ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbags8o20 |
|---|---|
| Clone Library Name | barley_pub |
>PMA1_WHEAT (P83970) Plasma membrane ATPase (EC 3.6.3.6) (Proton pump)| Length = 951 Score = 172 bits (437), Expect = 5e-43 Identities = 86/86 (100%), Positives = 86/86 (100%) Frame = -2 Query: 614 YGKGEREAQWATAQRTLHGLQAPEPASHTLFNDKSSYRELSEIAEQAKRRAEIARLRELN 435 YGKGEREAQWATAQRTLHGLQAPEPASHTLFNDKSSYRELSEIAEQAKRRAEIARLRELN Sbjct: 866 YGKGEREAQWATAQRTLHGLQAPEPASHTLFNDKSSYRELSEIAEQAKRRAEIARLRELN 925 Query: 434 TLKGHVESVVKLKGLDIDTINQNYTV 357 TLKGHVESVVKLKGLDIDTINQNYTV Sbjct: 926 TLKGHVESVVKLKGLDIDTINQNYTV 951
>PMA4_NICPL (Q03194) Plasma membrane ATPase 4 (EC 3.6.3.6) (Proton pump 4)| Length = 952 Score = 138 bits (347), Expect = 1e-32 Identities = 71/86 (82%), Positives = 78/86 (90%) Frame = -2 Query: 614 YGKGEREAQWATAQRTLHGLQAPEPASHTLFNDKSSYRELSEIAEQAKRRAEIARLRELN 435 YGK EREAQWA AQRTLHGLQ PE + LFN+K+SYRELSEIAEQAKRRAE+ARLREL+ Sbjct: 869 YGKEEREAQWALAQRTLHGLQPPEATN--LFNEKNSYRELSEIAEQAKRRAEMARLRELH 926 Query: 434 TLKGHVESVVKLKGLDIDTINQNYTV 357 TLKGHVESVVKLKGLDI+TI Q+YTV Sbjct: 927 TLKGHVESVVKLKGLDIETIQQHYTV 952
>PMA5_ARATH (Q9SJB3) ATPase 5, plasma membrane-type (EC 3.6.3.6) (Proton pump 5)| Length = 948 Score = 133 bits (335), Expect = 4e-31 Identities = 67/86 (77%), Positives = 75/86 (87%) Frame = -2 Query: 614 YGKGEREAQWATAQRTLHGLQAPEPASHTLFNDKSSYRELSEIAEQAKRRAEIARLRELN 435 YGK EREAQWA AQRTLHGLQ E + +FN+K+SY ELS+IAEQAKRRAE+ RLRE+N Sbjct: 865 YGKEEREAQWAAAQRTLHGLQPAE--KNNIFNEKNSYSELSQIAEQAKRRAEVVRLREIN 922 Query: 434 TLKGHVESVVKLKGLDIDTINQNYTV 357 TLKGHVESVVKLKGLDIDTI Q+YTV Sbjct: 923 TLKGHVESVVKLKGLDIDTIQQHYTV 948
>PMA6_ARATH (Q9SH76) ATPase 6, plasma membrane-type (EC 3.6.3.6) (Proton pump 6)| Length = 949 Score = 130 bits (327), Expect = 3e-30 Identities = 64/86 (74%), Positives = 76/86 (88%) Frame = -2 Query: 614 YGKGEREAQWATAQRTLHGLQAPEPASHTLFNDKSSYRELSEIAEQAKRRAEIARLRELN 435 YG+GEREAQWA AQRTLHGL+ PE ++F D ++Y ELSEIAEQAK+RAE+ARLRE++ Sbjct: 868 YGRGEREAQWALAQRTLHGLKPPE----SMFEDTATYTELSEIAEQAKKRAEVARLREVH 923 Query: 434 TLKGHVESVVKLKGLDIDTINQNYTV 357 TLKGHVESVVKLKGLDID +NQ+YTV Sbjct: 924 TLKGHVESVVKLKGLDIDNLNQHYTV 949
>PMA9_ARATH (Q42556) ATPase 9, plasma membrane-type (EC 3.6.3.6) (Proton pump 9)| Length = 954 Score = 129 bits (325), Expect = 5e-30 Identities = 65/86 (75%), Positives = 75/86 (87%) Frame = -2 Query: 614 YGKGEREAQWATAQRTLHGLQAPEPASHTLFNDKSSYRELSEIAEQAKRRAEIARLRELN 435 YGKGEREAQWA AQRTLHGLQ + + +FNDKS+YRELSEIA+QAKRRAE+ARLRE + Sbjct: 871 YGKGEREAQWAQAQRTLHGLQPAQTSD--MFNDKSTYRELSEIADQAKRRAEVARLRERH 928 Query: 434 TLKGHVESVVKLKGLDIDTINQNYTV 357 TLKGHVESVVK KGLDI+ I Q+YT+ Sbjct: 929 TLKGHVESVVKQKGLDIEAIQQHYTL 954
>PMA8_ARATH (Q9M2A0) ATPase 8, plasma membrane-type (EC 3.6.3.6) (Proton pump 8)| Length = 948 Score = 128 bits (321), Expect = 2e-29 Identities = 68/86 (79%), Positives = 73/86 (84%) Frame = -2 Query: 614 YGKGEREAQWATAQRTLHGLQAPEPASHTLFNDKSSYRELSEIAEQAKRRAEIARLRELN 435 YGKGEREAQWA AQRTLHGL PE +FND + ELSEIAEQAKRRAE+ARLREL+ Sbjct: 869 YGKGEREAQWALAQRTLHGLPPPE----AMFNDNKN--ELSEIAEQAKRRAEVARLRELH 922 Query: 434 TLKGHVESVVKLKGLDIDTINQNYTV 357 TLKGHVESVVKLKGLDIDTI Q+YTV Sbjct: 923 TLKGHVESVVKLKGLDIDTIQQHYTV 948
>PMA1_ARATH (P20649) ATPase 1, plasma membrane-type (EC 3.6.3.6) (Proton pump 1)| Length = 948 Score = 128 bits (321), Expect = 2e-29 Identities = 67/86 (77%), Positives = 72/86 (83%) Frame = -2 Query: 614 YGKGEREAQWATAQRTLHGLQAPEPASHTLFNDKSSYRELSEIAEQAKRRAEIARLRELN 435 YG GEREAQWA AQRTLHGLQ E + +F +K SYRELSEIAEQAKRRAEIARLREL+ Sbjct: 865 YGIGEREAQWAQAQRTLHGLQPKEDVN--IFPEKGSYRELSEIAEQAKRRAEIARLRELH 922 Query: 434 TLKGHVESVVKLKGLDIDTINQNYTV 357 TLKGHVESV KLKGLDIDT +YTV Sbjct: 923 TLKGHVESVAKLKGLDIDTAGHHYTV 948
>PMA2_ARATH (P19456) ATPase 2, plasma membrane-type (EC 3.6.3.6) (Proton pump 2)| Length = 947 Score = 123 bits (308), Expect = 5e-28 Identities = 67/86 (77%), Positives = 73/86 (84%) Frame = -2 Query: 614 YGKGEREAQWATAQRTLHGLQAPEPASHTLFNDKSSYRELSEIAEQAKRRAEIARLRELN 435 YGK EREAQWA AQRTLHGLQ E + +F +K SYRELSEIAEQAKRRAEIARLREL+ Sbjct: 865 YGKEEREAQWALAQRTLHGLQPKEAVN--IFPEKGSYRELSEIAEQAKRRAEIARLRELH 922 Query: 434 TLKGHVESVVKLKGLDIDTINQNYTV 357 TLKGHVESVVKLKGLDI+T +YTV Sbjct: 923 TLKGHVESVVKLKGLDIET-PSHYTV 947
>PMA3_NICPL (Q08436) Plasma membrane ATPase 3 (EC 3.6.3.6) (Proton pump 3)| Length = 956 Score = 120 bits (301), Expect = 3e-27 Identities = 59/86 (68%), Positives = 74/86 (86%) Frame = -2 Query: 614 YGKGEREAQWATAQRTLHGLQAPEPASHTLFNDKSSYRELSEIAEQAKRRAEIARLRELN 435 +GK +RE QWA AQRTLHGLQ P+P +F++ +++ EL+++AE+AKRRAEIARLREL+ Sbjct: 874 FGKEQRELQWAHAQRTLHGLQVPDPK---IFSETTNFNELNQLAEEAKRRAEIARLRELH 930 Query: 434 TLKGHVESVVKLKGLDIDTINQNYTV 357 TLKGHVESVVKLKGLDI+TI Q YTV Sbjct: 931 TLKGHVESVVKLKGLDIETIQQAYTV 956
>PMA1_LYCES (P22180) Plasma membrane ATPase 1 (EC 3.6.3.6) (Proton pump 1)| Length = 956 Score = 119 bits (299), Expect = 5e-27 Identities = 59/86 (68%), Positives = 74/86 (86%) Frame = -2 Query: 614 YGKGEREAQWATAQRTLHGLQAPEPASHTLFNDKSSYRELSEIAEQAKRRAEIARLRELN 435 +GK RE QWA AQRTLHGLQ P+P +F++ +++ EL+++AE+AKRRAEIARLREL+ Sbjct: 874 FGKELRELQWAHAQRTLHGLQVPDPK---IFSETTNFNELNQLAEEAKRRAEIARLRELH 930 Query: 434 TLKGHVESVVKLKGLDIDTINQNYTV 357 TLKGHVESVVKLKGLDI+TI Q+YTV Sbjct: 931 TLKGHVESVVKLKGLDIETIQQSYTV 956
>PMA1_NICPL (Q08435) Plasma membrane ATPase 1 (EC 3.6.3.6) (Proton pump 1)| Length = 957 Score = 118 bits (295), Expect = 2e-26 Identities = 59/86 (68%), Positives = 73/86 (84%) Frame = -2 Query: 614 YGKGEREAQWATAQRTLHGLQAPEPASHTLFNDKSSYRELSEIAEQAKRRAEIARLRELN 435 +GK +RE QWA AQRTLHGLQ P+ LF++ +++ EL+++AE+AKRRAEIARLREL+ Sbjct: 875 FGKEQRELQWAHAQRTLHGLQVPDTK---LFSEATNFNELNQLAEEAKRRAEIARLRELH 931 Query: 434 TLKGHVESVVKLKGLDIDTINQNYTV 357 TLKGHVESVVKLKGLDI+TI Q YTV Sbjct: 932 TLKGHVESVVKLKGLDIETIQQAYTV 957
>PMA11_ARATH (Q9LV11) ATPase 11, plasma membrane-type (EC 3.6.3.6) (Proton pump| 11) Length = 956 Score = 117 bits (294), Expect = 2e-26 Identities = 59/86 (68%), Positives = 73/86 (84%) Frame = -2 Query: 614 YGKGEREAQWATAQRTLHGLQAPEPASHTLFNDKSSYRELSEIAEQAKRRAEIARLRELN 435 +GK +RE QWA AQRTLHGLQAP+ +F +++ + ELS++AE+AKRRAEIARLREL+ Sbjct: 874 FGKEQRELQWAHAQRTLHGLQAPDAK---MFPERTHFNELSQMAEEAKRRAEIARLRELH 930 Query: 434 TLKGHVESVVKLKGLDIDTINQNYTV 357 TLKGHVESVV+LKGLDI+TI Q YTV Sbjct: 931 TLKGHVESVVRLKGLDIETIQQAYTV 956
>PMA4_ARATH (Q9SU58) ATPase 4, plasma membrane-type (EC 3.6.3.6) (Proton pump 4)| Length = 960 Score = 117 bits (292), Expect = 3e-26 Identities = 59/86 (68%), Positives = 72/86 (83%) Frame = -2 Query: 614 YGKGEREAQWATAQRTLHGLQAPEPASHTLFNDKSSYRELSEIAEQAKRRAEIARLRELN 435 +GK +RE QWA AQRTLHGLQAP+ +F D++ EL+++AE+AKRRAEIARLREL+ Sbjct: 878 FGKEQRELQWAHAQRTLHGLQAPDTK---MFTDRTHVSELNQMAEEAKRRAEIARLRELH 934 Query: 434 TLKGHVESVVKLKGLDIDTINQNYTV 357 TLKGHVESVV+LKGLDI+TI Q YTV Sbjct: 935 TLKGHVESVVRLKGLDIETIQQAYTV 960
>PMA2_LYCES (P23980) Plasma membrane ATPase 2 (EC 3.6.3.6) (Proton pump 2)| (Fragment) Length = 704 Score = 116 bits (290), Expect = 6e-26 Identities = 58/86 (67%), Positives = 73/86 (84%) Frame = -2 Query: 614 YGKGEREAQWATAQRTLHGLQAPEPASHTLFNDKSSYRELSEIAEQAKRRAEIARLRELN 435 +GK +RE QWA AQRTLHGLQ P+ LF++ +++ EL+++AE+AKRRAEIAR REL+ Sbjct: 622 FGKEQRELQWAHAQRTLHGLQVPDIK---LFSEATNFNELNQLAEEAKRRAEIARQRELH 678 Query: 434 TLKGHVESVVKLKGLDIDTINQNYTV 357 TLKGHVESVVKLKGLDI+TI Q+YTV Sbjct: 679 TLKGHVESVVKLKGLDIETIQQSYTV 704
>PMA3_ARATH (P20431) ATPase 3, plasma membrane-type (EC 3.6.3.6) (Proton pump 3)| Length = 948 Score = 113 bits (283), Expect = 4e-25 Identities = 63/86 (73%), Positives = 70/86 (81%) Frame = -2 Query: 614 YGKGEREAQWATAQRTLHGLQAPEPASHTLFNDKSSYRELSEIAEQAKRRAEIARLRELN 435 YG EREAQWA AQRTLHGLQ E A+ + ++ YRELSEIA QAKRRAEIARLREL+ Sbjct: 866 YGIEEREAQWAHAQRTLHGLQNTETAN--VVPERGGYRELSEIANQAKRRAEIARLRELH 923 Query: 434 TLKGHVESVVKLKGLDIDTINQNYTV 357 TLKGHVESVVKLKGLDI+T +YTV Sbjct: 924 TLKGHVESVVKLKGLDIETAG-HYTV 948
>PMA7_ARATH (Q9LY32) ATPase 7, plasma membrane-type (EC 3.6.3.6) (Proton pump 7)| Length = 961 Score = 84.3 bits (207), Expect = 3e-16 Identities = 45/87 (51%), Positives = 61/87 (70%), Gaps = 1/87 (1%) Frame = -2 Query: 614 YGKGEREAQWATAQRTLHGLQAPEPASHTLFNDKSSYRELSEIAEQAKRRAEIARLRELN 435 +G+ ER A WAT +RT HGL+ + + +++S EL+ +AE+AKRRAEIAR+REL Sbjct: 879 FGQEERMAAWATEKRTQHGLETGQKPVY----ERNSATELNNMAEEAKRRAEIARMRELQ 934 Query: 434 TLKGHVESVVKLKGLDIDTIN-QNYTV 357 TLKG VES KLKG D++ N NYT+ Sbjct: 935 TLKGKVESAAKLKGYDLEDPNSNNYTI 961
>PMA10_ARATH (Q43128) ATPase 10, plasma membrane-type (EC 3.6.3.6) (Proton pump| 10) Length = 947 Score = 48.9 bits (115), Expect = 1e-05 Identities = 26/53 (49%), Positives = 36/53 (67%) Frame = -2 Query: 515 KSSYRELSEIAEQAKRRAEIARLRELNTLKGHVESVVKLKGLDIDTINQNYTV 357 + S S IAEQ +RRAEIARL E++++ H+ESV+KLK +D I +TV Sbjct: 895 RGSRSRASWIAEQTRRRAEIARLLEVHSVSRHLESVIKLKQIDQRMIRAAHTV 947
>PMA_AVESA (Q7M290) Plasma membrane ATPase (EC 3.6.3.6) (Proton pump)| (Fragments) Length = 110 Score = 43.9 bits (102), Expect = 4e-04 Identities = 26/38 (68%), Positives = 27/38 (71%) Frame = -2 Query: 584 ATAQRTLHGLQAPEPASHTLFNDKSSYRELSEIAEQAK 471 A A +TLHGLQAPE S L NDK ELSEIAEQAK Sbjct: 77 APALKTLHGLQAPESTSLNLPNDK----ELSEIAEQAK 110
>CING_HUMAN (Q9P2M7) Cingulin| Length = 1197 Score = 43.9 bits (102), Expect = 4e-04 Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 3/81 (3%) Frame = -2 Query: 596 EAQWATAQRTLHGLQAPEPASHTLFNDKSSYRELSEIAEQAKRRAE---IARLRELNTLK 426 E Q Q L +Q PEPA L D REL E + K+R E R REL LK Sbjct: 436 ETQVMELQNKLKHVQGPEPAKEVLLKDLLETRELLEEVLEGKQRVEEQLRLRERELTALK 495 Query: 425 GHVESVVKLKGLDIDTINQNY 363 G ++ V + +++ + Q Y Sbjct: 496 GALKEEVASRDQEVEHVRQQY 516
>CING_MOUSE (P59242) Cingulin| Length = 1191 Score = 34.3 bits (77), Expect = 0.30 Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 3/81 (3%) Frame = -2 Query: 596 EAQWATAQRTLHGLQAPEPASHTLFNDKSSYRELSEIAEQAKRRAE---IARLRELNTLK 426 EAQ Q L Q+P+ +L D REL E + K+R E R REL LK Sbjct: 430 EAQVKELQLKLKHSQSPDSGKESLLKDLLDTRELLEELLEGKQRVEEQLRLRERELTALK 489 Query: 425 GHVESVVKLKGLDIDTINQNY 363 G ++ V +++ + Y Sbjct: 490 GALKEEVASHDQEVEHVRLQY 510
>ASPP2_HUMAN (Q13625) Apoptosis-stimulating of p53 protein 2 (Tumor suppressor| p53-binding protein 2) (p53-binding protein 2) (p53BP2) (53BP2) (Bcl2-binding protein) (Bbp) (NY-REN-51 antigen) Length = 1128 Score = 30.4 bits (67), Expect = 4.3 Identities = 20/72 (27%), Positives = 34/72 (47%) Frame = -2 Query: 584 ATAQRTLHGLQAPEPASHTLFNDKSSYRELSEIAEQAKRRAEIARLRELNTLKGHVESVV 405 AT ++ L L+ + ++ + L EIAE + A+L+++ LKGHVE Sbjct: 150 ATKEQRLKFLKQQDQRQQQQVAEQEKLKRLKEIAENQE-----AKLKKVRALKGHVEQKR 204 Query: 404 KLKGLDIDTINQ 369 G ++ I Q Sbjct: 205 LSNGKLVEEIEQ 216
>SMG_DROME (Q23972) Protein Smaug| Length = 999 Score = 30.0 bits (66), Expect = 5.6 Identities = 12/26 (46%), Positives = 18/26 (69%) Frame = -1 Query: 372 PKLHRVRNLGIGPNNMTSVLERDWNG 295 PK+H V+ G+GPNN ++ + WNG Sbjct: 769 PKMHHVKPAGVGPNN-GNINKPRWNG 793
>GCM2_MOUSE (O09102) Chorion-specific transcription factor GCMb (Glial cells| missing homolog 2) (GCM motif protein 2) (mGCMb) Length = 504 Score = 30.0 bits (66), Expect = 5.6 Identities = 15/61 (24%), Positives = 28/61 (45%) Frame = -2 Query: 566 LHGLQAPEPASHTLFNDKSSYRELSEIAEQAKRRAEIARLRELNTLKGHVESVVKLKGLD 387 +H PE S T + R+++ + KRR+E R ++GH+ S L+ + Sbjct: 156 VHDHPRPESKSETEGRRSALKRQMASFYQPQKRRSEEPEARSTQDIRGHLNSTAALEPTE 215 Query: 386 I 384 + Sbjct: 216 L 216
>RSRC1_MOUSE (Q9DBU6) Arginine/serine-rich coiled coil protein 1| Length = 334 Score = 29.6 bits (65), Expect = 7.3 Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 1/80 (1%) Frame = -2 Query: 611 GKGEREAQWATAQRTLHGLQAPEPASHTLFNDKSSYREL-SEIAEQAKRRAEIARLRELN 435 GK R + + RT P P SH+ +++SS+R S ++ +R+ RE Sbjct: 91 GKPYRVQRSRSKSRTRRSRSRPRPRSHSRSSERSSHRRTRSRSRDRDRRKVRDKEKREKE 150 Query: 434 TLKGHVESVVKLKGLDIDTI 375 KG + V +K D I Sbjct: 151 KDKGKDKEVHSIKRGDSGNI 170
>RNH2_SYNP7 (Q31PW0) Ribonuclease HII (EC 3.1.26.4) (RNase HII)| Length = 215 Score = 29.6 bits (65), Expect = 7.3 Identities = 16/48 (33%), Positives = 22/48 (45%) Frame = -3 Query: 598 GRHSGLPHREHSMAFKHLSRLPTHSSTTRAATVSFLRSLSKPREELRL 455 GRH G +H A L P H + FLRSL +P +++ L Sbjct: 174 GRHKGYGTAQHRQAILQLGPTPLH-------RIRFLRSLRQPSQQIDL 214
>RNH2_SYNP6 (Q5N4B8) Ribonuclease HII (EC 3.1.26.4) (RNase HII)| Length = 215 Score = 29.6 bits (65), Expect = 7.3 Identities = 16/48 (33%), Positives = 22/48 (45%) Frame = -3 Query: 598 GRHSGLPHREHSMAFKHLSRLPTHSSTTRAATVSFLRSLSKPREELRL 455 GRH G +H A L P H + FLRSL +P +++ L Sbjct: 174 GRHKGYGTAQHRQAILQLGPTPLH-------RIRFLRSLRQPSQQIDL 214
>ASPP2_MOUSE (Q8CG79) Apoptosis-stimulating of p53 protein 2 (Tumor suppressor| p53-binding protein 2) (p53BP2) (53BP2) (Fragment) Length = 1088 Score = 29.6 bits (65), Expect = 7.3 Identities = 20/72 (27%), Positives = 34/72 (47%) Frame = -2 Query: 584 ATAQRTLHGLQAPEPASHTLFNDKSSYRELSEIAEQAKRRAEIARLRELNTLKGHVESVV 405 AT ++ L L+ + ++ + L EIAE + A+L+++ LKGHVE Sbjct: 110 ATKEQRLKFLKQQDQRQQQQAAEQEKLKRLREIAESQE-----AKLKKVRALKGHVEQKR 164 Query: 404 KLKGLDIDTINQ 369 G ++ I Q Sbjct: 165 LSNGKLVEEIEQ 176
>TIM_MOUSE (Q9R1X4) Timeless homolog (mTim)| Length = 1197 Score = 29.6 bits (65), Expect = 7.3 Identities = 18/47 (38%), Positives = 21/47 (44%), Gaps = 5/47 (10%) Frame = -1 Query: 414 VRGEAQGP*HRHHQPKLH-----RVRNLGIGPNNMTSVLERDWNGAP 289 V GE QGP H L R R G+GP + E +WN AP Sbjct: 1112 VPGE-QGPSEEHRTEALRALLSARKRKAGLGPTEEEATGEEEWNSAP 1157 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 83,779,523 Number of Sequences: 219361 Number of extensions: 1654752 Number of successful extensions: 4104 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 3989 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4087 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5538924943 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
