>HES5_RAT (Q03062) Transcription factor HES-5 (Hairy and enhancer of split 5)|
          Length = 166

 Score = 32.7 bits (73), Expect = 0.22
 Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -1

Query: 370 ACPWSAHQDYRQERKDCWCLQEAISF-SMIPHSFATITVLVHFQ 242
           A P S HQDY +     WCLQEA+ F ++   S   + +L HFQ
Sbjct: 79  AGPKSLHQDYSEGYS--WCLQEAVQFLTLHAASDTQMKLLYHFQ 120

>HES5_MOUSE (P70120) Transcription factor HES-5 (Hairy and enhancer of split 5)|
          Length = 167

 Score = 32.7 bits (73), Expect = 0.22
 Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -1

Query: 370 ACPWSAHQDYRQERKDCWCLQEAISF-SMIPHSFATITVLVHFQ 242
           A P S HQDY +     WCLQEA+ F ++   S   + +L HFQ
Sbjct: 79  AGPKSLHQDYSEGYS--WCLQEAVQFLTLHAASDTQMKLLYHFQ 120

>ATG21_CANGA (Q6FRU4) Autophagy-related protein 21|
          Length = 453

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 11/96 (11%)
 Frame = +1

Query: 73  SCQTLK*LESPWQTNSLGVQNEEFKIQYIKGSRTEKHYLGQNIIQGNRL--------NRN 228
           SC  L      W++N+ G  N+  K+    G R   + + +N+  GN L        N N
Sbjct: 137 SCMKLMETLDLWESNNEGNLNDHIKV----GERA-SNMINENLKNGNELDRIRSKSNNNN 191

Query: 229 TPSDSGNGPTQ*W*QSYAGSLR---SLSLLGDTNSL 327
             ++S NG ++ +  S  GS +    L+L G+ NS+
Sbjct: 192 DQTNSDNGRSRTY--SINGSHKIKPQLTLSGNDNSI 225

>HOMEZ_RAT (Q8K3E9) Homeobox and leucine zipper protein Homez (Homeodomain|
           leucine zipper-containing factor)
          Length = 513

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 16/55 (29%), Positives = 29/55 (52%)
 Frame = +1

Query: 97  ESPWQTNSLGVQNEEFKIQYIKGSRTEKHYLGQNIIQGNRLNRNTPSDSGNGPTQ 261
           E P+Q + L + +++ K   + GSRT  H   Q+  Q  +++  +   +G GP Q
Sbjct: 160 EEPFQVSQLPLNHQKVKEPLMMGSRTLNH---QSDCQDLQISGLSKEQAGGGPDQ 211

>VE2_HPV34 (P36792) Regulatory protein E2|
          Length = 345

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +3

Query: 243 WKWTNTVMVAKLCGIIEKLIASWRHQQSFLSC 338
           W WTN       CG+I  + +S   Q+ FL C
Sbjct: 300 WHWTNNTN--SKCGVITFMFSSTSQQKQFLQC 329

>RS18_ARATH (P34788) 40S ribosomal protein S18|
          Length = 152

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = -2

Query: 378 WGVRVRGQHXXXXXXXXXXXXVSKKR 301
           WG+RVRGQH            VSKKR
Sbjct: 127 WGLRVRGQHTKTTGRRGKTVGVSKKR 152

>COP1_PEA (P93471) Ubiquitin ligase protein COP1 (EC 6.3.2.-) (Constitutive|
           photomorphogenesis protein 1)
          Length = 672

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -1

Query: 280 HSFATITVLVHFQNLKECSCLDDYL 206
           HSF  + ++ H +N  +C C   YL
Sbjct: 64  HSFCYMCIITHLRNKSDCPCCGHYL 88

>Y112_MYCMS (Q6MUC0) UPF0078 membrane protein MSC_0112|
          Length = 258

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
 Frame = +3

Query: 228 HSFRFW---KWTNTVMVAKLCGIIEKLIASWRHQQS 326
           +SF +W    W + ++   +  +I  LI +WRH Q+
Sbjct: 202 NSFHYWFSNTWASGILEGNIIILIGGLILAWRHSQN 237

>POLG_BSTV1 (Q65730) Genome polyprotein [Contains: P1 proteinase (N-terminal|
            protein); Helper component proteinase (EC 3.4.22.45)
            (HC-pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic
            inclusion protein (EC 3.6.1.-) (CI); 6 kDa protein 2
            (6K2); Viral ge
          Length = 3093

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 17/73 (23%), Positives = 34/73 (46%)
 Frame = -1

Query: 319  WCLQEAISFSMIPHSFATITVLVHFQNLKECSCLDDYLG*CFALDNVFRFWNL*YIVS*I 140
            W L++ + F  I H    +  +V FQ+ +E   +  ++  CF +   F       I S +
Sbjct: 1064 WLLKKLLKF--IRHEKGRLNEVVVFQSKQEELFISKFMAVCFVISTFFSLDMSNAIYSSL 1121

Query: 139  PRFELLKSLFAMG 101
             +F  + S+ ++G
Sbjct: 1122 TKFRAIFSILSVG 1134


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,698,692
Number of Sequences: 219361
Number of extensions: 1045955
Number of successful extensions: 2063
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2030
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2063
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 1396778976
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)