ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags8o09 |
|---|---|
| Clone Library Name | barley_pub |
>RL19C_ARATH (P49693) 60S ribosomal protein L19-3| Length = 208 Score = 113 bits (283), Expect = 4e-25 Identities = 57/83 (68%), Positives = 62/83 (74%) Frame = -2 Query: 649 RRLLRKYREAKKIDKHMYHDMYLKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQFXXX 470 RRLL+KYRE KKID+HMYHDMY+KVKGN+FKNKRVLMESIHKSKAEKAREKTLSDQF Sbjct: 103 RRLLKKYRETKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAK 162 Query: 469 XXXXXXXXXXXXXXXXXRLAQGP 401 RLA+GP Sbjct: 163 RAKNKASRERKHARREERLAKGP 185
>RL19A_ARATH (Q9SRX2) 60S ribosomal protein L19-1| Length = 214 Score = 113 bits (283), Expect = 4e-25 Identities = 57/83 (68%), Positives = 62/83 (74%) Frame = -2 Query: 649 RRLLRKYREAKKIDKHMYHDMYLKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQFXXX 470 RRLL+KYRE KKIDKHMYHDMY++VKGN+FKNKRVLMESIHKSKAEKAREKTLSDQF Sbjct: 103 RRLLKKYRETKKIDKHMYHDMYMRVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAK 162 Query: 469 XXXXXXXXXXXXXXXXXRLAQGP 401 RLA+GP Sbjct: 163 RAKNKASRERKHARREERLAKGP 185
>RL19B_ARATH (Q9LUQ6) 60S ribosomal protein L19-2| Length = 209 Score = 109 bits (272), Expect = 8e-24 Identities = 55/83 (66%), Positives = 60/83 (72%) Frame = -2 Query: 649 RRLLRKYREAKKIDKHMYHDMYLKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQFXXX 470 RR L KYRE+KKID+HMYHDMY+KVKGN+FKNKRVLMESIHK KAEKAREKTL+DQF Sbjct: 103 RRFLSKYRESKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKMKAEKAREKTLADQFEAK 162 Query: 469 XXXXXXXXXXXXXXXXXRLAQGP 401 RLAQGP Sbjct: 163 RIKNKASRERKFARREERLAQGP 185
>RL19_RAT (P84100) 60S ribosomal protein L19| Length = 196 Score = 95.9 bits (237), Expect = 9e-20 Identities = 43/56 (76%), Positives = 52/56 (92%) Frame = -2 Query: 649 RRLLRKYREAKKIDKHMYHDMYLKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 482 RRLLR+YRE+KKID+HMYH +YLKVKGN+FKNKR+LME IHK KA+KAR+K L+DQ Sbjct: 103 RRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQ 158
>RL19_PONPY (Q5RB99) 60S ribosomal protein L19| Length = 196 Score = 95.9 bits (237), Expect = 9e-20 Identities = 43/56 (76%), Positives = 52/56 (92%) Frame = -2 Query: 649 RRLLRKYREAKKIDKHMYHDMYLKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 482 RRLLR+YRE+KKID+HMYH +YLKVKGN+FKNKR+LME IHK KA+KAR+K L+DQ Sbjct: 103 RRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQ 158
>RL19_MOUSE (P84099) 60S ribosomal protein L19| Length = 196 Score = 95.9 bits (237), Expect = 9e-20 Identities = 43/56 (76%), Positives = 52/56 (92%) Frame = -2 Query: 649 RRLLRKYREAKKIDKHMYHDMYLKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 482 RRLLR+YRE+KKID+HMYH +YLKVKGN+FKNKR+LME IHK KA+KAR+K L+DQ Sbjct: 103 RRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQ 158
>RL19_MACFA (Q8HXN9) 60S ribosomal protein L19| Length = 196 Score = 95.9 bits (237), Expect = 9e-20 Identities = 43/56 (76%), Positives = 52/56 (92%) Frame = -2 Query: 649 RRLLRKYREAKKIDKHMYHDMYLKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 482 RRLLR+YRE+KKID+HMYH +YLKVKGN+FKNKR+LME IHK KA+KAR+K L+DQ Sbjct: 103 RRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQ 158
>RL19_HUMAN (P84098) 60S ribosomal protein L19| Length = 196 Score = 95.9 bits (237), Expect = 9e-20 Identities = 43/56 (76%), Positives = 52/56 (92%) Frame = -2 Query: 649 RRLLRKYREAKKIDKHMYHDMYLKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 482 RRLLR+YRE+KKID+HMYH +YLKVKGN+FKNKR+LME IHK KA+KAR+K L+DQ Sbjct: 103 RRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQ 158
>RL19_BOVIN (Q3T0W9) 60S ribosomal protein L19| Length = 196 Score = 95.9 bits (237), Expect = 9e-20 Identities = 43/56 (76%), Positives = 52/56 (92%) Frame = -2 Query: 649 RRLLRKYREAKKIDKHMYHDMYLKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 482 RRLLR+YRE+KKID+HMYH +YLKVKGN+FKNKR+LME IHK KA+KAR+K L+DQ Sbjct: 103 RRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQ 158
>RL19_XENLA (Q7ZYS1) 60S ribosomal protein L19| Length = 197 Score = 95.9 bits (237), Expect = 9e-20 Identities = 43/56 (76%), Positives = 52/56 (92%) Frame = -2 Query: 649 RRLLRKYREAKKIDKHMYHDMYLKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 482 RRLLR+YRE+KKID+HMYH +YLKVKGN+FKNKR+LME IHK KA+KAR+K L+DQ Sbjct: 103 RRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQ 158
>RL19_BRARE (Q6P5L3) 60S ribosomal protein L19| Length = 196 Score = 94.4 bits (233), Expect = 3e-19 Identities = 42/56 (75%), Positives = 51/56 (91%) Frame = -2 Query: 649 RRLLRKYREAKKIDKHMYHDMYLKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 482 RRLLR+YREAKKID+HMYH +YL+ KGN+FKNKR+LME IHK KA+KAR+K L+DQ Sbjct: 103 RRLLRRYREAKKIDRHMYHSLYLRAKGNVFKNKRILMEHIHKLKADKARKKLLADQ 158
>RL19_ICTPU (Q90YU8) 60S ribosomal protein L19| Length = 196 Score = 93.2 bits (230), Expect = 6e-19 Identities = 41/56 (73%), Positives = 51/56 (91%) Frame = -2 Query: 649 RRLLRKYREAKKIDKHMYHDMYLKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 482 RRLLR+YRE+KKID+HMYH +YL+ KGN+FKNKR+LME IHK KA++AR+K LSDQ Sbjct: 103 RRLLRRYRESKKIDRHMYHSLYLRAKGNVFKNKRILMEHIHKLKADRARKKLLSDQ 158
>RL19_DROME (P36241) 60S ribosomal protein L19| Length = 203 Score = 92.8 bits (229), Expect = 8e-19 Identities = 41/56 (73%), Positives = 50/56 (89%) Frame = -2 Query: 649 RRLLRKYREAKKIDKHMYHDMYLKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 482 RRLL+KYR++KKID+H+YHD+Y+K KGN+FKNKRVLME IHK KAEK R K L+DQ Sbjct: 103 RRLLKKYRDSKKIDRHLYHDLYMKCKGNVFKNKRVLMEYIHKKKAEKQRSKMLADQ 158
>RL19_DICDI (P14329) 60S ribosomal protein L19 (Vegetative-specific protein| V14) (22 kDa calmodulin-binding protein) Length = 186 Score = 85.1 bits (209), Expect = 2e-16 Identities = 40/56 (71%), Positives = 46/56 (82%) Frame = -2 Query: 649 RRLLRKYREAKKIDKHMYHDMYLKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 482 RRLL+KYREAKKIDKH Y ++YLK KGN+FKNKR L+E I KSK EK REK + DQ Sbjct: 103 RRLLKKYREAKKIDKHSYRELYLKAKGNVFKNKRTLIEYIVKSKTEKLREKLIQDQ 158
>RL19_CAEEL (O02639) 60S ribosomal protein L19| Length = 198 Score = 77.0 bits (188), Expect = 4e-14 Identities = 34/56 (60%), Positives = 44/56 (78%) Frame = -2 Query: 649 RRLLRKYREAKKIDKHMYHDMYLKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 482 R LLR+YR+AKK+DKH+YH++YL+ KGN FKNK+ L+E I K K E R K L+DQ Sbjct: 103 RNLLRRYRDAKKLDKHLYHELYLRAKGNNFKNKKNLIEYIFKKKTENKRAKQLADQ 158
>RL19_SCHPO (P05734) 60S ribosomal protein L19 (YL15)| Length = 192 Score = 75.5 bits (184), Expect = 1e-13 Identities = 34/56 (60%), Positives = 44/56 (78%) Frame = -2 Query: 649 RRLLRKYREAKKIDKHMYHDMYLKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 482 RRLLRKYRE+ KIDKH+YH +YL+ KGN FK+KR L+E I ++KAE R K + +Q Sbjct: 102 RRLLRKYRESGKIDKHLYHTLYLEAKGNTFKHKRALIEHIQRAKAEANRTKLIQEQ 157
>RL19_YEAST (P05735) 60S ribosomal protein L19 (L23) (YL14) (RP33) (RP15L)| Length = 188 Score = 69.7 bits (169), Expect = 7e-12 Identities = 32/56 (57%), Positives = 44/56 (78%) Frame = -2 Query: 649 RRLLRKYREAKKIDKHMYHDMYLKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 482 RRLL KYR+A KIDKH+YH +Y + KGN FK+KR L+E I ++KA+ REK L+++ Sbjct: 102 RRLLAKYRDAGKIDKHLYHVLYKESKGNAFKHKRALVEHIIQAKADAQREKALNEE 157
>RL19_PYRHO (O59437) 50S ribosomal protein L19e| Length = 150 Score = 42.4 bits (98), Expect = 0.001 Identities = 19/36 (52%), Positives = 24/36 (66%) Frame = -2 Query: 649 RRLLRKYREAKKIDKHMYHDMYLKVKGNMFKNKRVL 542 RR LRK +E KKID+ Y +Y++ KG FKNK L Sbjct: 103 RRELRKLKEQKKIDRKTYRMLYIRAKGGQFKNKHQL 138
>RL19_PYRAB (Q9V1V3) 50S ribosomal protein L19e| Length = 151 Score = 40.4 bits (93), Expect = 0.005 Identities = 19/49 (38%), Positives = 28/49 (57%) Frame = -2 Query: 649 RRLLRKYREAKKIDKHMYHDMYLKVKGNMFKNKRVLMESIHKSKAEKAR 503 R+ LRK +E KKID+ Y +Y++ KG FK+K L + + K R Sbjct: 103 RKELRKLKEQKKIDRRTYRMLYIRAKGGQFKSKHQLYMFLEEHNLLKKR 151
>RL19_PYRFU (Q8U016) 50S ribosomal protein L19e (PfeL19)| Length = 150 Score = 38.9 bits (89), Expect = 0.013 Identities = 17/36 (47%), Positives = 23/36 (63%) Frame = -2 Query: 649 RRLLRKYREAKKIDKHMYHDMYLKVKGNMFKNKRVL 542 R+ LRK + KKID+ Y +Y++ KG FKNK L Sbjct: 103 RKELRKLKAQKKIDRKTYRMLYIRAKGGQFKNKHQL 138
>RL19_SULAC (O05639) 50S ribosomal protein L19e| Length = 150 Score = 36.6 bits (83), Expect = 0.066 Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 4/46 (8%) Frame = -2 Query: 649 RRLLRKYREAKKIDKHMYHDMYLKVKGNMFKN----KRVLMESIHK 524 RR +R R+ IDKH Y +Y + KGN FKN K L + HK Sbjct: 104 RRYIRWLRDNNVIDKHTYRLLYKRAKGNYFKNLSDVKSYLRQMGHK 149
>RL19_SULSO (Q9UX89) 50S ribosomal protein L19e| Length = 151 Score = 33.9 bits (76), Expect = 0.43 Identities = 14/31 (45%), Positives = 20/31 (64%) Frame = -2 Query: 649 RRLLRKYREAKKIDKHMYHDMYLKVKGNMFK 557 R L+ R+ K ID+H Y ++YLK KG +K Sbjct: 104 RAYLKWLRDHKVIDRHTYRELYLKTKGGNYK 134
>Z3H7A_HUMAN (Q8IWR0) Zinc finger CCCH-type domain-containing protein 7A| Length = 971 Score = 31.2 bits (69), Expect = 2.8 Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 5/64 (7%) Frame = +1 Query: 214 GITKILKHSIQGIQTE-----QNSSYLKI*IRPN*FHRVNRKLKRQIFTSLTSLVPLQVE 378 G TK L HS++ I+ + Q + + P+ H V +L LTS++PLQVE Sbjct: 192 GATKALNHSVEDIEPDLLTPRQEAVPVVSLPAPSFSHEVGSELASVPVMPLTSILPLQVE 251 Query: 379 QELL 390 + L Sbjct: 252 ESAL 255
>AA2DB_BRARE (Q8JG69) Alpha-2Db adrenergic receptor (Alpha-2Db adrenoceptor)| (Alpha-2Db adrenoreceptor) (Alpha(2Db)AR) Length = 415 Score = 30.8 bits (68), Expect = 3.6 Identities = 21/93 (22%), Positives = 38/93 (40%), Gaps = 10/93 (10%) Frame = -1 Query: 428 EGGEACSGPKGPFSSSCSTCSGTKE---VKEVKI*RLSFLFTR*NQFGLI*IFKYELFCS 258 EG ++C P G S +CS S ++ +++ + + R +F + +F Sbjct: 290 EGAQSCPKPNGRLSWACSRASELEQEPRARQLSLSKSKLAQMREKRFTFVLAVVMGVFVL 349 Query: 257 VWIPWI-------LCLSIFVIPDTLDTMFHATG 180 W P+ +C IPD+L +F G Sbjct: 350 CWFPFFFTYSLHAICRKSCTIPDSLFNLFFWIG 382
>LY75_HUMAN (O60449) Lymphocyte antigen 75 precursor (DEC-205) (gp200-MR6)| (CD205 antigen) Length = 1722 Score = 30.8 bits (68), Expect = 3.6 Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 7/31 (22%) Frame = +1 Query: 388 LNGPLGPEQAS-------PPSWQSFFHGLPC 459 ++GPLGPE+AS P WQSF L C Sbjct: 626 MSGPLGPEEASPKPDDPCPEGWQSFPASLSC 656 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 78,054,200 Number of Sequences: 219361 Number of extensions: 1422731 Number of successful extensions: 4234 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 4017 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4229 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6143359464 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
