ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags8o11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AL445672.15| Human DNA sequence from clone RP11-66D1 on chro... 46 0.13
2gb|AC092154.3| Homo sapiens BAC clone RP11-264K23 from 7, comple... 42 2.1
3gb|AC145372.7| Medicago truncatula clone mth2-5f4, complete sequ... 42 2.1
4gb|AC011339.5| Homo sapiens chromosome 5 clone CTC-260J12, compl... 42 2.1
5gb|CP000040.1| Bacillus cereus E33L plasmid pE33L466, complete s... 42 2.1
6gb|AC116917.2| Homo sapiens chromosome 5 clone RP11-756G12, comp... 42 2.1
7gb|AC131036.4| Mus musculus chromosome 5, clone RP23-358D12, com... 40 8.2
8ref|XM_637237.1| Dictyostelium discoideum putative basic-leucine... 40 8.2
9gb|AY530756.1| Myxococcus xanthus strain DK1622 ORFA, HthA (hthA... 40 8.2
10gb|AC163275.4| Mus musculus chromosome 5, clone RP23-458G12, com... 40 8.2
11emb|AL008868.1|CEC53C7 Caenorhabditis elegans Cosmid C53C7, comp... 40 8.2
12gb|AC006459.3| Homo sapiens BAC clone GS1-281N8 from 7, complete... 40 8.2
13emb|AL591605.7| Human DNA sequence from clone RP11-476G6 on chro... 40 8.2
14gb|AC144523.2| Homo sapiens BAC clone RP11-1302F12 from UL, comp... 40 8.2
15gb|AC092668.2| Homo sapiens BAC clone RP11-553F8 from 4, complet... 40 8.2
16gb|AC068725.5|AC068725 Homo sapiens chromosome 2 clone RP11-737H... 40 8.2
17dbj|AP006724.1| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 8.2
18dbj|AP006627.1| Bacillus clausii KSM-K16 DNA, complete genome 40 8.2

>emb|AL445672.15| Human DNA sequence from clone RP11-66D1 on chromosome 9, complete
             sequence
          Length = 113031

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 319   ttaattttaattttctgaaagaa 341
             |||||||||||||||||||||||
Sbjct: 84891 ttaattttaattttctgaaagaa 84913



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>gb|AC092154.3| Homo sapiens BAC clone RP11-264K23 from 7, complete sequence
          Length = 11278

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 317  gattaattttaattttctgaa 337
            |||||||||||||||||||||
Sbjct: 3600 gattaattttaattttctgaa 3580



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>gb|AC145372.7| Medicago truncatula clone mth2-5f4, complete sequence
          Length = 94647

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 402   caaatatcagaagaaaaacaa 422
             |||||||||||||||||||||
Sbjct: 16335 caaatatcagaagaaaaacaa 16355



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>gb|AC011339.5| Homo sapiens chromosome 5 clone CTC-260J12, complete sequence
          Length = 152560

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 407    atcagaagaaaaacaacaatg 427
              |||||||||||||||||||||
Sbjct: 102225 atcagaagaaaaacaacaatg 102205



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>gb|CP000040.1| Bacillus cereus E33L plasmid pE33L466, complete sequence
          Length = 466370

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 242    ttgggataccacagtcataca 262
              |||||||||||||||||||||
Sbjct: 349173 ttgggataccacagtcataca 349193



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>gb|AC116917.2| Homo sapiens chromosome 5 clone RP11-756G12, complete sequence
          Length = 165764

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 407   atcagaagaaaaacaacaatg 427
             |||||||||||||||||||||
Sbjct: 43883 atcagaagaaaaacaacaatg 43863



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>gb|AC131036.4| Mus musculus chromosome 5, clone RP23-358D12, complete sequence
          Length = 197112

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 273   tggcaaagttagaaatatca 292
             ||||||||||||||||||||
Sbjct: 74229 tggcaaagttagaaatatca 74210



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>ref|XM_637237.1| Dictyostelium discoideum putative basic-leucine zipper transcription
            factor (DDB0220090), partial mRNA
          Length = 2505

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 313  gcaagattaattttaatttt 332
            ||||||||||||||||||||
Sbjct: 2030 gcaagattaattttaatttt 2011



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>gb|AY530756.1| Myxococcus xanthus strain DK1622 ORFA, HthA (hthA), HthB (hthB), and
            ORFB genes, complete cds
          Length = 5924

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 538  atggcgcgctcttgggcatg 557
            ||||||||||||||||||||
Sbjct: 5230 atggcgcgctcttgggcatg 5211



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>gb|AC163275.4| Mus musculus chromosome 5, clone RP23-458G12, complete sequence
          Length = 176643

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 273    tggcaaagttagaaatatca 292
              ||||||||||||||||||||
Sbjct: 119203 tggcaaagttagaaatatca 119184



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>emb|AL008868.1|CEC53C7 Caenorhabditis elegans Cosmid C53C7, complete sequence
          Length = 33630

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 314   caagattaattttaattttctgaaagaa 341
             |||||||  |||||||||||||||||||
Sbjct: 26272 caagattttttttaattttctgaaagaa 26245



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>gb|AC006459.3| Homo sapiens BAC clone GS1-281N8 from 7, complete sequence
          Length = 186981

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 319   ttaattttaattttctgaaa 338
             ||||||||||||||||||||
Sbjct: 80799 ttaattttaattttctgaaa 80780



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>emb|AL591605.7| Human DNA sequence from clone RP11-476G6 on chromosome 6, complete
             sequence
          Length = 137494

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 403   aaatatcagaagaaaaacaa 422
             ||||||||||||||||||||
Sbjct: 72096 aaatatcagaagaaaaacaa 72115



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>gb|AC144523.2| Homo sapiens BAC clone RP11-1302F12 from UL, complete sequence
          Length = 190427

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 209  acattcggaagttgattgag 228
            ||||||||||||||||||||
Sbjct: 4008 acattcggaagttgattgag 4027



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>gb|AC092668.2| Homo sapiens BAC clone RP11-553F8 from 4, complete sequence
          Length = 167570

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 315   aagattaattttaattttctgaaagaac 342
             |||||| ||||| |||||||||||||||
Sbjct: 75482 aagattcattttcattttctgaaagaac 75455



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>gb|AC068725.5|AC068725 Homo sapiens chromosome 2 clone RP11-737H13, complete sequence
          Length = 165560

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 470   aatgtagagatgatgtggta 489
             ||||||||||||||||||||
Sbjct: 92513 aatgtagagatgatgtggta 92532



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>dbj|AP006724.1| Homo sapiens genomic DNA, chromosome 11 clone:RP11-17M1, complete
              sequence
          Length = 171460

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 209    acattcggaagttgattgag 228
              ||||||||||||||||||||
Sbjct: 136761 acattcggaagttgattgag 136780



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>dbj|AP006627.1| Bacillus clausii KSM-K16 DNA, complete genome
          Length = 4303871

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 412     aagaaaaacaacaatggcaa 431
               ||||||||||||||||||||
Sbjct: 2096568 aagaaaaacaacaatggcaa 2096549


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,296,447
Number of Sequences: 3902068
Number of extensions: 5296447
Number of successful extensions: 121643
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 121585
Number of HSP's gapped (non-prelim): 58
length of query: 602
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 579
effective length of database: 17,143,297,704
effective search space: 9925969370616
effective search space used: 9925969370616
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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