |||||
Sbjct: 10572837 ccttctcaaaaccatcataagccttgtccatgacaatagcagc 10572795



 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 576      tgttattgccctctgctgtt 595
                ||||||||||||||||||||
Sbjct: 10243904 tgttattgccctctgctgtt 10243923
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>gb|AC118668.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBa0036G02, from chromosome 3, complete sequence
          Length = 153308

 Score =  357 bits (180), Expect = 3e-95
 Identities = 394/463 (85%), Gaps = 3/463 (0%)
 Strand = Plus / Minus

                                                                          
Query: 192    ccagaaacaaaaaaggtttcttacaaatggcgttgatggaaccacctgaaggaatcaaag 251
              ||||||||||||| ||||||||||||||||||| |||  ||||||||||| |||| ||||
Sbjct: 129067 ccagaaacaaaaa-ggtttcttacaaatggcgtcgatccaaccacctgaaagaatgaaag 129009

                                                                          
Query: 252    aatcggagcaacagcaacaagattattgctgaagcaacagcaaggccgaagcagccatga 311
              |||||||||||| ||  || ||||||||||||||||| |  |||||||||||||||| ||
Sbjct: 129008 aatcggagcaacggc--caggattattgctgaagcaatacgaaggccgaagcagccagga 128951

                                                                          
Query: 312    gcaagaccaaagcaagggcactgcttagatgggtcctgaatccatcactcttgatcggaa 371
               ||| ||||  |  ||| ||||||| ||||||||||||||||||  | |  | || ||||
Sbjct: 128950 ccaaaaccagtgagaggacactgctgagatgggtcctgaatccactattgctcattggaa 128891

                                                                          
Query: 372    acctctgcggcatggcacattcgtcgccattgaagaagacctttgttgggaacccatctc 431
               |||||| ||||| ||||| |||||||| ||||||||||||||||  ||||| |||||||
Sbjct: 128890 tcctctgaggcattgcacactcgtcgccgttgaagaagacctttgaagggaaaccatctc 128831

                                                                          
Query: 432    cggcgacaacatcaatatcaggagtaggcttcttggtgaatgagagcactgattgctgct 491
              | || |||||||  ||  |||||||  ||||||||||||||||||||||||| |||||||
Sbjct: 128830 cagcaacaacattgatgccaggagtcagcttcttggtgaatgagagcactgactgctgct 128771

                                                                          
Query: 492    ttcccggcacgaggtaatccgacccactcatgttggtctgcttcacaaggtaattgagcc 551
              | || ||||| ||||| || || ||||||||||||||||||||||| |||||||||||||
Sbjct: 128770 tcccaggcacaaggtagtctgatccactcatgttggtctgcttcaccaggtaattgagcc 128711

                                                                          
Query: 552    cctcaaggccctgcataaagattgtgttattgccctctgctgttgcattgaaagagtatg 611
              ||||||| || ||||| ||||| ||||| |||||  ||| |||   |||||||||||| |
Sbjct: 128710 cctcaagaccttgcatgaagatggtgttcttgccaactgatgtgctattgaaagagtacg 128651

                                                         
Query: 612    ccttctcaaatccatcatacgccttgtccatgaccatggcagc 654
              |||||||||| |||||||| |||||||||||||| || |||||
Sbjct: 128650 ccttctcaaaaccatcataagccttgtccatgacaatagcagc 128608
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  357 bits (180), Expect = 3e-95
 Identities = 394/463 (85%), Gaps = 3/463 (0%)
 Strand = Plus / Minus

                                                                            
Query: 192      ccagaaacaaaaaaggtttcttacaaatggcgttgatggaaccacctgaaggaatcaaag 251
                ||||||||||||| ||||||||||||||||||| |||  ||||||||||| |||| ||||
Sbjct: 10571355 ccagaaacaaaaa-ggtttcttacaaatggcgtcgatccaaccacctgaaagaatgaaag 10571297

                                                                            
Query: 252      aatcggagcaacagcaacaagattattgctgaagcaacagcaaggccgaagcagccatga 311
                |||||||||||| ||  || ||||||||||||||||| |  |||||||||||||||| ||
Sbjct: 10571296 aatcggagcaacggc--caggattattgctgaagcaatacgaaggccgaagcagccagga 10571239

                                                                            
Query: 312      gcaagaccaaagcaagggcactgcttagatgggtcctgaatccatcactcttgatcggaa 371
                 ||| ||||  |  ||| ||||||| ||||||||||||||||||  | |  | || ||||
Sbjct: 10571238 ccaaaaccagtgagaggacactgctgagatgggtcctgaatccactattgctcattggaa 10571179

                                                                            
Query: 372      acctctgcggcatggcacattcgtcgccattgaagaagacctttgttgggaacccatctc 431
                 |||||| ||||| ||||| |||||||| ||||||||||||||||  ||||| |||||||
Sbjct: 10571178 tcctctgaggcattgcacactcgtcgccgttgaagaagacctttgaagggaaaccatctc 10571119

                                                                            
Query: 432      cggcgacaacatcaatatcaggagtaggcttcttggtgaatgagagcactgattgctgct 491
                | || |||||||  ||  |||||||  ||||||||||||||||||||||||| |||||||
Sbjct: 10571118 cagcaacaacattgatgccaggagtcagcttcttggtgaatgagagcactgactgctgct 10571059

                                                                            
Query: 492      ttcccggcacgaggtaatccgacccactcatgttggtctgcttcacaaggtaattgagcc 551
                | || ||||| ||||| || || ||||||||||||||||||||||| |||||||||||||
Sbjct: 10571058 tcccaggcacaaggtagtctgatccactcatgttggtctgcttcaccaggtaattgagcc 10570999

                                                                            
Query: 552      cctcaaggccctgcataaagattgtgttattgccctctgctgttgcattgaaagagtatg 611
                ||||||| || ||||| ||||| ||||| |||||  ||| |||   |||||||||||| |
Sbjct: 10570998 cctcaagaccttgcatgaagatggtgttcttgccaactgatgtgctattgaaagagtacg 10570939

                                                           
Query: 612      ccttctcaaatccatcatacgccttgtccatgaccatggcagc 654
                |||||||||| |||||||| |||||||||||||| || |||||
Sbjct: 10570938 ccttctcaaaaccatcataagccttgtccatgacaatagcagc 10570896



 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 576      tgttattgccctctgctgtt 595
                ||||||||||||||||||||
Sbjct: 10242005 tgttattgccctctgctgtt 10242024
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>dbj|AK119578.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-117-B09, full
            insert sequence
          Length = 2353

 Score =  357 bits (180), Expect = 3e-95
 Identities = 394/463 (85%), Gaps = 3/463 (0%)
 Strand = Plus / Minus

                                                                        
Query: 192  ccagaaacaaaaaaggtttcttacaaatggcgttgatggaaccacctgaaggaatcaaag 251
            ||||||||||||| ||||||||||||||||||| |||  ||||||||||| |||| ||||
Sbjct: 2128 ccagaaacaaaaa-ggtttcttacaaatggcgtcgatccaaccacctgaaagaatgaaag 2070

                                                                        
Query: 252  aatcggagcaacagcaacaagattattgctgaagcaacagcaaggccgaagcagccatga 311
            |||||||||||| ||  || ||||||||||||||||| |  |||||||||||||||| ||
Sbjct: 2069 aatcggagcaacggc--caggattattgctgaagcaatacgaaggccgaagcagccagga 2012

                                                                        
Query: 312  gcaagaccaaagcaagggcactgcttagatgggtcctgaatccatcactcttgatcggaa 371
             ||| ||||  |  ||| ||||||| ||||||||||||||||||  | |  | || ||||
Sbjct: 2011 ccaaaaccagtgagaggacactgctgagatgggtcctgaatccactattgctcattggaa 1952

                                                                        
Query: 372  acctctgcggcatggcacattcgtcgccattgaagaagacctttgttgggaacccatctc 431
             |||||| ||||| ||||| |||||||| ||||||||||||||||  ||||| |||||||
Sbjct: 1951 tcctctgaggcattgcacactcgtcgccgttgaagaagacctttgaagggaaaccatctc 1892

                                                                        
Query: 432  cggcgacaacatcaatatcaggagtaggcttcttggtgaatgagagcactgattgctgct 491
            | || |||||||  ||  |||||||  ||||||||||||||||||||||||| |||||||
Sbjct: 1891 cagcaacaacattgatgccaggagtcagcttcttggtgaatgagagcactgactgctgct 1832

                                                                        
Query: 492  ttcccggcacgaggtaatccgacccactcatgttggtctgcttcacaaggtaattgagcc 551
            | || ||||| ||||| || || ||||||||||||||||||||||| |||||||||||||
Sbjct: 1831 tcccaggcacaaggtagtctgatccactcatgttggtctgcttcaccaggtaattgagcc 1772

                                                                        
Query: 552  cctcaaggccctgcataaagattgtgttattgccctctgctgttgcattgaaagagtatg 611
            ||||||| || ||||| ||||| ||||| |||||  ||| |||   |||||||||||| |
Sbjct: 1771 cctcaagaccttgcatgaagatggtgttcttgccaactgatgtgctattgaaagagtacg 1712

                                                       
Query: 612  ccttctcaaatccatcatacgccttgtccatgaccatggcagc 654
            |||||||||| |||||||| |||||||||||||| || |||||
Sbjct: 1711 ccttctcaaaaccatcataagccttgtccatgacaatagcagc 1669
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>dbj|AK065552.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013027D03, full
            insert sequence
          Length = 2249

 Score =  357 bits (180), Expect = 3e-95
 Identities = 394/463 (85%), Gaps = 3/463 (0%)
 Strand = Plus / Minus

                                                                        
Query: 192  ccagaaacaaaaaaggtttcttacaaatggcgttgatggaaccacctgaaggaatcaaag 251
            ||||||||||||| ||||||||||||||||||| |||  ||||||||||| |||| ||||
Sbjct: 1991 ccagaaacaaaaa-ggtttcttacaaatggcgtcgatccaaccacctgaaagaatgaaag 1933

                                                                        
Query: 252  aatcggagcaacagcaacaagattattgctgaagcaacagcaaggccgaagcagccatga 311
            |||||||||||| ||  || ||||||||||||||||| |  |||||||||||||||| ||
Sbjct: 1932 aatcggagcaacggc--caggattattgctgaagcaatacgaaggccgaagcagccagga 1875

                                                                        
Query: 312  gcaagaccaaagcaagggcactgcttagatgggtcctgaatccatcactcttgatcggaa 371
             ||| ||||  |  ||| ||||||| ||||||||||||||||||  | |  | || ||||
Sbjct: 1874 ccaaaaccagtgagaggacactgctgagatgggtcctgaatccactattgctcattggaa 1815

                                                                        
Query: 372  acctctgcggcatggcacattcgtcgccattgaagaagacctttgttgggaacccatctc 431
             |||||| ||||| ||||| |||||||| ||||||||||||||||  ||||| |||||||
Sbjct: 1814 tcctctgaggcattgcacactcgtcgccgttgaagaagacctttgaagggaaaccatctc 1755

                                                                        
Query: 432  cggcgacaacatcaatatcaggagtaggcttcttggtgaatgagagcactgattgctgct 491
            | || |||||||  ||  |||||||  ||||||||||||||||||||||||| |||||||
Sbjct: 1754 cagcaacaacattgatgccaggagtcagcttcttggtgaatgagagcactgactgctgct 1695

                                                                        
Query: 492  ttcccggcacgaggtaatccgacccactcatgttggtctgcttcacaaggtaattgagcc 551
            | || ||||| ||||| || || ||||||||||||||||||||||| |||||||||||||
Sbjct: 1694 tcccaggcacaaggtagtctgatccactcatgttggtctgcttcaccaggtaattgagcc 1635

                                                                        
Query: 552  cctcaaggccctgcataaagattgtgttattgccctctgctgttgcattgaaagagtatg 611
            ||||||| || ||||| ||||| ||||| |||||  ||| |||   |||||||||||| |
Sbjct: 1634 cctcaagaccttgcatgaagatggtgttcttgccaactgatgtgctattgaaagagtacg 1575

                                                       
Query: 612  ccttctcaaatccatcatacgccttgtccatgaccatggcagc 654
            |||||||||| |||||||| |||||||||||||| || |||||
Sbjct: 1574 ccttctcaaaaccatcataagccttgtccatgacaatagcagc 1532
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>emb|AJ495776.1|HVU495776 Hordeum vulgare partial mRNA for putative phytochelatin synthetase
          Length = 1246

 Score =  264 bits (133), Expect = 3e-67
 Identities = 146/149 (97%), Gaps = 1/149 (0%)
 Strand = Plus / Minus

                                                                        
Query: 511  cgacccactcatgttggtctgcttcacaaggtaattgagcccctcaaggccctgcataaa 570
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1246 cgacccactcatgttggtttgcttcacaaggtaattgagcccctcaaggccctgcataaa 1187

                                                                        
Query: 571  gattgtgttattgccctctgctgttgcattgaaagagtatgccttctcaaat-ccatcat 629
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 1186 gattgtgttattgccctctgctgttgcattgaaagagtatgccttctcaaatcccatcat 1127

                                         
Query: 630  acgccttgtccatgaccatggcagcgaac 658
            |||| ||||||||||||||||||||||||
Sbjct: 1126 acgctttgtccatgaccatggcagcgaac 1098
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>gb|AY265855.1| Zea mays roothairless 3 (rth3) gene, complete cds
          Length = 3152

 Score =  246 bits (124), Expect = 8e-62
 Identities = 250/292 (85%)
 Strand = Plus / Minus

                                                                        
Query: 363  tgatcggaaacctctgcggcatggcacattcgtcgccattgaagaagacctttgttggga 422
            |||||||||  ||||| ||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 2503 tgatcggaattctctgtggcatagcgcattcgtcgccattgaagaagacctttgttggga 2444

                                                                        
Query: 423  acccatctccggcgacaacatcaatatcaggagtaggcttcttggtgaatgagagcactg 482
            | |||||||| || |||||||  |   | || ||  ||||||||||||||||||| ||||
Sbjct: 2443 agccatctccagcaacaacatttaaccccggggtcagcttcttggtgaatgagaggactg 2384

                                                                        
Query: 483  attgctgctttcccggcacgaggtaatccgacccactcatgttggtctgcttcacaaggt 542
            | || ||||| || || || ||||| || |||||||||||||||||||||||||| ||||
Sbjct: 2383 actgttgcttgccaggaacaaggtagtcggacccactcatgttggtctgcttcaccaggt 2324

                                                                        
Query: 543  aattgagcccctcaaggccctgcataaagattgtgttattgccctctgctgttgcattga 602
            |||| |||||||| || |||||||||||||| ||||| |||||| |||| ||  | ||||
Sbjct: 2323 aattaagcccctccagaccctgcataaagatcgtgttcttgcccactgcggtgccgttga 2264

                                                                
Query: 603  aagagtatgccttctcaaatccatcatacgccttgtccatgaccatggcagc 654
            | ||||| ||||||||||| || |||||||||||||||||||| ||||||||
Sbjct: 2263 acgagtaagccttctcaaagccgtcatacgccttgtccatgacgatggcagc 2212



 Score = 48.1 bits (24), Expect = 0.037
 Identities = 45/52 (86%)
 Strand = Plus / Minus

                                                                
Query: 208  tttcttacaaatggcgttgatggaaccacctgaaggaatcaaagaatcggag 259
            ||||||||||||||| | ||   ||||||||||| |||||||||||| ||||
Sbjct: 2650 tttcttacaaatggcatcgaccaaaccacctgaaagaatcaaagaattggag 2599
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>gb|AY112035.1| Zea mays CL28146_1 mRNA sequence
          Length = 663

 Score =  210 bits (106), Expect = 4e-51
 Identities = 309/379 (81%), Gaps = 3/379 (0%)
 Strand = Plus / Plus

                                                                       
Query: 276 attgctgaagcaacagcaaggccgaagcagccatgagcaagaccaaagcaagggcactgc 335
           ||||||| ||||| || || ||||||||||| | || | | |||| ||||||| ||||||
Sbjct: 240 attgctggagcaataggaaagccgaagcagcaaggaaccaaaccagagcaaggccactgc 299

                                                                       
Query: 336 ttagatgggtcctgaatccatcactcttgatcggaaacctctgcggcatggcacattcgt 395
           | ||| |||| ||||||||| | |||   |||||||  ||||| ||||| || |||||||
Sbjct: 300 tgagacgggtgctgaatccagcgctc---atcggaattctctggggcatagcgcattcgt 356

                                                                       
Query: 396 cgccattgaagaagacctttgttgggaacccatctccggcgacaacatcaatatcaggag 455
           |||||||||||||||||||||||||||| |||||||| || || ||||  ||  | || |
Sbjct: 357 cgccattgaagaagacctttgttgggaagccatctccagcaacgacatttatccccgggg 416

                                                                       
Query: 456 taggcttcttggtgaatgagagcactgattgctgctttcccggcacgaggtaatccgacc 515
           |  |||||||||||||||| ||          ||||| || ||||| ||||| || ||||
Sbjct: 417 tcagcttcttggtgaatgaaagnnnnnnnnnttgcttgccaggcacaaggtagtcggacc 476

                                                                       
Query: 516 cactcatgttggtctgcttcacaaggtaattgagcccctcaaggccctgcataaagattg 575
           | |||||||| ||||||||||| |||||||| |||||||| || |||||||||||||| |
Sbjct: 477 cgctcatgttagtctgcttcaccaggtaattaagcccctccagaccctgcataaagatcg 536

                                                                       
Query: 576 tgttattgccctctgctgttgcattgaaagagtatgccttctcaaatccatcatacgcct 635
           |||| |||||| |||| ||  | ||||| ||||| ||||||||||| || ||||||||||
Sbjct: 537 tgttcttgcccactgcagtgccgttgaacgagtacgccttctcaaagccgtcatacgcct 596

                              
Query: 636 tgtccatgaccatggcagc 654
           |||||||||| ||||||||
Sbjct: 597 tgtccatgacgatggcagc 615



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 231 aaccacctgaaggaatcaaagaatcggag 259
           ||||||||||| |||||||||||| ||||
Sbjct: 200 aaccacctgaaagaatcaaagaattggag 228
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>ref|XM_610571.2| PREDICTED: Bos taurus similar to paraneoplastic antigen MA1
           (LOC532062), partial mRNA
          Length = 1086

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 636 tgtccatgaccatggcagcgaac 658
           |||||||||||||||||||||||
Sbjct: 5   tgtccatgaccatggcagcgaac 27
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>ref|NM_112950.2| Arabidopsis thaliana unknown protein AT3G20580 mRNA, complete cds
          Length = 2372

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 386  gcacattcgtcgccattgaagaagacctttgttgggaa 423
            |||||||| || ||||||||||| | ||||||||||||
Sbjct: 2056 gcacattcttctccattgaagaaaagctttgttgggaa 2019
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>gb|BT005952.1| Arabidopsis thaliana At3g20580 gene, complete cds
          Length = 2019

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 386  gcacattcgtcgccattgaagaagacctttgttgggaa 423
            |||||||| || ||||||||||| | ||||||||||||
Sbjct: 1910 gcacattcttctccattgaagaaaagctttgttgggaa 1873
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>dbj|AP000410.1| Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone: K10D20
          Length = 55161

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                   
Query: 386   gcacattcgtcgccattgaagaagacctttgttgggaa 423
             |||||||| || ||||||||||| | ||||||||||||
Sbjct: 37338 gcacattcttctccattgaagaaaagctttgttgggaa 37375
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>dbj|AK118605.1| Arabidopsis thaliana At3g20580 mRNA for predicted GPI-anchored
            protein (by homology), complete cds, clone: RAFL19-85-G13
          Length = 2373

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 386  gcacattcgtcgccattgaagaagacctttgttgggaa 423
            |||||||| || ||||||||||| | ||||||||||||
Sbjct: 2057 gcacattcttctccattgaagaaaagctttgttgggaa 2020
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>ref|XM_533861.2| PREDICTED: Canis familiaris similar to T25G3.1 (LOC476657), mRNA
          Length = 648

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 297 ccgaagcagccatgagcaaga 317
           |||||||||||||||||||||
Sbjct: 41  ccgaagcagccatgagcaaga 61
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>emb|AL499610.10| Human DNA sequence from clone RP11-394I17 on chromosome 6 Contains two
             novel genes, complete sequence
          Length = 64986

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 32    catgcagtaaataactaaata 52
             |||||||||||||||||||||
Sbjct: 58749 catgcagtaaataactaaata 58769
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>emb|Z28383.1|TISACYS T.niveum (ATCC34921) simA gene for cyclosporine synthetase
          Length = 46899

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 521  atgttggtctgcttcacaagg 541
            |||||||||||||||||||||
Sbjct: 6136 atgttggtctgcttcacaagg 6116
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>emb|AL163975.1|ATT15B3 Arabidopsis thaliana DNA chromosome 3, BAC clone T15B3
          Length = 114656

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 197   aacaaaaaaggtttcttacaa 217
             |||||||||||||||||||||
Sbjct: 24051 aacaaaaaaggtttcttacaa 24071
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>gb|AC099513.3| Homo sapiens chromosome 5 clone RP11-395C3, complete sequence
          Length = 156348

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 185    tagatcaccagaaacaaaaaa 205
              |||||||||||||||||||||
Sbjct: 151699 tagatcaccagaaacaaaaaa 151719
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>gb|AC093535.2| Homo sapiens chromosome 5 clone RP11-517I3, complete sequence
          Length = 132710

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 185   tagatcaccagaaacaaaaaa 205
             |||||||||||||||||||||
Sbjct: 84017 tagatcaccagaaacaaaaaa 83997
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>ref|NM_123937.2| Arabidopsis thaliana unknown protein AT5G45700 mRNA, complete cds
          Length = 848

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 391 ttcgtcgccattgaagaaga 410
           ||||||||||||||||||||
Sbjct: 40  ttcgtcgccattgaagaaga 21
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>gb|AC138265.9| Mus musculus chromosome 5, clone RP23-41J13, complete sequence
          Length = 172279

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 588   ctgctgttgcattgaaagag 607
             ||||||||||||||||||||
Sbjct: 27827 ctgctgttgcattgaaagag 27808
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>gb|DP000014.1| Callithrix jacchus target 1 genomic scaffold
          Length = 1952403

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 55      atcatctcaaagggaaccta 74
               ||||||||||||||||||||
Sbjct: 1440221 atcatctcaaagggaaccta 1440202
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>gb|AC140302.2| Mus musculus BAC clone RP24-321I14 from chromosome 5, complete sequence
          Length = 174372

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 588    ctgctgttgcattgaaagag 607
              ||||||||||||||||||||
Sbjct: 159768 ctgctgttgcattgaaagag 159787
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>gb|AC161295.3| Aotus nancymaae clone CH258-83B20, complete sequence
          Length = 151730

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 55     atcatctcaaagggaaccta 74
              ||||||||||||||||||||
Sbjct: 135574 atcatctcaaagggaaccta 135555
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>ref|XM_383298.1| Gibberella zeae PH-1 chromosome 2 hypothetical protein (FG03122.1)
           partial mRNA
          Length = 1218

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 281 tgaagcaacagcaaggccga 300
           ||||||||||||||||||||
Sbjct: 51  tgaagcaacagcaaggccga 32
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>gb|AF316386.1| Eriocheir rectus strain ZJ1 internal transcribed spacer 1, 5.8S
            ribosomal RNA gene, and internal transcribed spacer 2,
            complete sequence
          Length = 1144

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 256  ggagcaacagcaacaagatt 275
            ||||||||||||||||||||
Sbjct: 1072 ggagcaacagcaacaagatt 1053
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>gb|AC164403.5| Mus musculus chromosome 7, clone RP23-477O13, complete sequence
          Length = 191303

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 608    tatgccttctcaaatccatc 627
              ||||||||||||||||||||
Sbjct: 145079 tatgccttctcaaatccatc 145098
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>gb|AC112129.4| Homo sapiens 3 BAC RP11-25L9 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 163621

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 466   ggtgaatgagagcactgatt 485
             ||||||||||||||||||||
Sbjct: 49770 ggtgaatgagagcactgatt 49751
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>gb|AC122153.4| Oryctolagus cuniculus clone LB1-9L8, complete sequence
          Length = 216345

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 268   acaagattattgctgaagcaacag 291
             |||||||||||||| |||||||||
Sbjct: 80948 acaagattattgctcaagcaacag 80925
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>gb|AC091734.3| Genomic Sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0068A07, from Chromosome 10, complete sequence
          Length = 154505

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 416   gttgggaacccatctccggc 435
             ||||||||||||||||||||
Sbjct: 30459 gttgggaacccatctccggc 30478
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>gb|AC146661.3| Callithrix jacchus clone CH259-140E16, complete sequence
          Length = 173865

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 55    atcatctcaaagggaaccta 74
             ||||||||||||||||||||
Sbjct: 74672 atcatctcaaagggaaccta 74653
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>gb|AC013251.19| Homo sapiens 3 BAC RP11-38P22 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 176251

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 464   ttggtgaatgagagcactga 483
             ||||||||||||||||||||
Sbjct: 70887 ttggtgaatgagagcactga 70906
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>gb|AC182540.3| Ateles geoffroyi clone UC1-338I2, complete sequence
          Length = 178244

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 55    atcatctcaaagggaaccta 74
             ||||||||||||||||||||
Sbjct: 44313 atcatctcaaagggaaccta 44294
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>gb|AF315668.1| Eriocheir rectus strain ZJ1 internal transcribed spacer 2, partial
           sequence
          Length = 640

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 256 ggagcaacagcaacaagatt 275
           ||||||||||||||||||||
Sbjct: 568 ggagcaacagcaacaagatt 549
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>gb|AF315653.1| Eriocheir formosa strain TW1 internal transcribed spacer 2, partial
           sequence
          Length = 640

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 256 ggagcaacagcaacaagatt 275
           ||||||||||||||||||||
Sbjct: 568 ggagcaacagcaacaagatt 549
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>gb|DP000006.1| Oryctolagus cuniculus target 1 genomic scaffold
          Length = 1889755

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 268    acaagattattgctgaagcaacag 291
              |||||||||||||| |||||||||
Sbjct: 321964 acaagattattgctcaagcaacag 321941
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>gb|AC137072.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBa0045E22, from chromosome 3, complete sequence
          Length = 160920

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 576    tgttattgccctctgctgtt 595
              ||||||||||||||||||||
Sbjct: 105317 tgttattgccctctgctgtt 105336
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 576     tgttattgccctctgctgttgcat 599
               |||||||||| |||||||||||||
Sbjct: 3675864 tgttattgccatctgctgttgcat 3675841
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 416      gttgggaacccatctccggc 435
                ||||||||||||||||||||
Sbjct: 12509034 gttgggaacccatctccggc 12509053
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>gb|AC055766.31|AC055766 Mus musculus X BAC RP23-149C7 (Roswell Park Cancer Institute Mouse BAC
              Library) complete sequence
          Length = 222658

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 235    acctgaaggaatcaaagaat 254
              ||||||||||||||||||||
Sbjct: 216199 acctgaaggaatcaaagaat 216180
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>dbj|AB012245.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MRA19
          Length = 86722

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 391   ttcgtcgccattgaagaaga 410
             ||||||||||||||||||||
Sbjct: 41434 ttcgtcgccattgaagaaga 41415
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>gb|AC102758.10| Mus musculus chromosome 7, clone RP24-200F21, complete sequence
          Length = 181057

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 608   tatgccttctcaaatccatc 627
             ||||||||||||||||||||
Sbjct: 80538 tatgccttctcaaatccatc 80557
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>gb|AC158587.3| Mus musculus chromosome 7, clone RP24-156F13, complete sequence
          Length = 152262

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 608    tatgccttctcaaatccatc 627
              ||||||||||||||||||||
Sbjct: 111962 tatgccttctcaaatccatc 111943
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 416      gttgggaacccatctccggc 435
                ||||||||||||||||||||
Sbjct: 12516374 gttgggaacccatctccggc 12516393
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>gb|AC005288.1|AC005288 Homo sapiens chromosome 17, clone hCIT.131_K_11, complete sequence
          Length = 137496

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 158    tagcagctacaaaagatctt 177
              ||||||||||||||||||||
Sbjct: 107323 tagcagctacaaaagatctt 107304
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 576     tgttattgccctctgctgttgcat 599
               |||||||||| |||||||||||||
Sbjct: 3675838 tgttattgccatctgctgttgcat 3675815
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>emb|AL713933.6|CNS07YPE Oryza sativa chromosome 12, . BAC OJ1041_D02 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 104421

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 576   tgttattgccctctgctgttgcat 599
             |||||||||| |||||||||||||
Sbjct: 73809 tgttattgccatctgctgttgcat 73832
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>emb|AL731761.3|CNS07YPV Oryza sativa chromosome 12, . BAC OJ1119_B11 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 122128

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 576   tgttattgccctctgctgttgcat 599
             |||||||||| |||||||||||||
Sbjct: 13535 tgttattgccatctgctgttgcat 13558
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>gb|AC148541.3| Saimiri boliviensis boliviensis clone CH254-399L10, complete sequence
          Length = 188060

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 55    atcatctcaaagggaaccta 74
             ||||||||||||||||||||
Sbjct: 98954 atcatctcaaagggaaccta 98935
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>emb|AJ006945.1|HSA569 Human P2Y1 gene
          Length = 16178

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 464   ttggtgaatgagagcactga 483
             ||||||||||||||||||||
Sbjct: 14458 ttggtgaatgagagcactga 14477
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>emb|AL732588.6| Mouse DNA sequence from clone RP24-159M19 on chromosome 2, complete
             sequence
          Length = 91977

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 546   tgagcccctcaaggccctgc 565
             ||||||||||||||||||||
Sbjct: 43047 tgagcccctcaaggccctgc 43028


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,985,622
Number of Sequences: 3902068
Number of extensions: 5985622
Number of successful extensions: 122962
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 122605
Number of HSP's gapped (non-prelim): 344
length of query: 658
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 635
effective length of database: 17,143,297,704
effective search space: 10885994042040
effective search space used: 10885994042040
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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